Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G017270 Cucumis sativus L. HOM05D006081 ORTHO05D007628 7.5e-101 370.5 190 100.0
MELO3C021343.2 Cucumis melo HOM05D006081 ORTHO05D007628 1.1e-96 356.7 189 96.3
ClCG06G005230 Citrullus lanatus HOM05D006081 ORTHO05D007628 7.3e-88 327.4 188 89.4
Sed0014998 Sechium edule HOM05D006081 ORTHO05D007628 4.4e-77 291.6 188 80.9
Cfa015373 Carpinus fangiana HOM05D006081 ORTHO05D007628 4.0e-62 241.9 185 64.3
Phvul.009G246800 Phaseolus vulgaris HOM05D006081 ORTHO05D007628 8.7e-57 224.2 192 62.5
Medtr2g436940 Medicago truncatula HOM05D006081 ORTHO05D007628 1.1e-56 223.8 196 60.7
Glyma.15G153100 Glycine max HOM05D006081 ORTHO05D007628 1.5e-56 223.4 194 61.9
Prupe.1G138200 Prunus persica HOM05D006081 ORTHO05D007628 9.6e-56 220.7 198 58.6
CSS0030149 Camellia sinensis var. sinensis HOM05D006081 ORTHO05D007628 2.8e-55 219.2 185 62.2
Lj6g0000146 Lotus japonicus HOM05D006081 ORTHO05D007628 2.8e-55 219.2 194 60.3
Actinidia40266 Actinidia chinensis HOM05D006081 ORTHO05D007628 3.6e-55 218.8 182 63.2
TWI53G0242 Tripterygium wilfordii HOM05D006081 ORTHO05D007628 3.6e-55 218.8 192 58.3
Rhsim04G0220300 Rhododendron simsii HOM05D006081 ORTHO05D007628 6.2e-55 218.0 188 60.6
CiPaw.02G083900 Carya illinoinensis HOM05D006081 ORTHO05D007628 1.1e-54 217.2 192 57.8
Psat1g153280 Pisum sativum HOM05D006081 ORTHO05D007628 1.1e-54 217.2 194 60.3
VMungo1309G0529 Vigna mungo HOM05D006081 ORTHO05D007628 1.1e-54 217.2 192 60.9
Ca_01966_v3 Cicer arietinum L. HOM05D006081 ORTHO05D007628 2.4e-54 216.1 194 60.8
Manes.15G013500 Manihot esculenta HOM05D006081 ORTHO05D007628 3.1e-54 215.7 194 59.3
vmacro08134 Vaccinium macrocarpon HOM05D006081 ORTHO05D007628 4.0e-54 215.3 186 59.1
Atru.chr4.2827 Acer truncatum HOM05D006081 ORTHO05D007628 5.3e-54 214.9 194 59.3
MD16G1171400 Malus domestica HOM05D006081 ORTHO05D007628 1.2e-53 213.8 189 59.8
Dinv29771 Davidia involucrata HOM05D006081 ORTHO05D007628 2.0e-53 213.0 187 58.8
CiPaw.01G149700 Carya illinoinensis HOM05D006081 ORTHO05D007628 3.4e-53 212.2 192 57.8
Manes.03G194000 Manihot esculenta HOM05D006081 ORTHO05D007628 4.4e-53 211.8 188 59.6
QL06p008580 Quercus lobata HOM05D006081 ORTHO05D007628 4.4e-53 211.8 188 60.1
Glyma.09G045900 Glycine max HOM05D006081 ORTHO05D007628 5.8e-53 211.5 194 58.8
Cc00_g10580 Coffea canephora HOM05D006081 ORTHO05D007628 7.6e-53 211.1 185 59.5
FvH4_4g17860 Fragaria vesca HOM05D006081 ORTHO05D007628 1.3e-52 210.3 185 56.8
FAN07G2255 Fragaria x ananassa HOM05D006081 ORTHO05D007628 1.3e-52 210.3 185 56.8
Nitab4.5_0003972g0010 Nicotiana tabacum HOM05D006081 ORTHO05D007628 1.7e-52 209.9 187 58.8
Oeu027733.1 Olea europaea HOM05D006081 ORTHO05D007628 2.2e-52 209.5 185 58.9
