Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G014810 Cucumis sativus L. HOM05D004126 ORTHO05D004818 5.5e-113 411.0 208 100.0
ClCG02G021980 Citrullus lanatus HOM05D004126 ORTHO05D004818 4.4e-30 135.6 85 81.2
ClCG02G021990 Citrullus lanatus HOM05D004126 ORTHO05D004818 2.4e-28 129.8 71 91.5
MELO3C021443.2 Cucumis melo HOM05D004126 ORTHO05D004818 3.2e-28 129.4 67 91.0
Sed0026235 Sechium edule HOM05D004126 ORTHO05D004818 1.2e-27 127.5 66 92.4
Sed0008155 Sechium edule HOM05D004126 ORTHO05D004818 4.6e-27 125.6 66 92.4
SalBow3G0427 Salvia bowleyana HOM05D004126 ORTHO05D004818 1.0e-26 124.4 83 73.5
Ciclev10029753m.g Citrus clementina HOM05D004126 ORTHO05D004818 2.3e-26 123.2 66 89.4
CANSAT54G1468 Cannabis sativa HOM05D004126 ORTHO05D004818 3.9e-26 122.5 71 80.3
Glyma.12G182500 Glycine max HOM05D004126 ORTHO05D004818 5.1e-26 122.1 66 87.9
Potri.001G460200 Populus trichocarpa HOM05D004126 ORTHO05D004818 5.1e-26 122.1 66 89.4
arahy.Tifrunner.gnm1.ann1.A0MYZQ Arachis hypogaea HOM05D004126 ORTHO05D004818 6.6e-26 121.7 66 86.4
arahy.Tifrunner.gnm1.ann1.IBK94M Arachis hypogaea HOM05D004126 ORTHO05D004818 6.6e-26 121.7 66 86.4
MD11G1159300 Malus domestica HOM05D004126 ORTHO05D004818 6.6e-26 121.7 81 76.5
arahy.Tifrunner.gnm1.ann1.M99YM4 Arachis hypogaea HOM05D004126 ORTHO05D004818 8.7e-26 121.3 66 84.8
arahy.Tifrunner.gnm1.ann1.S740RW Arachis hypogaea HOM05D004126 ORTHO05D004818 8.7e-26 121.3 66 84.8
Sabra16G0311900 Salix brachista HOM05D004126 ORTHO05D004818 8.7e-26 121.3 66 89.4
ECA238G2243 Erigeron canadensis HOM05D004126 ORTHO05D004818 1.1e-25 120.9 66 86.4
Potri.011G156400 Populus trichocarpa HOM05D004126 ORTHO05D004818 1.1e-25 120.9 66 86.4
Migut.D02341 Erythranthe guttata HOM05D004126 ORTHO05D004818 1.5e-25 120.6 67 83.6
THA.LOC109117263 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 1.5e-25 120.6 66 84.8
Glyma.11G187900 Glycine max HOM05D004126 ORTHO05D004818 1.9e-25 120.2 66 83.3
Oeu050197.1 Olea europaea HOM05D004126 ORTHO05D004818 1.9e-25 120.2 66 84.8
Actinidia07223 Actinidia chinensis HOM05D004126 ORTHO05D004818 2.5e-25 119.8 66 86.4
CiPaw.14G102800 Carya illinoinensis HOM05D004126 ORTHO05D004818 2.5e-25 119.8 71 77.5
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 2.5e-25 119.8 77 77.9
Glyma.12G086600 Glycine max HOM05D004126 ORTHO05D004818 2.5e-25 119.8 66 83.3
Phvul.005G126200 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 2.5e-25 119.8 66 86.4
CARHR227690 Cardamine hirsuta HOM05D004126 ORTHO05D004818 3.3e-25 119.4 66 84.8
ECA248G1359 Erigeron canadensis HOM05D004126 ORTHO05D004818 3.3e-25 119.4 66 84.8
AUR62003964 Chenopodium quinoa HOM05D004126 ORTHO05D004818 4.3e-25 119.0 66 87.9
Phvul.011G091700 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 4.3e-25 119.0 66 83.3
