Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 0.0e+00 1105.5 572 100.0
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 6.6e-310 1066.6 572 96.5
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 1.9e-293 1011.9 572 91.8
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 4.0e-275 951.0 572 85.7
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 1.1e-219 766.9 571 71.3
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 1.3e-217 760.0 570 70.2
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 3.6e-215 751.9 570 69.5
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 8.0e-215 750.7 570 68.8
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 1.8e-214 749.6 571 70.1
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 3.4e-213 745.3 587 66.6
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 2.4e-211 739.2 568 66.9
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 9.2e-211 737.3 568 66.7
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 1.3e-209 733.4 569 67.8
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 1.5e-208 729.9 569 67.1
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 3.3e-208 728.8 570 66.8
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 1.6e-207 726.5 570 66.5
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 1.4e-206 723.4 565 67.1
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 5.2e-206 721.5 569 66.3
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 2.0e-205 719.5 570 67.5
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 2.0e-205 719.5 570 66.1
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 2.6e-205 719.2 569 67.5
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 4.4e-205 718.4 570 66.7
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.2e-204 716.1 567 66.5
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 2.9e-204 715.7 571 66.0
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 2.4e-203 712.6 565 66.2
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 5.4e-203 711.4 568 66.5
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 2.7e-202 709.1 569 65.9
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 4.6e-202 708.4 567 66.0
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 6.0e-202 708.0 565 66.4
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 6.0e-202 708.0 571 63.4
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 2.3e-201 706.1 570 66.3
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 6.6e-201 704.5 584 64.2
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 6.6e-201 704.5 565 66.5
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 1.1e-200 703.7 569 66.3
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 3.3e-200 702.2 568 64.3
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 9.5e-200 700.7 567 66.0
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.1e-199 699.5 566 65.0
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 3.6e-199 698.7 568 65.3
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 6.2e-199 698.0 572 64.5
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 5.2e-198 694.9 569 65.6
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 4.4e-197 691.8 570 63.0
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 5.8e-197 691.4 579 63.9
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 8.3e-196 687.6 520 69.6
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 1.6e-194 683.3 590 62.5
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 9.5e-192 674.1 570 61.1
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 1.8e-190 669.8 569 61.0
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 3.1e-190 669.1 568 60.9
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 6.8e-190 667.9 570 62.1
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 7.5e-189 664.5 570 61.4
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 1.3e-188 663.7 570 62.1
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 1.1e-187 660.6 570 60.7
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 1.4e-187 660.2 545 65.1
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 2.7e-186 656.0 613 58.2
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 6.6e-185 651.4 576 59.9
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 3.3e-184 649.0 516 66.5
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 4.3e-184 648.7 547 62.5
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 4.3e-184 648.7 571 59.2
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 4.3e-184 648.7 569 59.8
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 5.6e-184 648.3 578 60.4
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 4.7e-183 645.2 571 59.7
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 4.7e-183 645.2 570 60.4
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 8.1e-183 644.4 560 62.7
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 1.8e-182 643.3 572 59.6
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 3.1e-182 642.5 571 60.2
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 3.1e-182 642.5 572 60.3
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 6.8e-182 641.3 571 59.2
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 6.8e-182 641.3 592 57.4
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 3.4e-181 639.0 571 59.5
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 2.2e-180 636.3 568 59.3
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 3.8e-180 635.6 575 59.0
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 1.1e-179 634.0 571 59.5
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 1.4e-179 633.6 598 57.4
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 5.4e-179 631.7 568 59.0
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 1.6e-178 630.2 571 60.8
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 6.0e-178 628.2 572 57.0
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 1.3e-177 627.1 568 57.0
