Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G017350 Cucumis sativus L. HOM05D005803 ORTHO05D008090 0.0e+00 1084.3 561 100.0
ClCG06G005310 Citrullus lanatus HOM05D005803 ORTHO05D008090 7.9e-300 1033.1 626 87.7
Sed0014775 Sechium edule HOM05D005803 ORTHO05D008090 1.3e-289 999.2 561 92.0
MELO3C021349.2 Cucumis melo HOM05D005803 ORTHO05D008090 7.7e-279 963.4 646 81.6
Cfa015360 Carpinus fangiana HOM05D005803 ORTHO05D008090 1.2e-274 949.5 561 86.6
GSVIVG01017783001 Vitis vinifera HOM05D005803 ORTHO05D008090 1.6e-271 939.1 561 85.0
Haze_01246 Corylus avellana HOM05D005803 ORTHO05D008090 3.2e-269 931.4 600 80.7
Hma1.2p1_0698F.1_g205430 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 2.1e-268 928.7 561 84.5
Ciclev10004654m.g Citrus clementina HOM05D005803 ORTHO05D008090 4.7e-268 927.5 562 83.6
RcHm_v2.0_Chr4g0421441 Rosa chinensis HOM05D005803 ORTHO05D008090 1.0e-267 926.4 561 84.8
QL06p007721 Quercus lobata HOM05D005803 ORTHO05D008090 1.4e-267 926.0 560 84.1
Prupe.1G140200 Prunus persica HOM05D005803 ORTHO05D008090 6.8e-267 923.7 561 84.7
Psat1g187960 Pisum sativum HOM05D005803 ORTHO05D008090 8.8e-267 923.3 561 83.4
Lj6g0003207 Lotus japonicus HOM05D005803 ORTHO05D008090 1.2e-266 922.9 561 84.0
Lalb_Chr18g0055621 Lupinus albus HOM05D005803 ORTHO05D008090 1.3e-265 919.5 561 83.6
Manes.15G015300 Manihot esculenta HOM05D005803 ORTHO05D008090 8.3e-265 916.8 561 83.8
CSS0017376 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 1.1e-264 916.4 561 83.4
CSS0035312 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 1.1e-264 916.4 561 83.4
Thecc.04G279700 Theobroma cacao HOM05D005803 ORTHO05D008090 4.1e-264 914.4 562 82.7
VMungo0540G0998 Vigna mungo HOM05D005803 ORTHO05D008090 7.0e-264 913.7 561 84.3
TWI09G0274 Tripterygium wilfordii HOM05D005803 ORTHO05D008090 2.0e-263 912.1 563 83.7
Gohir.A10G161600 Gossypium hirsutum HOM05D005803 ORTHO05D008090 5.9e-263 910.6 562 83.1
Glyma.13G216500 Glycine max HOM05D005803 ORTHO05D008090 1.3e-262 909.4 561 83.6
MD16G1173300 Malus domestica HOM05D005803 ORTHO05D008090 2.3e-262 908.7 562 83.3
Glyma.15G096000 Glycine max HOM05D005803 ORTHO05D008090 6.6e-262 907.1 561 83.6
Potri.008G215100 Populus trichocarpa HOM05D005803 ORTHO05D008090 1.1e-261 906.4 561 82.7
Phvul.006G162900 Phaseolus vulgaris HOM05D005803 ORTHO05D008090 5.6e-261 904.0 561 82.2
Sabra08G0155700 Salix brachista HOM05D005803 ORTHO05D008090 7.2e-261 903.7 561 82.2
Potri.010G022100 Populus trichocarpa HOM05D005803 ORTHO05D008090 1.6e-260 902.5 561 82.2
Gorai.011G187600 Gossypium raimondii HOM05D005803 ORTHO05D008090 6.8e-259 897.1 562 82.0
Ca_00559_v3 Cicer arietinum L. HOM05D005803 ORTHO05D008090 8.9e-259 896.7 561 82.2
PGR031G1735 Punica granatum HOM05D005803 ORTHO05D008090 8.9e-259 896.7 562 81.0
arahy.Tifrunner.gnm1.ann1.7QB25Q Arachis hypogaea HOM05D005803 ORTHO05D008090 5.7e-258 894.0 561 81.8