QL01p013387 Quercus lobata HOM05D004126 ORTHO05D004818 4.3e-25 119.0 70 80.0
Sp7g19190 Schrenkiella parvula HOM05D004126 ORTHO05D004818 4.3e-25 119.0 66 84.8
BcaC09g51261 Brassica carinata HOM05D004126 ORTHO05D004818 5.6e-25 118.6 66 83.3
C01p15030 Brassica napus HOM05D004126 ORTHO05D004818 5.6e-25 118.6 66 83.3
BolC1t01452H Brassica oleracea HOM05D004126 ORTHO05D004818 5.6e-25 118.6 66 83.3
Lsat_1_v5_gn_2_95660 Lactuca sativa HOM05D004126 ORTHO05D004818 5.6e-25 118.6 66 83.3
Glyma.13G318450 Glycine max HOM05D004126 ORTHO05D004818 7.3e-25 118.2 66 84.8
Gohir.D08G014400 Gossypium hirsutum HOM05D004126 ORTHO05D004818 7.3e-25 118.2 66 87.9
Gorai.004G008800 Gossypium raimondii HOM05D004126 ORTHO05D004818 7.3e-25 118.2 66 87.9
HanXRQChr04g0094651 Helianthus annuus HOM05D004126 ORTHO05D004818 7.3e-25 118.2 71 80.3
MD03G1165300 Malus domestica HOM05D004126 ORTHO05D004818 7.3e-25 118.2 66 84.8
Oeu035542.1 Olea europaea HOM05D004126 ORTHO05D004818 7.3e-25 118.2 66 84.8
Actinidia35453 Actinidia chinensis HOM05D004126 ORTHO05D004818 9.6e-25 117.9 97 60.8
BraA01t01191Z Brassica rapa HOM05D004126 ORTHO05D004818 9.6e-25 117.9 66 83.3
Eucgr.J00455 Eucalyptus grandis HOM05D004126 ORTHO05D004818 9.6e-25 117.9 75 73.3
FAN16G2018 Fragaria x ananassa HOM05D004126 ORTHO05D004818 9.6e-25 117.9 66 86.4
FAN21G0712 Fragaria x ananassa HOM05D004126 ORTHO05D004818 9.6e-25 117.9 66 86.4
FAN25G0231 Fragaria x ananassa HOM05D004126 ORTHO05D004818 9.6e-25 117.9 66 86.4
Thecc.09G289400 Theobroma cacao HOM05D004126 ORTHO05D004818 9.6e-25 117.9 66 86.4
Gohir.D08G014300 Gossypium hirsutum HOM05D004126 ORTHO05D004818 1.2e-24 117.5 66 86.4
Gorai.004G008700 Gossypium raimondii HOM05D004126 ORTHO05D004818 1.2e-24 117.5 66 86.4
EL10Ac9g23026 Beta vulgaris HOM05D004126 ORTHO05D004818 1.6e-24 117.1 66 86.4
Lalb_Chr24g0395191 Lupinus albus HOM05D004126 ORTHO05D004818 1.6e-24 117.1 66 84.8
AUR62025834 Chenopodium quinoa HOM05D004126 ORTHO05D004818 2.1e-24 116.7 66 84.8
AUR62029880 Chenopodium quinoa HOM05D004126 ORTHO05D004818 2.1e-24 116.7 66 84.8
Peaxi162Scf00114g00210 Petunia axillaris HOM05D004126 ORTHO05D004818 2.1e-24 116.7 66 80.3
AL7G33020 Arabidopsis lyrata HOM05D004126 ORTHO05D004818 2.8e-24 116.3 66 83.3
AT4G21105 Arabidopsis thaliana HOM05D004126 ORTHO05D004818 2.8e-24 116.3 66 83.3
BcaC01g00712 Brassica carinata HOM05D004126 ORTHO05D004818 2.8e-24 116.3 66 83.3
BolC3t20632H Brassica oleracea HOM05D004126 ORTHO05D004818 2.8e-24 116.3 66 83.3
Dinv29439 Davidia involucrata HOM05D004126 ORTHO05D004818 2.8e-24 116.3 76 75.0
Prupe.6G122400 Prunus persica HOM05D004126 ORTHO05D004818 2.8e-24 116.3 66 83.3
PGR119G0779 Punica granatum HOM05D004126 ORTHO05D004818 2.8e-24 116.3 66 83.3
THA.LOC104800546 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 2.8e-24 116.3 66 81.8