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 1.7e-177 626.7 570 57.0
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 2.3e-177 626.3 569 58.0
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 1.1e-176 624.0 570 58.6
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 1.5e-176 623.6 599 56.6
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 2.5e-176 622.9 577 57.9
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 3.3e-176 622.5 587 57.2
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 3.3e-176 622.5 529 62.2
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 8.1e-175 617.8 571 59.5
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 1.1e-174 617.5 546 60.4
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 2.4e-174 616.3 587 57.1
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 6.9e-174 614.8 610 54.8
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 2.7e-170 602.8 527 63.0
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 1.0e-169 600.9 571 58.0
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 1.7e-169 600.1 568 54.4
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 1.1e-168 597.4 455 68.4
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 4.3e-168 595.5 537 60.0
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 6.2e-167 591.7 568 55.3
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 1.4e-166 590.5 568 54.9
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 3.3e-160 569.3 532 57.7
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 2.1e-159 566.6 567 53.3
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 5.8e-157 558.5 520 57.7
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 1.7e-156 557.0 541 55.3
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 4.6e-154 548.9 533 57.0
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.0e-153 546.2 571 51.5
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 1.5e-152 543.9 546 59.0
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 3.7e-151 539.3 569 52.7
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.4e-150 536.6 527 53.7
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 3.9e-145 519.2 567 52.6
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 3.7e-143 512.7 548 49.6
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 3.6e-138 496.1 567 50.6
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 1.1e-136 491.1 391 66.2
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 9.7e-128 461.5 585 42.2
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 1.7e-124 450.7 430 53.5
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 2.2e-124 450.3 333 70.3
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 6.1e-122 442.2 567 45.9
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 1.5e-112 411.0 326 66.9
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 1.8e-105 387.5 284 70.8
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 2.7e-101 373.6 288 66.3
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 7.2e-99 365.5 386 54.1
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 2.8e-98 363.6 556 36.9
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 1.4e-94 351.3 316 57.6
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 2.2e-87 327.4 292 59.2
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 4.6e-85 319.7 230 72.6
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 6.0e-85 319.3 283 62.2
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 1.4e-78 298.1 529 33.8
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 2.4e-70 270.8 538 32.0
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 1.1e-67 261.9 300 52.7
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 1.5e-67 261.5 176 73.9
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 1.7e-60 238.0 204 60.3
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 1.1e-57 228.8 223 52.9
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 1.4e-57 228.4 647 27.0
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 5.8e-56 223.0 314 46.2
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 2.0e-48 198.0 282 46.5
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 5.7e-35 153.3 136 63.2
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 1.3e-31 142.1 157 45.2
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 2.7e-29 134.4 163 47.9
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 4.1e-25 120.6 107 64.5
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 1.7e-23 115.2 81 71.6
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 1.2e-21 109.0 80 71.2
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 4.6e-21 107.1 88 58.0
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.7e-18 98.6 76 63.2
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 1.1e-17 95.9 290 27.9
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 5.0e-15 87.0 112 43.8
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.5e-14 84.7 68 60.3
MELO3C034510.2 Cucumis melo HOM05D017495 ORTHO05D167753 3.2e-14 84.3 48 81.2
MELO3C027756.2 Cucumis melo HOM05D017495 ORTHO05D168972 4.7e-13 80.5 46 80.4
MELO3C034872.2 Cucumis melo HOM05D017495 ORTHO05D169777 7.9e-13 79.7 46 80.4
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 3.9e-12 77.4 82 43.9
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 7.4e-11 73.2 70 55.7
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 7.4e-11 73.2 70 55.7
Cfa026774 Carpinus fangiana HOM05D004734 ORTHO05D126311 3.7e-10 70.9 252 24.6
MELO3C030829.2 Cucumis melo HOM05D017495 ORTHO05D000031 2.2e-07 61.6 33 87.9
arahy.Tifrunner.gnm1.ann1.RUY2TK Arachis hypogaea HOM05D005906 ORTHO05D007359 1.1e-06 59.3 35 85.7
FvH4_3g20454 Fragaria vesca HOM05D004734 ORTHO05D196162 3.2e-06 57.8 107 36.4
MELO3C031508.2 Cucumis melo HOM05D017495 ORTHO05D169201 7.2e-06 56.6 50 62.0


User provided reference genes

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