arahy.Tifrunner.gnm1.ann1.FSUI8I Arachis hypogaea HOM05D005803 ORTHO05D008090 5.7e-258 894.0 561 81.8
MD13G1171800 Malus domestica HOM05D005803 ORTHO05D008090 7.5e-258 893.6 562 82.2
CiPaw.01G151500 Carya illinoinensis HOM05D005803 ORTHO05D008090 1.1e-256 889.8 561 82.2
Dinv44408 Davidia involucrata HOM05D005803 ORTHO05D008090 1.5e-253 879.4 561 80.4
Sopen01g029400 Solanum pennellii HOM05D005803 ORTHO05D008090 1.5e-253 879.4 562 78.8
CANSAT78G2259 Cannabis sativa HOM05D005803 ORTHO05D008090 6.2e-252 874.0 561 81.1
Nn3g21354 Nelumbo nucifera HOM05D005803 ORTHO05D008090 1.0e-251 873.2 562 79.7
Actinidia40241 Actinidia chinensis HOM05D005803 ORTHO05D008090 5.2e-251 870.9 557 81.1
Peaxi162Scf00386g00615 Petunia axillaris HOM05D005803 ORTHO05D008090 1.5e-250 869.4 562 78.8
Sc19g0005000 Simmondsia chinensis HOM05D005803 ORTHO05D008090 1.3e-249 866.3 562 78.5
CAN.G223.20 Capsicum annuum HOM05D005803 ORTHO05D008090 8.3e-249 863.6 562 78.5
Gohir.D10G168100 Gossypium hirsutum HOM05D005803 ORTHO05D008090 1.1e-248 863.2 562 80.1
Duzib151G0664 Durio zibethinus HOM05D005803 ORTHO05D008090 1.4e-248 862.8 562 80.4
FAN07G1352 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.6e-247 859.4 565 79.8
FAN12G0977 Fragaria x ananassa HOM05D005803 ORTHO05D008090 7.8e-247 857.1 557 80.3
Cpa.g.sc1214.2 Carica papaya HOM05D005803 ORTHO05D008090 1.7e-246 855.9 562 79.7
FAN12G3070 Fragaria x ananassa HOM05D005803 ORTHO05D008090 5.6e-245 850.9 560 79.8
Atru.chr4.2785 Acer truncatum HOM05D005803 ORTHO05D008090 1.6e-244 849.4 515 84.1
TAR365G0996 Trochodendron aralioides HOM05D005803 ORTHO05D008090 1.6e-244 849.4 562 79.2
DCAR_027096 Daucus carota HOM05D005803 ORTHO05D008090 2.1e-244 849.0 576 77.4
Lsat_1_v5_gn_5_69681 Lactuca sativa HOM05D005803 ORTHO05D008090 2.1e-244 849.0 561 78.1
Eucgr.B01277 Eucalyptus grandis HOM05D005803 ORTHO05D008090 4.7e-244 847.8 562 77.8
Rhsim04G0218200 Rhododendron simsii HOM05D005803 ORTHO05D008090 8.3e-241 837.0 613 74.1
THA.LOC104820247 Tarenaya hassleriana HOM05D005803 ORTHO05D008090 2.7e-239 832.0 561 75.6
FAN22G2255 Fragaria x ananassa HOM05D005803 ORTHO05D008090 3.5e-239 831.6 546 80.4
Aqoxy5G00678 Aquilegia oxysepala HOM05D005803 ORTHO05D008090 6.0e-239 830.9 539 78.5
Cc03_g02160 Coffea canephora HOM05D005803 ORTHO05D008090 3.0e-238 828.6 560 76.6
Medtr2g019850 Medicago truncatula HOM05D005803 ORTHO05D008090 5.6e-237 824.3 561 76.6
MSTRG.3937 Avicennia marina HOM05D005803 ORTHO05D008090 3.6e-236 821.6 565 75.6
EL10Ac3g06553 Beta vulgaris HOM05D005803 ORTHO05D008090 3.6e-236 821.6 562 74.6
HanXRQChr13g0410111 Helianthus annuus HOM05D005803 ORTHO05D008090 3.6e-236 821.6 561 75.6
FvH4_4g17530 Fragaria vesca HOM05D005803 ORTHO05D008090 4.7e-236 821.2 513 81.9
Migut.G00189 Erythranthe guttata HOM05D005803 ORTHO05D008090 7.1e-232 807.4 566 73.7