TPR.G28100 Trifolium pratense HOM05D004126 ORTHO05D004818 2.8e-24 116.3 71 76.1
MSTRG.12360 Avicennia marina HOM05D004126 ORTHO05D004818 3.6e-24 115.9 85 70.6
BcaNung06968 Brassica carinata HOM05D004126 ORTHO05D004818 3.6e-24 115.9 66 83.3
A08p15270 Brassica napus HOM05D004126 ORTHO05D004818 3.6e-24 115.9 66 83.3
C03p83510 Brassica napus HOM05D004126 ORTHO05D004818 3.6e-24 115.9 66 83.3
C07p51070 Brassica napus HOM05D004126 ORTHO05D004818 3.6e-24 115.9 66 83.3
BolC7t45607H Brassica oleracea HOM05D004126 ORTHO05D004818 3.6e-24 115.9 66 83.3
BraA03t14337Z Brassica rapa HOM05D004126 ORTHO05D004818 3.6e-24 115.9 66 83.3
BraA08t33505Z Brassica rapa HOM05D004126 ORTHO05D004818 3.6e-24 115.9 66 83.3
Carub.0007s2032 Capsella rubella HOM05D004126 ORTHO05D004818 3.6e-24 115.9 66 83.3
Rhsim10G0039800 Rhododendron simsii HOM05D004126 ORTHO05D004818 3.6e-24 115.9 67 83.6
Atru.chr3.3354 Acer truncatum HOM05D004126 ORTHO05D004818 4.7e-24 115.5 67 80.6
Medtr4g101930 Medicago truncatula HOM05D004126 ORTHO05D004818 4.7e-24 115.5 71 76.1
Ca_01671_v3 Cicer arietinum L. HOM05D004126 ORTHO05D004818 6.2e-24 115.2 66 84.8
Duzib170G0121 Durio zibethinus HOM05D004126 ORTHO05D004818 6.2e-24 115.2 66 86.4
Manes.11G159200 Manihot esculenta HOM05D004126 ORTHO05D004818 6.2e-24 115.2 66 83.3
A01p12450 Brassica napus HOM05D004126 ORTHO05D004818 8.1e-24 114.8 66 81.8
CSS0041849 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 8.1e-24 114.8 71 80.3
CSS0047176 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 8.1e-24 114.8 110 57.3
HanXRQChr01g0019701 Helianthus annuus HOM05D004126 ORTHO05D004818 8.1e-24 114.8 68 80.9
RcHm_v2.0_Chr5g0055141 Rosa chinensis HOM05D004126 ORTHO05D004818 8.1e-24 114.8 66 81.8
BcaC01g00715 Brassica carinata HOM05D004126 ORTHO05D004818 1.1e-23 114.4 66 80.3
TPR.G37632 Trifolium pratense HOM05D004126 ORTHO05D004818 1.1e-23 114.4 71 74.6
vmacro14365 Vaccinium macrocarpon HOM05D004126 ORTHO05D004818 1.1e-23 114.4 66 81.8
Ah.07g202810 Amaranthus hybridus HOM05D004126 ORTHO05D004818 1.4e-23 114.0 66 83.3
Manes.04G007100 Manihot esculenta HOM05D004126 ORTHO05D004818 1.8e-23 113.6 66 80.3
Medtr4g053330 Medicago truncatula HOM05D004126 ORTHO05D004818 1.8e-23 113.6 71 76.1
DCAR_012178 Daucus carota HOM05D004126 ORTHO05D004818 2.4e-23 113.2 66 80.3
Peaxi162Scf01284g00022 Petunia axillaris HOM05D004126 ORTHO05D004818 2.4e-23 113.2 66 78.8
A03p52630 Brassica napus HOM05D004126 ORTHO05D004818 3.1e-23 112.8 66 81.8
Lalb_Chr03g0027971 Lupinus albus HOM05D004126 ORTHO05D004818 3.1e-23 112.8 66 77.3
Cc01_g09610 Coffea canephora HOM05D004126 ORTHO05D004818 4.0e-23 112.5 66 80.3
Lsat_1_v5_gn_1_62101 Lactuca sativa HOM05D004126 ORTHO05D004818 4.0e-23 112.5 66 78.8
