Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G021340 Cucumis sativus L. HOM05D000539 ORTHO05D000592 9.2e-53 209.9 103 100.0
CsaV3_UNG238520 Cucumis sativus L. HOM05D000539 ORTHO05D000592 5.2e-40 167.5 95 82.1
CsaV3_7G012630 Cucumis sativus L. HOM05D000539 ORTHO05D000592 1.5e-39 166.0 91 84.6
CsaV3_4G020790 Cucumis sativus L. HOM05D000539 ORTHO05D000592 1.7e-38 162.5 90 83.3
MELO3C000141.2 Cucumis melo HOM05D000539 ORTHO05D000592 6.4e-38 160.6 93 77.4
MELO3C028198.2 Cucumis melo HOM05D000539 ORTHO05D000592 9.2e-37 156.8 91 75.8
MELO3C035432.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.2e-36 156.4 93 76.3
MELO3C000336.2 Cucumis melo HOM05D000539 ORTHO05D000592 6.0e-36 154.1 89 77.5
CsaV3_3G024980 Cucumis sativus L. HOM05D000539 ORTHO05D000592 2.3e-35 152.1 90 83.3
MELO3C029907.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.9e-35 151.4 91 74.7
MELO3C030218.2 Cucumis melo HOM05D000539 ORTHO05D000592 9.5e-34 146.7 89 75.3
MELO3C028628.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.6e-31 138.7 91 73.6
MELO3C032759.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.2e-29 131.7 90 70.0
MELO3C033862.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.0e-27 125.2 91 67.0
MELO3C035111.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.0e-27 125.2 72 72.2
CsaV3_3G021520 Cucumis sativus L. HOM05D000539 ORTHO05D000592 4.0e-24 114.8 68 82.4
MELO3C027967.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.2e-23 113.2 93 53.8
MELO3C032093.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.8e-22 108.2 90 53.3
MELO3C029479.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.4e-21 105.5 89 52.8
CsaV3_UNG030160 Cucumis sativus L. HOM05D000539 ORTHO05D000592 1.6e-20 102.8 56 83.9
CsaV3_6G018870 Cucumis sativus L. HOM05D000539 ORTHO05D000592 1.0e-19 100.1 53 86.8
MELO3C035043.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.9e-19 98.2 52 82.7
Sed0012130 Sechium edule HOM05D000539 ORTHO05D000592 1.9e-18 95.9 91 48.4
MELO3C029067.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.5e-18 95.5 79 50.6
CsaV3_1G045370 Cucumis sativus L. HOM05D000539 ORTHO05D000592 2.5e-18 95.5 53 84.9
Sed0002111 Sechium edule HOM05D000539 ORTHO05D000592 2.5e-18 95.5 83 51.8
MELO3C030143.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.3e-18 95.1 93 45.2
MELO3C033385.2 Cucumis melo HOM05D000539 ORTHO05D000592 5.6e-18 94.4 88 50.0
Sed0002737 Sechium edule HOM05D000539 ORTHO05D000592 9.6e-18 93.6 80 50.0
MELO3C027923.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.8e-16 89.4 60 68.3
MELO3C028463.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.1e-16 88.6 47 83.0
Sed0020810 Sechium edule HOM05D000539 ORTHO05D000592 3.1e-16 88.6 84 48.8
MELO3C034092.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.0e-16 88.2 66 57.6
MELO3C029948.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.2e-15 86.7 47 83.0
MELO3C034354.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.4e-15 84.7 48 79.2
ClCG01G010170 Citrullus lanatus HOM05D000539 ORTHO05D000592 1.3e-14 83.2 65 61.5
MELO3C029528.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.7e-14 82.8 69 49.3
MELO3C027571.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.2e-13 78.6 63 54.0
MELO3C028519.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.2e-13 78.2 113 36.3
MELO3C029690.2 Cucumis melo HOM05D000539 ORTHO05D000592 5.4e-13 77.8 62 50.0
MELO3C031428.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.0e-11 72.0 41 75.6
MELO3C033953.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.1e-10 70.1 49 63.3