RcHm_v2.0_Chr4g0421971 Rosa chinensis HOM05D006081 ORTHO05D007628 2.2e-52 209.5 193 56.0
Peaxi162Scf00534g00212 Petunia axillaris HOM05D006081 ORTHO05D007628 2.9e-52 209.1 185 60.0
FAN12G2613 Fragaria x ananassa HOM05D006081 ORTHO05D007628 6.4e-52 208.0 185 56.2
FAN17G1774 Fragaria x ananassa HOM05D006081 ORTHO05D007628 1.1e-51 207.2 185 55.7
Nitab4.5_0003749g0060 Nicotiana tabacum HOM05D006081 ORTHO05D007628 1.4e-51 206.8 187 58.3
GSVIVG01017744001 Vitis vinifera HOM05D006081 ORTHO05D007628 2.4e-51 206.1 191 56.0
PGR031G1107 Punica granatum HOM05D006081 ORTHO05D007628 4.2e-51 205.3 186 57.0
Cpa.g.sc16.161 Carica papaya HOM05D006081 ORTHO05D007628 7.1e-51 204.5 194 55.2
Ciclev10005978m.g Citrus clementina HOM05D006081 ORTHO05D007628 9.3e-51 204.1 192 56.8
Eucgr.H03897 Eucalyptus grandis HOM05D006081 ORTHO05D007628 2.7e-50 202.6 191 57.6
Potri.008G210100 Populus trichocarpa HOM05D006081 ORTHO05D007628 2.7e-50 202.6 192 56.8
PGSC0003DMG400022662 Solanum tuberosum HOM05D006081 ORTHO05D007628 3.5e-50 202.2 185 57.3
Gohir.A02G048800 Gossypium hirsutum HOM05D006081 ORTHO05D007628 6.0e-50 201.4 184 56.5
Gohir.D02G054100 Gossypium hirsutum HOM05D006081 ORTHO05D007628 7.9e-50 201.1 183 56.3
Gorai.005G059600 Gossypium raimondii HOM05D006081 ORTHO05D007628 7.9e-50 201.1 183 56.3
SalBow5G1281 Salvia bowleyana HOM05D006081 ORTHO05D007628 1.0e-49 200.7 195 55.9
MSTRG.21799 Avicennia marina HOM05D006081 ORTHO05D007628 2.3e-49 199.5 187 55.6
Lalb_Chr18g0051761 Lupinus albus HOM05D006081 ORTHO05D007628 2.3e-49 199.5 197 54.8
SGA_v2.0_scaffold55G19699 Striga asiatica HOM05D006081 ORTHO05D007628 5.1e-49 198.4 196 55.6
Thecc.04G283000 Theobroma cacao HOM05D006081 ORTHO05D007628 5.1e-49 198.4 189 56.6
TAR636G3617 Trochodendron aralioides HOM05D006081 ORTHO05D007628 6.6e-49 198.0 188 56.9
Solyc01g067080.3 Solanum lycopersicum HOM05D006081 ORTHO05D007628 8.7e-49 197.6 185 55.1
Sopen01g028790 Solanum pennellii HOM05D006081 ORTHO05D007628 1.1e-48 197.2 185 55.1
Duzib151G0152 Durio zibethinus HOM05D006081 ORTHO05D007628 1.9e-48 196.4 185 55.7
CANSAT78G1428 Cannabis sativa HOM05D006081 ORTHO05D007628 2.5e-48 196.1 196 55.6
TAR365G0221 Trochodendron aralioides HOM05D006081 ORTHO05D007628 4.3e-48 195.3 161 62.1
MBI19_g30830_MAGBIO Magnolia biondii HOM05D006081 ORTHO05D007628 9.6e-48 194.1 190 51.6
Oeu023291.2 Olea europaea HOM05D006081 ORTHO05D007628 9.6e-48 194.1 225 48.9
Sabra08G0154300 Salix brachista HOM05D006081 ORTHO05D007628 9.6e-48 194.1 192 54.2
arahy.Tifrunner.gnm1.ann1.EZB5Q6 Arachis hypogaea HOM05D006081 ORTHO05D007628 1.6e-47 193.4 192 53.6
THA.LOC104820251 Tarenaya hassleriana HOM05D006081 ORTHO05D007628 2.8e-47 192.6 190 54.7