Lj3g0005404 Lotus japonicus HOM05D004126 ORTHO05D004818 4.0e-23 112.5 66 81.8
Gohir.A08G004000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 5.3e-23 112.1 66 84.8
Hma1.2p1_0695F.1_g204510 Hydrangea macrophylla HOM05D004126 ORTHO05D004818 5.3e-23 112.1 66 81.8
Nitab4.5_0003082g0050 Nicotiana tabacum HOM05D004126 ORTHO05D004818 5.3e-23 112.1 66 78.8
Hund13926 Selenicereus undatus HOM05D004126 ORTHO05D004818 5.3e-23 112.1 71 74.6
PGSC0003DMG400007147 Solanum tuberosum HOM05D004126 ORTHO05D004818 5.3e-23 112.1 66 77.3
ECA233G1451 Erigeron canadensis HOM05D004126 ORTHO05D004818 6.9e-23 111.7 66 77.3
Lj3g0019761 Lotus japonicus HOM05D004126 ORTHO05D004818 9.0e-23 111.3 66 81.8
Sopen06g030950 Solanum pennellii HOM05D004126 ORTHO05D004818 9.0e-23 111.3 66 77.3
unitig_8.g3289 Utricularia gibba HOM05D004126 ORTHO05D004818 9.0e-23 111.3 66 80.3
CAN.G919.11 Capsicum annuum HOM05D004126 ORTHO05D004818 1.2e-22 110.9 66 75.8
Nitab4.5_0009196g0030 Nicotiana tabacum HOM05D004126 ORTHO05D004818 1.2e-22 110.9 66 77.3
Gohir.A08G004100 Gossypium hirsutum HOM05D004126 ORTHO05D004818 1.5e-22 110.5 66 83.3
Psat4g069800 Pisum sativum HOM05D004126 ORTHO05D004818 1.5e-22 110.5 71 73.2
Migut.N02508 Erythranthe guttata HOM05D004126 ORTHO05D004818 2.0e-22 110.2 66 78.8
Lalb_Chr19g0136701 Lupinus albus HOM05D004126 ORTHO05D004818 2.0e-22 110.2 66 75.8
Medtr2g085045 Medicago truncatula HOM05D004126 ORTHO05D004818 2.0e-22 110.2 67 80.6
CAN.G644.16 Capsicum annuum HOM05D004126 ORTHO05D004818 2.6e-22 109.8 66 75.8
Psat5g255840 Pisum sativum HOM05D004126 ORTHO05D004818 2.6e-22 109.8 67 79.1
Sopen03g017380 Solanum pennellii HOM05D004126 ORTHO05D004818 2.6e-22 109.8 64 76.6
TWI12G1250 Tripterygium wilfordii HOM05D004126 ORTHO05D004818 2.6e-22 109.8 66 78.8
unitig_22.g6645 Utricularia gibba HOM05D004126 ORTHO05D004818 2.6e-22 109.8 66 77.3
MBI14_g32122_MAGBIO Magnolia biondii HOM05D004126 ORTHO05D010914 3.4e-22 109.4 127 48.8
Sc10g0010310 Simmondsia chinensis HOM05D004126 ORTHO05D004818 3.4e-22 109.4 66 77.3
Nn2g13476 Nelumbo nucifera HOM05D004126 ORTHO05D004818 5.8e-22 108.6 74 68.9
Nitab4.5_0004070g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 5.8e-22 108.6 66 74.2
GSVIVG01031376001 Vitis vinifera HOM05D004126 ORTHO05D004818 5.8e-22 108.6 66 77.3
Eucgr.B03883 Eucalyptus grandis HOM05D004126 ORTHO05D004818 7.6e-22 108.2 65 75.4
Gohir.A05G083000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 7.6e-22 108.2 66 80.3
Gohir.D05G086000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 7.6e-22 108.2 66 80.3
Gorai.009G087600 Gossypium raimondii HOM05D004126 ORTHO05D004818 7.6e-22 108.2 66 80.3
TPR.G23418 Trifolium pratense HOM05D004126 ORTHO05D004818 7.6e-22 108.2 67 79.1
HPP92_018131 Vanilla planifolia HOM05D004126 ORTHO05D004818 1.3e-21 107.5 66 78.8
