Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G014900 Cucumis sativus L. HOM05D010941 ORTHO05D000412 3.6e-74 281.6 148 100.0
ClCG02G022070 Citrullus lanatus HOM05D010941 ORTHO05D000412 2.5e-59 232.3 145 82.8
MELO3C035176.2 Cucumis melo HOM05D010941 ORTHO05D000412 5.2e-57 224.6 128 89.1
Sed0003716 Sechium edule HOM05D010941 ORTHO05D000412 7.2e-51 204.1 145 72.4
Duzib170G0821 Durio zibethinus HOM05D000581 ORTHO05D000412 6.6e-28 127.9 149 49.7
Gorai.009G087000 Gossypium raimondii HOM05D000581 ORTHO05D000412 6.6e-28 127.9 148 48.0
QL01p013207 Quercus lobata HOM05D000581 ORTHO05D000412 3.3e-27 125.6 138 52.9
Glyma.13G317900 Glycine max HOM05D000581 ORTHO05D000412 2.1e-26 122.9 143 49.0
CiPaw.13G138400 Carya illinoinensis HOM05D000581 ORTHO05D000412 4.0e-25 118.6 140 47.1
Cfa010058 Carpinus fangiana HOM05D000581 ORTHO05D000412 4.9e-23 111.7 110 57.3
Medtr2g085155 Medicago truncatula HOM05D010941 ORTHO05D000412 8.3e-23 110.9 168 38.1
PGR102G2836 Punica granatum HOM05D000581 ORTHO05D000412 1.4e-22 110.2 139 48.9
Phvul.005G125700 Phaseolus vulgaris HOM05D000581 ORTHO05D000412 7.0e-22 107.8 143 47.6
Medtr2g086010 Medicago truncatula HOM05D010941 ORTHO05D000412 2.7e-21 105.9 144 37.5
Prupe.6G124800 Prunus persica HOM05D000581 ORTHO05D000412 1.0e-20 104.0 106 57.5
VMungo1080G1526 Vigna mungo HOM05D000581 ORTHO05D000412 2.3e-20 102.8 148 43.9
Gohir.D05G085200 Gossypium hirsutum HOM05D010941 ORTHO05D000412 2.5e-19 99.4 106 47.2
TPR.G23789 Trifolium pratense HOM05D010941 ORTHO05D000412 7.3e-19 97.8 122 43.4
Gohir.A05G082300 Gossypium hirsutum HOM05D010941 ORTHO05D000412 1.6e-18 96.7 106 47.2
Sabra09G0112800 Salix brachista HOM05D000581 ORTHO05D000412 2.1e-18 96.3 115 48.7
Lalb_Chr24g0395251 Lupinus albus HOM05D000581 ORTHO05D000412 4.7e-18 95.1 145 40.0
Dinv29449 Davidia involucrata HOM05D000581 ORTHO05D000412 1.7e-15 86.7 134 38.8
Lj3g0023809 Lotus japonicus HOM05D010941 ORTHO05D000412 2.2e-15 86.3 145 37.2
GSVIVG01036181001 Vitis vinifera HOM05D010941 ORTHO05D000412 3.7e-15 85.5 109 46.8
Ciclev10029511m.g Citrus clementina HOM05D000581 ORTHO05D000412 4.9e-15 85.1 141 32.6
Thecc.09G287400 Theobroma cacao HOM05D010941 ORTHO05D000412 5.4e-14 81.6 143 36.4
Duzib168G0145 Durio zibethinus HOM05D010941 ORTHO05D000412 1.0e-12 77.4 98 43.9
Duzib093G1459 Durio zibethinus HOM05D000581 ORTHO05D000412 1.3e-12 77.0 141 34.8
Cpa.g.sc32.127 Carica papaya HOM05D000581 ORTHO05D000412 1.7e-12 76.6 86 53.5
Thecc.05G085200 Theobroma cacao HOM05D000581 ORTHO05D000412 1.7e-12 76.6 141 33.3