Nitab4.5_0000644g0090 Nicotiana tabacum HOM05D005803 ORTHO05D008090 1.5e-229 799.7 576 74.0
Lj6C671G13 Lonicera japonica HOM05D005803 ORTHO05D008090 7.3e-229 797.3 514 79.2
ATR0706G085 Amborella trichopoda HOM05D005803 ORTHO05D008090 2.8e-228 795.4 562 71.2
HPP92_015179 Vanilla planifolia HOM05D005803 ORTHO05D008090 4.7e-228 794.7 561 73.3
PSO832G0201 Papaver somniferum HOM05D005803 ORTHO05D008090 4.4e-226 788.1 562 72.6
BcaB02g09144 Brassica carinata HOM05D005803 ORTHO05D008090 5.8e-226 787.7 561 72.5
AT2G39090 Arabidopsis thaliana HOM05D005803 ORTHO05D008090 2.4e-224 782.3 561 72.2
A05p07190 Brassica napus HOM05D005803 ORTHO05D008090 4.2e-224 781.6 562 72.4
BraA05t19684Z Brassica rapa HOM05D005803 ORTHO05D008090 4.2e-224 781.6 562 72.4
PSO210G1989 Papaver somniferum HOM05D005803 ORTHO05D008090 5.4e-224 781.2 562 72.1
Carub.0004s2114 Capsella rubella HOM05D005803 ORTHO05D008090 7.1e-224 780.8 561 72.4
Sp4g21440 Schrenkiella parvula HOM05D005803 ORTHO05D008090 9.3e-224 780.4 561 72.0
Ah.13g074480 Amaranthus hybridus HOM05D005803 ORTHO05D008090 4.6e-223 778.1 544 74.1
Aa31LG5G20510 Aethionema arabicum HOM05D005803 ORTHO05D008090 4.3e-221 771.5 576 70.7
BcaC02g12039 Brassica carinata HOM05D005803 ORTHO05D008090 3.6e-220 768.5 561 71.1
C04p08600 Brassica napus HOM05D005803 ORTHO05D008090 9.0e-219 763.8 562 71.0
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 9.0e-219 763.8 561 70.9
Thhalv10017916m.g Eutrema salsugineum HOM05D005803 ORTHO05D008090 2.9e-217 758.8 532 73.5
MBI19_g01944_MAGBIO Magnolia biondii HOM05D005803 ORTHO05D008090 4.9e-217 758.1 533 74.1
CARHR133850 Cardamine hirsuta HOM05D005803 ORTHO05D008090 6.4e-217 757.7 562 70.1
AL4G36390 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 9.3e-216 753.8 561 70.9
COL.COLO4_13910 Corchorus olitorius HOM05D005803 ORTHO05D008090 4.6e-215 751.5 512 75.2
vmacro22476 Vaccinium macrocarpon HOM05D005803 ORTHO05D008090 3.2e-208 728.8 595 68.1
SGA_v2.0_scaffold57G20231 Striga asiatica HOM05D005803 ORTHO05D008090 1.0e-201 707.2 476 77.1
Hma1.2p1_0698F.1_g205440 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 7.2e-192 674.5 393 86.8
Os05g0149900 Oryza sativa ssp. japonica HOM05D005803 ORTHO05D008090 6.9e-179 631.3 434 73.0
unitig_26.g9058 Utricularia gibba HOM05D005803 ORTHO05D008090 7.7e-178 627.9 455 68.8
Mapoly0073s0077 Marchantia polymorpha HOM05D005803 ORTHO05D008090 8.5e-177 624.4 563 59.0
Pp3c23_6980 Physcomitrium patens HOM05D005803 ORTHO05D008090 3.2e-176 622.5 562 58.0
SMO119G0467 Selaginella moellendorffii HOM05D005803 ORTHO05D008090 3.5e-170 602.4 569 56.6
AUR62042651 Chenopodium quinoa HOM05D005803 ORTHO05D008090 1.8e-166 590.1 554 59.0
AagrBONN_evm.TU.Sc2ySwM_228.1968 Anthoceros agrestis HOM05D005803 ORTHO05D008090 1.7e-164 583.6 563 56.0
CBR_g37168 Chara braunii HOM05D005803 ORTHO05D000048 5.9e-154 548.5 568 50.7
