Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 9.0e-195 683.7 428 100.0
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 9.0e-195 683.7 428 100.0
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 3.0e-182 642.1 427 91.1
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 3.7e-180 635.2 427 93.0
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 1.3e-172 610.1 427 81.5
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 5.0e-137 491.9 428 67.1
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 2.1e-135 486.5 427 66.3
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 6.1e-135 485.0 427 66.7
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 6.3e-132 474.9 427 65.6
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 1.4e-131 473.8 428 65.4
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 1.6e-130 470.3 427 64.6
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 3.5e-130 469.2 440 63.4
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 7.8e-130 468.0 427 64.6
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 6.6e-129 464.9 440 63.6
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 8.6e-129 464.5 428 64.5
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 8.6e-129 464.5 427 64.2
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.5e-128 463.8 427 64.4
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 3.3e-128 462.6 433 63.5
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 1.6e-127 460.3 428 64.0
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 2.8e-127 459.5 440 63.9
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 4.7e-127 458.8 418 65.6
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 8.0e-127 458.0 427 62.3
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 1.4e-126 457.2 434 63.8
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 1.4e-126 457.2 434 63.8
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 2.3e-126 456.4 429 66.0
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 2.0e-125 453.4 439 62.2
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 7.5e-125 451.4 438 62.3
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 1.3e-124 450.7 456 60.3
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 2.4e-123 446.4 438 61.4
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 9.2e-123 444.5 435 61.8
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 9.2e-123 444.5 437 60.0
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 1.6e-122 443.7 436 61.2
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 1.6e-122 443.7 436 61.5
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 1.0e-121 441.0 429 60.6
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 1.3e-121 440.7 427 61.1
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 1.7e-121 440.3 438 60.3
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 2.3e-121 439.9 414 63.5
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 3.0e-121 439.5 427 60.7
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 3.9e-121 439.1 427 60.2
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 5.0e-121 438.7 429 63.9
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 7.3e-120 434.9 445 57.5
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 9.5e-120 434.5 421 62.9
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 4.7e-119 432.2 438 60.0
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 6.2e-119 431.8 428 60.0
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 4.0e-118 429.1 439 59.9
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 5.2e-118 428.7 427 61.4
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 5.2e-118 428.7 428 59.8
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 5.2e-118 428.7 445 60.0
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 5.2e-118 428.7 443 59.4
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 6.8e-118 428.3 439 60.4
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 1.2e-117 427.6 429 59.0
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 1.5e-117 427.2 429 59.2
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 2.6e-117 426.4 439 59.7
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 1.7e-116 423.7 438 59.1
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 2.2e-116 423.3 428 63.8
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 3.7e-116 422.5 439 59.7
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 8.3e-116 421.4 438 57.5
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 8.3e-116 421.4 429 58.3
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 4.1e-115 419.1 428 59.8
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 4.1e-115 419.1 436 57.8
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 4.1e-115 419.1 429 59.2
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 7.0e-115 418.3 421 60.8
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 7.0e-115 418.3 436 57.8
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 9.2e-115 417.9 434 58.1
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 2.1e-114 416.8 436 58.9
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 2.1e-114 416.8 427 59.7
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 2.1e-114 416.8 427 59.7
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 7.8e-114 414.8 446 58.1
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 1.0e-113 414.5 438 57.3
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 6.6e-113 411.8 436 56.9
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 1.5e-112 410.6 437 58.6
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 2.5e-112 409.8 448 56.7
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 3.3e-112 409.5 436 57.8
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 1.2e-111 407.5 432 58.3
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 1.2e-111 407.5 432 58.3
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 2.1e-111 406.8 435 56.6
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 2.8e-111 406.4 433 58.2
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 1.1e-110 404.4 434 56.9
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 1.4e-110 404.1 439 55.4
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 3.1e-110 402.9 433 58.0
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 3.1e-110 402.9 434 56.9
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 3.4e-109 399.4 427 57.8
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 7.5e-109 398.3 372 62.6
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.1e-107 394.4 379 62.3
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 1.4e-107 394.0 427 61.1
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 2.1e-106 390.2 434 55.5
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 5.1e-105 385.6 427 61.1
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 7.3e-104 381.7 435 56.1
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 2.8e-103 379.8 428 61.2
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 2.8e-103 379.8 429 55.2
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 3.6e-103 379.4 433 56.4
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 3.6e-103 379.4 413 56.7
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 1.8e-102 377.1 467 52.5
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 1.2e-101 374.4 435 55.9
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 3.3e-96 356.3 449 50.8
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 1.1e-94 351.3 349 63.3
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 7.6e-93 345.1 352 60.8
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 1.1e-91 341.3 306 66.0
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 4.3e-88 329.3 352 55.1
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 2.8e-87 326.6 445 48.5
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 2.6e-85 320.1 420 50.0
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 4.6e-82 309.3 368 52.7
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 6.7e-81 305.4 360 54.4
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 8.7e-81 305.1 421 49.4
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.3e-80 302.8 361 53.7
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 1.5e-77 294.3 259 64.5
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 3.2e-75 286.6 448 43.1
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 1.6e-74 284.3 369 50.7
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 4.5e-69 266.2 396 45.5
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 9.3e-67 258.5 226 67.3
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 2.1e-66 257.3 267 57.7
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 3.5e-66 256.5 336 51.5
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 1.9e-64 250.8 452 41.8
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 6.5e-60 235.7 289 54.7
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 9.7e-56 221.9 360 46.4
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 7.7e-53 212.2 180 62.8
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 6.1e-50 202.6 251 51.4
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 1.4e-49 201.4 184 64.1
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 7.7e-45 185.7 221 55.7
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 1.5e-43 181.4 371 36.9
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 1.4e-41 174.9 452 34.1
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 2.3e-41 174.1 362 38.1
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 1.7e-39 167.9 144 66.7
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 1.4e-38 164.9 157 61.8
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 5.3e-38 162.9 180 57.2
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 9.1e-38 162.2 249 47.0
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 8.5e-36 155.6 149 61.1
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 1.1e-35 155.2 272 41.5
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 2.7e-34 150.6 458 30.8
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 7.7e-29 132.5 163 54.0
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 8.5e-28 129.0 134 58.2
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 3.4e-24 117.1 136 55.1
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 2.7e-21 107.5 158 46.8
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 8.9e-17 92.4 67 76.1
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 1.5e-16 91.7 107 56.1
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 1.8e-14 84.7 147 43.5
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 5.4e-14 83.2 189 39.7
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 5.4e-14 83.2 63 73.0
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 9.2e-14 82.4 95 55.8
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 1.8e-09 68.2 129 38.8
RcHm_v2.0_Chr5g0066831 Rosa chinensis HOM05D005278 ORTHO05D006500 5.2e-09 66.6 93 46.2
RcHm_v2.0_Chr4g0405851 Rosa chinensis HOM05D005278 ORTHO05D006500 4.9e-07 60.1 37 78.4
Cre01.g043400 Chlamydomonas reinhardtii HOM05D005278 ORTHO05D006500 2.4e-06 57.8 181 27.6


User provided reference genes

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