MBI17_g16875_MAGBIO Magnolia biondii HOM05D000581 ORTHO05D000412 5.1e-12 75.1 146 30.1
Solyc12g036230.3 Solanum lycopersicum HOM05D010941 ORTHO05D000412 4.3e-11 72.0 143 30.8
Aa31LG8G8190 Aethionema arabicum HOM05D000581 ORTHO05D000412 7.3e-11 71.2 141 30.5
Duzib128G0312 Durio zibethinus HOM05D000581 ORTHO05D000412 7.3e-11 71.2 141 30.5
Gohir.D09G136500 Gossypium hirsutum HOM05D000581 ORTHO05D000412 7.3e-11 71.2 148 29.7
AagrBONN_evm.TU.Sc2ySwM_117.2310 Anthoceros agrestis HOM05D000581 ORTHO05D000412 9.5e-11 70.9 142 28.9
Dinv31661 Davidia involucrata HOM05D000581 ORTHO05D000412 9.5e-11 70.9 160 28.8
Gorai.006G156600 Gossypium raimondii HOM05D000581 ORTHO05D000412 9.5e-11 70.9 148 29.7
Manes.09G059100 Manihot esculenta HOM05D000581 ORTHO05D000412 1.2e-10 70.5 141 31.2
Ciclev10002761m.g Citrus clementina HOM05D000581 ORTHO05D000412 1.6e-10 70.1 140 29.3
Sopen12g016360 Solanum pennellii HOM05D010941 ORTHO05D000412 2.1e-10 69.7 143 30.1
CDE08G0017 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 4.7e-10 68.6 146 30.8
VMungo0720G0007 Vigna mungo HOM05D000581 ORTHO05D000412 4.7e-10 68.6 136 28.7
Manes.08G023500 Manihot esculenta HOM05D000581 ORTHO05D000412 6.2e-10 68.2 146 32.9
CDE06G0806 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 8.1e-10 67.8 141 31.9
Thhalv10021689m.g Eutrema salsugineum HOM05D000581 ORTHO05D000412 1.4e-09 67.0 141 28.4
TAR627G1138 Trochodendron aralioides HOM05D000581 ORTHO05D000412 1.4e-09 67.0 146 30.1
Actinidia05735 Actinidia chinensis HOM05D000581 ORTHO05D000412 1.8e-09 66.6 136 27.9
BcaB04g20584 Brassica carinata HOM05D000581 ORTHO05D000412 1.8e-09 66.6 141 27.7
FvH4_6g18230 Fragaria vesca HOM05D018852 ORTHO05D022587 1.8e-09 66.6 148 31.8
FAN05G4728 Fragaria x ananassa HOM05D000581 ORTHO05D000412 1.8e-09 66.6 141 29.1
RcHm_v2.0_Chr3g0472651 Rosa chinensis HOM05D018852 ORTHO05D000412 1.8e-09 66.6 148 30.4
Glyma.11G187300 Glycine max HOM05D000581 ORTHO05D000412 3.1e-09 65.9 139 26.6
Sp3g19550 Schrenkiella parvula HOM05D000581 ORTHO05D000412 3.1e-09 65.9 141 27.7
AL3G35620 Arabidopsis lyrata HOM05D000581 ORTHO05D000412 4.0e-09 65.5 141 28.4
AT3G21510 Arabidopsis thaliana HOM05D000581 ORTHO05D000412 4.0e-09 65.5 132 28.8
CSS0026132 Camellia sinensis var. sinensis HOM05D000581 ORTHO05D000412 4.0e-09 65.5 138 26.8
Carub.0003s2155 Capsella rubella HOM05D000581 ORTHO05D000412 4.0e-09 65.5 141 28.4
CARHR097440 Cardamine hirsuta HOM05D000581 ORTHO05D000412 4.0e-09 65.5 141 28.4
Lj9A678T39 Lonicera japonica HOM05D000581 ORTHO05D000412 4.0e-09 65.5 130 28.5