arahy.Tifrunner.gnm1.ann1.TA2ZSY Arachis hypogaea HOM05D006081 ORTHO05D007628 4.8e-47 191.8 192 53.6
HanXRQChr03g0079991 Helianthus annuus HOM05D006081 ORTHO05D007628 1.4e-46 190.3 182 55.5
Migut.N00097 Erythranthe guttata HOM05D006081 ORTHO05D007628 1.2e-45 187.2 188 54.3
ECA240G0281 Erigeron canadensis HOM05D006081 ORTHO05D007628 2.0e-45 186.4 185 55.7
Lalb_Chr20g0114491 Lupinus albus HOM05D006081 ORTHO05D007628 2.6e-45 186.0 191 55.5
PSO210G2816 Papaver somniferum HOM05D006081 ORTHO05D007628 3.4e-45 185.7 194 50.5
Lj6A673G88 Lonicera japonica HOM05D006081 ORTHO05D007628 5.8e-45 184.9 128 64.1
Lsat_1_v5_gn_5_49301 Lactuca sativa HOM05D006081 ORTHO05D007628 7.6e-45 184.5 182 54.4
TPR.G26808 Trifolium pratense HOM05D006081 ORTHO05D007628 7.6e-45 184.5 134 68.7
Aa31LG8G8110 Aethionema arabicum HOM05D006081 ORTHO05D007628 9.9e-45 184.1 190 53.2
Sp3g19430 Schrenkiella parvula HOM05D006081 ORTHO05D007628 1.3e-44 183.7 192 50.5
unitig_26.g10542 Utricularia gibba HOM05D006081 ORTHO05D007628 1.3e-44 183.7 180 52.8
CARHR097370 Cardamine hirsuta HOM05D006081 ORTHO05D007628 2.2e-44 183.0 193 50.3
PSO170G3586 Papaver somniferum HOM05D006081 ORTHO05D007628 6.4e-44 181.4 195 50.8
BcaC01g03506 Brassica carinata HOM05D006081 ORTHO05D007628 1.1e-43 180.6 192 51.6
BolC3t17454H Brassica oleracea HOM05D006081 ORTHO05D007628 1.1e-43 180.6 192 51.6
Sc13g0003510 Simmondsia chinensis HOM05D006081 ORTHO05D007628 1.1e-43 180.6 193 49.2
BcaB04g19166 Brassica carinata HOM05D006081 ORTHO05D007628 1.9e-43 179.9 193 50.3
C03p51690 Brassica napus HOM05D006081 ORTHO05D007628 1.9e-43 179.9 192 50.5
DCAR_030534 Daucus carota HOM05D006081 ORTHO05D007628 4.2e-43 178.7 188 51.1
Thhalv10021583m.g Eutrema salsugineum HOM05D006081 ORTHO05D007628 5.5e-43 178.3 190 50.5
BcaC05g28170 Brassica carinata HOM05D006081 ORTHO05D007628 7.1e-43 177.9 185 51.9
C05p42070 Brassica napus HOM05D006081 ORTHO05D007628 7.1e-43 177.9 185 51.9
BolC5t32937H Brassica oleracea HOM05D006081 ORTHO05D007628 7.1e-43 177.9 185 51.9
AT3G21400 Arabidopsis thaliana HOM05D006081 ORTHO05D007628 1.2e-42 177.2 189 51.9
AL3G35480 Arabidopsis lyrata HOM05D006081 ORTHO05D007628 2.7e-42 176.0 192 51.0
BcaB06g26235 Brassica carinata HOM05D006081 ORTHO05D007628 3.5e-42 175.6 187 51.3
A03p42230 Brassica napus HOM05D006081 ORTHO05D007628 4.6e-42 175.3 191 49.2
BraA03t13376Z Brassica rapa HOM05D006081 ORTHO05D007628 4.6e-42 175.3 191 49.2
Carub.0003s2143 Capsella rubella HOM05D006081 ORTHO05D007628 1.0e-41 174.1 193 48.7
Aqoxy2G03026 Aquilegia oxysepala HOM05D006081 ORTHO05D007628 1.3e-39 167.2 128 61.7
CAN.G556.12 Capsicum annuum HOM05D006081 ORTHO05D007628 1.1e-38 164.1 108 69.4