AUR62043505 Chenopodium quinoa HOM05D005803 ORTHO05D008090 1.9e-152 543.5 382 73.6
Nitab4.5_0000829g0230 Nicotiana tabacum HOM05D005803 ORTHO05D008090 3.4e-149 532.7 339 81.4
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 9.5e-144 514.6 523 58.1
TPR.G1478 Trifolium pratense HOM05D005803 ORTHO05D008090 1.1e-139 501.1 306 85.9
CDE06G0920 Ceratophyllum demersum HOM05D005803 ORTHO05D008090 7.8e-130 468.4 349 70.5
ECA240G2219 Erigeron canadensis HOM05D005803 ORTHO05D008090 3.3e-128 463.0 340 68.5
Zm00001eb418180 Zea mays HOM05D005803 ORTHO05D008090 2.0e-125 453.8 356 63.2
TPR.G35525 Trifolium pratense HOM05D005803 ORTHO05D008090 1.4e-118 431.0 260 80.8
MCO16G459 Micromonas commoda HOM05D005803 ORTHO05D008090 2.2e-84 317.4 548 37.8
Oeu029260.1 Olea europaea HOM05D005803 ORTHO05D008090 2.6e-77 293.9 208 76.4
Solyc01g067490.4 Solanum lycopersicum HOM05D005803 ORTHO05D008090 2.7e-74 283.9 198 72.7
ECA240G4135 Erigeron canadensis HOM05D005803 ORTHO05D008090 2.3e-65 254.2 200 69.5
Oeu032270.1 Olea europaea HOM05D005803 ORTHO05D008090 2.2e-63 247.7 144 80.6
TPR.G29244 Trifolium pratense HOM05D005803 ORTHO05D008090 1.1e-56 225.3 161 73.9
SEGI_31260 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 6.3e-55 219.5 180 57.2
Hma1.2p1_2251F.1_g318140 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 3.5e-53 213.8 130 80.8
TPR.G29241 Trifolium pratense HOM05D005803 ORTHO05D008090 3.8e-36 157.1 90 77.8
BcaC07g41552 Brassica carinata HOM05D000238 ORTHO05D020090 1.2e-32 145.6 180 48.3
C06p17250 Brassica napus HOM05D005803 ORTHO05D020090 2.8e-31 141.0 158 51.9
BolC6t36924H Brassica oleracea HOM05D005803 ORTHO05D020090 2.8e-31 141.0 158 51.9
BcaC09g48072 Brassica carinata HOM05D005803 ORTHO05D020090 3.7e-31 140.6 178 47.2
Hma1.2p1_0055F.1_g031500 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 2.4e-30 137.9 90 75.6
C04p44010 Brassica napus HOM05D005803 ORTHO05D020090 2.5e-27 127.9 167 47.9
AL92U10050 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 1.6e-26 125.2 130 53.8
Hma1.2p1_2251F.1_g318130 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.2e-24 119.0 129 52.7
SEGI_25333 Sequoiadendron giganteum HOM05D005803 ORTHO05D020090 3.4e-24 117.5 77 72.7
BcaC08g44302 Brassica carinata HOM05D005803 ORTHO05D020090 1.6e-21 108.6 58 89.7
Atru.chr4.2782 Acer truncatum HOM05D005803 ORTHO05D008090 3.6e-18 97.4 87 63.2
Hma1.2p1_1012F.1_g247600 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.2e-16 92.4 90 58.9
SEGI_29512 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 4.4e-16 90.5 85 58.8
MCO11G723 Micromonas commoda HOM05D004454 ORTHO05D005462 2.6e-08 64.7 163 23.3
SEGI_04834 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 9.2e-06 56.2 47 48.9


User provided reference genes

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