Mapoly0091s0072 Marchantia polymorpha HOM05D000581 ORTHO05D000412 4.0e-09 65.5 141 26.2
FAN05G4004 Fragaria x ananassa HOM05D000581 ORTHO05D000412 5.2e-09 65.1 141 28.4
TAR365G0048 Trochodendron aralioides HOM05D000581 ORTHO05D000412 5.2e-09 65.1 141 27.7
BcaB04g19172 Brassica carinata HOM05D000581 ORTHO05D000412 6.8e-09 64.7 141 26.2
FvH4_6g04970 Fragaria vesca HOM05D000581 ORTHO05D000412 6.8e-09 64.7 141 28.4
FAN02G3497 Fragaria x ananassa HOM05D000581 ORTHO05D000412 6.8e-09 64.7 141 28.4
Gohir.A09G232600 Gossypium hirsutum HOM05D000581 ORTHO05D000412 6.8e-09 64.7 141 29.8
THA.LOC104820231 Tarenaya hassleriana HOM05D000581 ORTHO05D000412 6.8e-09 64.7 141 24.8
TWI73G0342 Tripterygium wilfordii HOM05D000581 ORTHO05D000412 6.8e-09 64.7 141 27.7
Atru.chr2.525 Acer truncatum HOM05D000581 ORTHO05D000412 8.9e-09 64.3 141 26.2
Sc16g0008270 Simmondsia chinensis HOM05D000581 ORTHO05D000412 8.9e-09 64.3 136 27.9
CSS0034339 Camellia sinensis var. sinensis HOM05D000581 ORTHO05D000412 1.2e-08 63.9 135 25.2
Duzib128G2008 Durio zibethinus HOM05D000581 ORTHO05D000412 1.5e-08 63.5 130 26.9
Glyma.10G157800 Glycine max HOM05D000581 ORTHO05D000412 1.5e-08 63.5 136 26.5
Gohir.D09G233700 Gossypium hirsutum HOM05D000581 ORTHO05D000412 1.5e-08 63.5 141 29.1
BcaC09g49088 Brassica carinata HOM05D000581 ORTHO05D000412 2.0e-08 63.2 141 27.0
A01p33390 Brassica napus HOM05D000581 ORTHO05D000412 2.6e-08 62.8 141 27.0
C01p42660 Brassica napus HOM05D000581 ORTHO05D000412 2.6e-08 62.8 132 27.3
BolC1t04222H Brassica oleracea HOM05D000581 ORTHO05D000412 2.6e-08 62.8 132 27.3
BraA01t03461Z Brassica rapa HOM05D000581 ORTHO05D000412 2.6e-08 62.8 141 27.0
Cc02_g32420 Coffea canephora HOM05D000581 ORTHO05D000412 2.6e-08 62.8 137 26.3
PGR004G2822 Punica granatum HOM05D000581 ORTHO05D000412 2.6e-08 62.8 132 26.5
Ca_10080_v3 Cicer arietinum L. HOM05D000581 ORTHO05D000412 3.4e-08 62.4 136 26.5
Duzib151G0330 Durio zibethinus HOM05D000581 ORTHO05D000412 3.4e-08 62.4 141 25.5
Duzib212G0159 Durio zibethinus HOM05D000581 ORTHO05D000412 3.4e-08 62.4 141 25.5
FAN09G3412 Fragaria x ananassa HOM05D000581 ORTHO05D000412 3.4e-08 62.4 141 27.7
Gorai.006G256600 Gossypium raimondii HOM05D000581 ORTHO05D000412 3.4e-08 62.4 141 29.1
Medtr1g082290 Medicago truncatula HOM05D000581 ORTHO05D000412 3.4e-08 62.4 129 26.4
RcHm_v2.0_Chr3g0453481 Rosa chinensis HOM05D000581 ORTHO05D000412 4.4e-08 62.0 139 25.9
CSS0047346 Camellia sinensis var. sinensis HOM05D000581 ORTHO05D000412 5.8e-08 61.6 136 25.7
