Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 0.0e+00 1464.9 807 100.0
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 0.0e+00 1197.2 822 82.8
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 1.3e-279 966.5 864 68.5
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 1.9e-198 696.8 427 94.4
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 4.3e-174 615.9 766 52.2
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 1.5e-163 580.9 847 47.2
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 3.0e-159 566.6 920 44.3
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 2.4e-156 557.0 892 46.1
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 6.5e-154 548.9 782 50.1
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 1.4e-151 541.2 834 46.0
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 6.5e-146 522.3 744 48.7
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 6.8e-143 512.3 773 48.4
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 2.0e-142 510.8 773 48.3
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 4.4e-142 509.6 800 46.0
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 2.2e-141 507.3 689 50.5
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 2.2e-141 507.3 773 48.0
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 8.3e-141 505.4 854 44.0
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 4.1e-140 503.1 878 42.7
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 2.0e-139 500.7 273 94.1
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 4.2e-137 493.0 776 47.2
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.2e-136 491.5 724 43.0
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 3.6e-136 490.0 821 43.0
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 8.0e-136 488.8 802 45.6
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 1.7e-133 481.1 686 44.6
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 4.9e-133 479.6 797 40.7
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 2.4e-132 477.2 810 44.0
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 3.1e-132 476.9 819 42.1
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 9.2e-132 475.3 899 41.3
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 5.9e-131 472.6 663 43.6
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 1.3e-130 471.5 707 46.3
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 1.7e-130 471.1 802 43.9
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 3.3e-129 466.8 655 48.4
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 2.8e-128 463.8 856 40.9
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 4.7e-128 463.0 792 45.2
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 1.4e-127 461.5 711 44.3
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 5.2e-127 459.5 820 41.2
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 6.8e-127 459.1 703 42.7
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 8.9e-127 458.8 767 44.5
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 3.4e-126 456.8 843 41.6
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 4.4e-126 456.4 792 42.4
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 7.5e-126 455.7 788 44.8
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 1.1e-124 451.8 803 45.6
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 1.9e-124 451.1 835 43.7
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 4.1e-124 449.9 814 43.6
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 7.0e-124 449.1 836 40.8
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 1.2e-123 448.4 826 43.3
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 1.2e-123 448.4 790 42.3
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 7.8e-123 445.7 788 43.1
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 3.9e-122 443.4 743 42.1
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 1.2e-120 438.3 872 38.8
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 1.6e-120 438.0 799 40.8
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 2.8e-120 437.2 863 38.9
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 8.0e-120 435.6 796 41.2
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 1.4e-119 434.9 678 41.0
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 4.0e-119 433.3 777 40.5
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 7.5e-118 429.1 735 44.6
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 1.7e-117 427.9 933 37.2
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 1.9e-116 424.5 813 40.3
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 3.5e-115 420.2 835 38.0
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 6.0e-115 419.5 808 34.9
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 1.3e-114 418.3 853 40.7
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 1.1e-113 415.2 756 36.9
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 1.5e-113 414.8 679 38.9
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 9.5e-113 412.1 812 35.5
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 1.1e-111 408.7 747 36.5
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 8.9e-111 405.6 807 35.9
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 2.9e-109 400.6 923 38.1
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 6.4e-109 399.4 879 38.2
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 4.6e-107 393.3 697 40.2
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 4.6e-107 393.3 680 37.8
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 7.8e-107 392.5 713 42.4
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 1.3e-106 391.7 796 38.1
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 1.3e-106 391.7 796 38.1
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 1.7e-106 391.3 867 35.1
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 2.3e-106 391.0 796 38.1
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 8.6e-106 389.0 780 37.9
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 1.5e-105 388.3 822 41.1
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 7.3e-105 386.0 684 37.4
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 1.2e-102 378.6 818 37.3
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 1.2e-102 378.6 702 37.6
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 6.0e-99 366.3 695 37.4
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 3.0e-98 364.0 708 39.5
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 3.9e-98 363.6 682 36.4
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 4.3e-97 360.1 825 36.2
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 2.1e-96 357.8 613 38.2
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 2.8e-96 357.5 785 35.7
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 4.4e-94 350.1 679 37.7
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 4.4e-94 350.1 818 35.9
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 5.8e-94 349.7 742 36.5
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 7.6e-94 349.4 703 35.4
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 1.4e-92 345.1 697 34.6
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 9.3e-92 342.4 845 37.0
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 6.0e-91 339.7 930 30.3
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 1.0e-90 339.0 774 33.5
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 3.0e-90 337.4 697 37.4
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 1.9e-89 334.7 753 37.6
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 3.3e-89 334.0 678 34.7
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 5.3e-87 326.6 808 33.0
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 9.0e-87 325.9 715 33.8
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 3.4e-86 323.9 716 33.2
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 3.4e-86 323.9 784 34.6
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 9.9e-86 322.4 775 32.6
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 6.4e-85 319.7 846 36.3
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 1.2e-83 315.5 645 40.9
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 6.0e-83 313.2 912 32.7
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 1.3e-82 312.0 796 32.3
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 2.5e-81 307.8 690 36.4
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 1.8e-79 301.6 943 30.5
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 5.8e-78 296.6 876 30.5
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 6.4e-77 293.1 768 37.9
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 7.9e-75 286.2 892 32.5
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 3.9e-66 257.3 978 32.3
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 5.1e-66 256.9 280 57.5
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 5.3e-63 246.9 674 32.9
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.5e-62 245.4 770 28.8
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 1.3e-61 242.3 770 31.3
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 1.2e-59 235.7 300 47.3
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 2.1e-59 235.0 767 27.8
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 4.2e-52 210.7 274 45.6
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 9.7e-49 199.5 172 52.3
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 3.7e-48 197.6 757 25.2
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 1.5e-41 175.6 215 47.9
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 1.7e-40 172.2 289 39.1
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.6e-38 165.6 205 44.4
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 2.5e-36 158.3 369 36.9
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 2.2e-32 145.2 145 52.4
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 8.3e-32 143.3 260 40.4
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 4.0e-26 124.4 272 36.0
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 1.3e-24 119.4 504 29.2
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 1.5e-20 105.9 783 23.8
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 4.2e-20 104.4 224 32.1
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 9.5e-20 103.2 215 33.5
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 1.8e-18 99.0 311 28.6
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 2.6e-17 95.1 134 40.3
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 2.8e-16 91.7 76 57.9
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 2.4e-15 88.6 423 26.2
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 1.7e-13 82.4 178 32.0
FvH4_4g03480 Fragaria vesca HOM05D014995 ORTHO05D029569 5.2e-10 70.9 61 55.7
FAN12G1500 Fragaria x ananassa HOM05D005245 ORTHO05D029569 1.5e-09 69.3 61 54.1
Sabra10G0125200 Salix brachista HOM05D000508 ORTHO05D000371 2.4e-07 62.0 93 40.9
Zm00001eb152820 Zea mays HOM05D056051 ORTHO05D049612 2.0e-06 58.9 158 25.9


User provided reference genes

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