FAN12G2474 Fragaria x ananassa HOM05D006081 ORTHO05D007628 5.3e-38 161.8 112 66.1
A05p27230 Brassica napus HOM05D006081 ORTHO05D007628 1.5e-37 160.2 168 51.8
CSS0018730 Camellia sinensis var. sinensis HOM05D006081 ORTHO05D007628 5.8e-37 158.3 110 68.2
AUR62043167 Chenopodium quinoa HOM05D006081 ORTHO05D007628 1.0e-36 157.5 132 53.8
EL10Ac3g06586 Beta vulgaris HOM05D006081 ORTHO05D007628 1.7e-36 156.8 186 42.5
BraA05t21612Z Brassica rapa HOM05D006081 ORTHO05D007628 1.7e-36 156.8 168 50.6
CDE02G2676 Ceratophyllum demersum HOM05D006081 ORTHO05D000739 2.2e-36 156.4 193 47.2
CDE09G1305 Ceratophyllum demersum HOM05D006081 ORTHO05D007628 2.2e-36 156.4 189 48.7
AUR62036825 Chenopodium quinoa HOM05D006081 ORTHO05D007628 6.0e-34 148.3 154 48.7
ATR0706G092 Amborella trichopoda HOM05D006081 ORTHO05D007628 6.7e-33 144.8 125 57.6
Zm00001eb410420 Zea mays HOM05D006081 ORTHO05D007628 1.3e-31 140.6 187 40.1
TAR365G0700 Trochodendron aralioides HOM05D006081 ORTHO05D007628 1.5e-29 133.7 92 67.4
MD13G1169900 Malus domestica HOM05D006081 ORTHO05D007628 2.2e-28 129.8 131 56.5
Os12g0540700 Oryza sativa ssp. japonica HOM05D006081 ORTHO05D007628 2.9e-28 129.4 127 46.5
SEGI_25455 Sequoiadendron giganteum HOM05D006081 ORTHO05D007628 8.4e-28 127.9 184 40.2
MBI19_g12810_MAGBIO Magnolia biondii HOM05D006081 ORTHO05D007628 1.6e-26 123.6 100 55.0
Haze_01224 Corylus avellana HOM05D006081 ORTHO05D007628 3.5e-26 122.5 83 66.3
HPP92_001321 Vanilla planifolia HOM05D006081 ORTHO05D007628 8.7e-25 117.9 177 40.7
Actinidia01470 Actinidia chinensis HOM05D006081 ORTHO05D007628 4.3e-24 115.5 186 41.9
AUR62038616 Chenopodium quinoa HOM05D006081 ORTHO05D007628 1.3e-23 114.0 92 53.3
Haze_01225 Corylus avellana HOM05D006081 ORTHO05D007628 2.0e-21 106.7 100 60.0
CSS0011440 Camellia sinensis var. sinensis HOM05D006081 ORTHO05D007628 2.9e-20 102.8 109 51.4
Potri.010G024000 Populus trichocarpa HOM05D006081 ORTHO05D007628 1.9e-19 100.1 66 66.7
Pp3c1_29830 Physcomitrium patens HOM05D006081 ORTHO05D007628 1.7e-15 87.0 125 35.2
Mapoly0041s0011 Marchantia polymorpha HOM05D006081 ORTHO05D007628 1.4e-14 84.0 129 38.0
Nn5g30060 Nelumbo nucifera HOM05D006081 ORTHO05D007628 1.8e-14 83.6 102 51.0
FAN22G0279 Fragaria x ananassa HOM05D006081 ORTHO05D007628 3.1e-14 82.8 91 51.6
AagrBONN_evm.TU.Sc2ySwM_368.2309 Anthoceros agrestis HOM05D006081 ORTHO05D007628 4.1e-14 82.4 173 28.9
CBR_g29894 Chara braunii HOM05D008095 ORTHO05D010826 4.2e-11 72.4 121 30.6
BolC7t43135H Brassica oleracea HOM05D006081 ORTHO05D033520 2.4e-06 56.6 48 58.3
Hma1.2p1_1676F.1_g297010 Hydrangea macrophylla HOM05D006081 ORTHO05D007628 9.1e-06 54.7 36 72.2


User provided reference genes

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