Cpa.g.sc16.84 Carica papaya HOM05D000581 ORTHO05D000412 5.8e-08 61.6 132 26.5
Haze_23422 Corylus avellana HOM05D010941 ORTHO05D000412 5.8e-08 61.6 105 40.0
Gohir.D10G164000 Gossypium hirsutum HOM05D000581 ORTHO05D000412 5.8e-08 61.6 141 25.5
Lalb_Chr02g0148471 Lupinus albus HOM05D000581 ORTHO05D000412 5.8e-08 61.6 136 27.2
EL10Ac4g09288 Beta vulgaris HOM05D000581 ORTHO05D000412 7.6e-08 61.2 132 24.2
Gohir.A10G104700 Gossypium hirsutum HOM05D000581 ORTHO05D000412 7.6e-08 61.2 141 25.5
Lj6g0021208 Lotus japonicus HOM05D000373 ORTHO05D001146 7.6e-08 61.2 130 25.4
CiPaw.01G155900 Carya illinoinensis HOM05D000581 ORTHO05D000412 9.9e-08 60.8 141 24.1
Ca_13452_v3 Cicer arietinum L. HOM05D000581 ORTHO05D000412 9.9e-08 60.8 130 25.4
Thecc.04G273700 Theobroma cacao HOM05D000581 ORTHO05D000412 9.9e-08 60.8 141 25.5
Actinidia40207 Actinidia chinensis HOM05D000581 ORTHO05D000412 1.3e-07 60.5 141 25.5
QL01p013198 Quercus lobata HOM05D000581 ORTHO05D000412 1.3e-07 60.5 108 25.9
COL.COLO4_13557 Corchorus olitorius HOM05D000581 ORTHO05D000412 1.7e-07 60.1 136 25.7
Migut.G00235 Erythranthe guttata HOM05D000581 ORTHO05D000412 1.7e-07 60.1 141 24.8
Medtr2g020770 Medicago truncatula HOM05D000581 ORTHO05D000412 1.7e-07 60.1 130 26.2
COL.COLO4_19933 Corchorus olitorius HOM05D010941 ORTHO05D000412 2.2e-07 59.7 112 34.8
Duzib177G0416 Durio zibethinus HOM05D000581 ORTHO05D000412 2.2e-07 59.7 136 25.0
Eucgr.B01218 Eucalyptus grandis HOM05D000581 ORTHO05D000412 2.2e-07 59.7 141 25.5
Gohir.D13G178400 Gossypium hirsutum HOM05D000581 ORTHO05D000412 2.2e-07 59.7 141 27.7
Gorai.013G203600 Gossypium raimondii HOM05D000581 ORTHO05D000412 2.2e-07 59.7 141 27.7
Hma1.2p1_0643F.1_g194570 Hydrangea macrophylla HOM05D000581 ORTHO05D000412 2.2e-07 59.7 130 25.4
Manes.15G019500 Manihot esculenta HOM05D000581 ORTHO05D000412 2.2e-07 59.7 130 24.6
Phvul.006G159300 Phaseolus vulgaris HOM05D000581 ORTHO05D000412 2.2e-07 59.7 130 26.2
MSTRG.3966 Avicennia marina HOM05D000581 ORTHO05D000412 2.9e-07 59.3 130 24.6
CSS0039077 Camellia sinensis var. sinensis HOM05D010941 ORTHO05D000412 2.9e-07 59.3 83 45.8
Dinv38343 Davidia involucrata HOM05D000581 ORTHO05D000412 2.9e-07 59.3 130 24.6
Duzib170G0963 Durio zibethinus HOM05D000581 ORTHO05D000412 2.9e-07 59.3 140 26.4
Glyma.15G099800 Glycine max HOM05D000581 ORTHO05D000412 2.9e-07 59.3 130 26.2
VMungo0540G1727 Vigna mungo HOM05D000581 ORTHO05D000412 2.9e-07 59.3 130 26.2
GSVIVG01017840001 Vitis vinifera HOM05D000581 ORTHO05D000412 2.9e-07 59.3 130 25.4
Gohir.A13G172600 Gossypium hirsutum HOM05D000581 ORTHO05D000412 3.8e-07 58.9 141 27.7