MELO3C031383.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.3e-10 68.6 44 70.5
MELO3C032706.2 Cucumis melo HOM05D000539 ORTHO05D000592 5.6e-10 67.8 55 61.8
MELO3C034371.2 Cucumis melo HOM05D000539 ORTHO05D000233 5.6e-10 67.8 57 56.1
MELO3C031217.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.6e-09 65.1 57 59.6
MELO3C029090.2 Cucumis melo HOM05D008781 ORTHO05D000592 4.8e-09 64.7 43 67.4
CsaV3_5G020430 Cucumis sativus L. HOM05D000539 ORTHO05D000592 6.2e-09 64.3 55 60.0
MELO3C030038.2 Cucumis melo HOM05D000539 ORTHO05D000592 8.1e-09 63.9 89 42.7
Sed0019036 Sechium edule HOM05D000539 ORTHO05D000592 4.0e-08 61.6 59 50.8
MELO3C031391.2 Cucumis melo HOM05D000539 ORTHO05D000592 6.9e-08 60.8 47 48.9
MELO3C032570.2 Cucumis melo HOM05D000539 ORTHO05D000592 6.9e-08 60.8 34 79.4
Sed0019768 Sechium edule HOM05D000539 ORTHO05D000592 6.9e-08 60.8 59 49.2
Rhsim08G0058700 Rhododendron simsii HOM05D000539 ORTHO05D000592 1.5e-07 59.7 95 33.7
MELO3C034178.2 Cucumis melo HOM05D000539 ORTHO05D000233 2.6e-07 58.9 31 83.9
RcHm_v2.0_Chr2g0108851 Rosa chinensis HOM05D000539 ORTHO05D000592 2.6e-07 58.9 82 35.4
RcHm_v2.0_Chr7g0235651 Rosa chinensis HOM05D000539 ORTHO05D000233 2.6e-07 58.9 82 35.4
MELO3C033118.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.4e-07 58.5 107 30.8
ClCG01G012290 Citrullus lanatus HOM05D000539 ORTHO05D000233 4.5e-07 58.2 73 41.1
FAN10G2166 Fragaria x ananassa HOM05D000539 ORTHO05D000592 5.8e-07 57.8 79 30.4
RcHm_v2.0_Chr4g0417951 Rosa chinensis HOM05D000539 ORTHO05D000592 7.6e-07 57.4 84 34.5
MELO3C030857.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.3e-06 56.6 43 58.1
Sed0007296 Sechium edule HOM05D000539 ORTHO05D000592 1.3e-06 56.6 59 47.5
RcHm_v2.0_Chr1g0318241 Rosa chinensis HOM05D000539 ORTHO05D000592 1.7e-06 56.2 78 35.9
RcHm_v2.0_Chr1g0364031 Rosa chinensis HOM05D000539 ORTHO05D000233 1.7e-06 56.2 83 34.9
MELO3C028785.2 Cucumis melo HOM05D000539 ORTHO05D000233 2.2e-06 55.8 78 34.6
FAN10G4183 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.2e-06 55.8 91 28.6
RcHm_v2.0_Chr3g0482291 Rosa chinensis HOM05D000539 ORTHO05D000592 2.2e-06 55.8 84 33.3
RcHm_v2.0_Chr7g0240601 Rosa chinensis HOM05D000539 ORTHO05D000592 2.2e-06 55.8 84 33.3
FAN02G3402 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.9e-06 55.5 79 30.4
MELO3C030849.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.8e-06 55.1 70 45.7
MELO3C033325.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.8e-06 55.1 78 34.6
MELO3C033645.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.8e-06 55.1 78 34.6
MELO3C034786.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.9e-06 54.7 78 33.3
FvH4_3g21081 Fragaria vesca HOM05D000539 ORTHO05D000592 4.9e-06 54.7 79 29.1
FAN11G2856 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.9e-06 54.7 79 29.1
SGA_v2.0_scaffold191G40501 Striga asiatica HOM05D002644 ORTHO05D003267 4.9e-06 54.7 92 32.6
MELO3C030592.2 Cucumis melo HOM05D000539 ORTHO05D000233 6.4e-06 54.3 78 33.3
MELO3C032017.2 Cucumis melo HOM05D000539 ORTHO05D000592 6.4e-06 54.3 78 33.3
HanXRQChr02g0058961 Helianthus annuus HOM05D000539 ORTHO05D000592 6.4e-06 54.3 89 36.0
RcHm_v2.0_Chr5g0079561 Rosa chinensis HOM05D000539 ORTHO05D000592 6.4e-06 54.3 83 33.7
RcHm_v2.0_Chr7g0209041 Rosa chinensis HOM05D000539 ORTHO05D000592 6.4e-06 54.3 83 33.7
FAN28G2905 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.4e-06 53.9 100 28.0
RcHm_v2.0_Chr2g0095661 Rosa chinensis HOM05D000539 ORTHO05D000592 8.4e-06 53.9 81 33.3
RcHm_v2.0_Chr5g0023941 Rosa chinensis HOM05D000539 ORTHO05D000592 8.4e-06 53.9 83 33.7


User provided reference genes

Program Settings