Actinidia23447 Actinidia chinensis HOM05D000581 ORTHO05D000412 4.9e-07 58.5 141 24.8
Gohir.A09G138100 Gossypium hirsutum HOM05D000581 ORTHO05D000412 4.9e-07 58.5 110 32.7
Psat1g186240 Pisum sativum HOM05D000581 ORTHO05D000412 4.9e-07 58.5 130 25.4
Dinv40236 Davidia involucrata HOM05D000581 ORTHO05D000412 6.4e-07 58.2 136 25.0
TPR.G18038 Trifolium pratense HOM05D000581 ORTHO05D000412 8.4e-07 57.8 129 26.4
TWI12G0413 Tripterygium wilfordii HOM05D000581 ORTHO05D000412 1.1e-06 57.4 136 22.8
Glyma.07G253100 Glycine max HOM05D000581 ORTHO05D000412 1.4e-06 57.0 130 25.4
Oeu044805.1 Olea europaea HOM05D000581 ORTHO05D000412 1.9e-06 56.6 141 22.0
VMungo0540G0452 Vigna mungo HOM05D000581 ORTHO05D000412 1.9e-06 56.6 138 22.5
MSTRG.24770 Avicennia marina HOM05D000581 ORTHO05D000412 2.4e-06 56.2 141 22.0
Potri.010G027100 Populus trichocarpa HOM05D000581 ORTHO05D000412 2.4e-06 56.2 130 23.8
VMungo1215G2029 Vigna mungo HOM05D000581 ORTHO05D000412 3.2e-06 55.8 130 25.4
MSTRG.21825 Avicennia marina HOM05D000581 ORTHO05D000412 4.2e-06 55.5 141 22.7
CSS0031946 Camellia sinensis var. sinensis HOM05D000581 ORTHO05D000412 4.2e-06 55.5 141 24.8
FAN07G2395 Fragaria x ananassa HOM05D000581 ORTHO05D000412 4.2e-06 55.5 130 25.4
FAN17G2675 Fragaria x ananassa HOM05D000581 ORTHO05D000412 4.2e-06 55.5 130 24.6
Phvul.003G099000 Phaseolus vulgaris HOM05D000581 ORTHO05D000412 4.2e-06 55.5 130 24.6
Thecc.09G288300 Theobroma cacao HOM05D000581 ORTHO05D000412 4.2e-06 55.5 132 26.5
FvH4_4g16820 Fragaria vesca HOM05D000581 ORTHO05D000412 5.4e-06 55.1 130 24.6
FAN12G2071 Fragaria x ananassa HOM05D000581 ORTHO05D000412 5.4e-06 55.1 130 24.6
FAN12G3718 Fragaria x ananassa HOM05D000581 ORTHO05D000412 5.4e-06 55.1 130 24.6
HanXRQChr09g0276221 Helianthus annuus HOM05D000581 ORTHO05D000412 5.4e-06 55.1 126 27.0
Nitab4.5_0008107g0010 Nicotiana tabacum HOM05D000581 ORTHO05D000412 5.4e-06 55.1 136 23.5
Potri.004G185900 Populus trichocarpa HOM05D000581 ORTHO05D000412 5.4e-06 55.1 135 28.1
Prupe.1G145400 Prunus persica HOM05D000581 ORTHO05D000412 5.4e-06 55.1 130 25.4
QL06p006489 Quercus lobata HOM05D000581 ORTHO05D000412 5.4e-06 55.1 141 23.4
HPP92_003275 Vanilla planifolia HOM05D000581 ORTHO05D000412 5.4e-06 55.1 131 28.2
MD13G1176300 Malus domestica HOM05D000581 ORTHO05D000412 7.1e-06 54.7 130 24.6
Os08g0557700 Oryza sativa ssp. japonica HOM05D000581 ORTHO05D000412 7.1e-06 54.7 140 25.7


User provided reference genes

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