MELO3C021444.2 Cucumis melo HOM05D004126 ORTHO05D004818 1.7e-21 107.1 55 98.2
arahy.Tifrunner.gnm1.ann1.A24RK9 Arachis hypogaea HOM05D004126 ORTHO05D004818 2.9e-21 106.3 64 73.4
Zm00001eb351210 Zea mays HOM05D004126 ORTHO05D004818 6.4e-21 105.1 66 74.2
PGR102G0539 Punica granatum HOM05D004126 ORTHO05D004818 1.4e-20 104.0 66 74.2
ATR1136G081 Amborella trichopoda HOM05D004126 ORTHO05D004818 1.9e-20 103.6 71 67.6
Thhalv10026571m.g Eutrema salsugineum HOM05D004126 ORTHO05D004818 1.9e-20 103.6 86 66.3
Lsat_1_v5_gn_6_39460 Lactuca sativa HOM05D004126 ORTHO05D004818 2.4e-20 103.2 64 76.6
Nn2g11232 Nelumbo nucifera HOM05D004126 ORTHO05D004818 2.4e-20 103.2 66 74.2
Gohir.A03G116500 Gossypium hirsutum HOM05D004126 ORTHO05D004818 5.4e-20 102.1 66 80.3
PGSC0003DMG400026528 Solanum tuberosum HOM05D004126 ORTHO05D004818 5.4e-20 102.1 66 69.7
Os02g0162000 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 9.3e-20 101.3 66 71.2
Sopen11g026730 Solanum pennellii HOM05D004126 ORTHO05D004818 1.2e-19 100.9 66 69.7
Os07g0647500 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 2.7e-19 99.8 71 69.0
Zm00001eb329410 Zea mays HOM05D004126 ORTHO05D004818 2.7e-19 99.8 71 67.6
Zm00001eb110520 Zea mays HOM05D004126 ORTHO05D004818 1.0e-18 97.8 71 69.0
TAR636G2319 Trochodendron aralioides HOM05D004126 ORTHO05D004818 1.3e-18 97.4 71 70.4
HanXRQChr14g0451651 Helianthus annuus HOM05D004126 ORTHO05D004818 3.9e-18 95.9 51 88.2
PSO384G3267 Papaver somniferum HOM05D004126 ORTHO05D004818 3.9e-18 95.9 71 69.0
Nn2g13477 Nelumbo nucifera HOM05D004126 ORTHO05D004818 8.7e-18 94.7 60 73.3
MD03G1137200 Malus domestica HOM05D004126 ORTHO05D004818 1.9e-17 93.6 50 86.0
Aa31LG6G3140 Aethionema arabicum HOM05D003300 ORTHO05D003731 1.3e-16 90.9 50 86.0
SGA_v2.0_scaffold83G26418 Striga asiatica HOM05D004126 ORTHO05D004818 1.3e-16 90.9 60 75.0
Haze_23434 Corylus avellana HOM05D004126 ORTHO05D004818 2.8e-16 89.7 55 78.2
Duzib150G0214 Durio zibethinus HOM05D004126 ORTHO05D004818 6.2e-16 88.6 50 88.0
CDE04G1551 Ceratophyllum demersum HOM05D004126 ORTHO05D004818 1.2e-14 84.3 80 56.2
Aqoxy4G01986 Aquilegia oxysepala HOM05D004126 ORTHO05D004818 2.9e-13 79.7 55 67.3
C08p30760 Brassica napus HOM05D004126 ORTHO05D004818 2.9e-13 79.7 50 78.0
CDE02G2464 Ceratophyllum demersum HOM05D004126 ORTHO05D004818 4.9e-13 79.0 81 51.9
Nitab4.5_0006735g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 6.4e-13 78.6 51 72.5
DCAR_010375 Daucus carota HOM05D004126 ORTHO05D004818 1.1e-12 77.8 51 74.5
Os05g0457000 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 1.1e-12 77.8 59 66.1
SEGI_11030 Sequoiadendron giganteum HOM05D004126 ORTHO05D004818 1.1e-12 77.8 58 67.2
BcaC07g41056 Brassica carinata HOM05D004126 ORTHO05D004818 3.2e-12 76.3 48 75.0
Aqoxy3G03824 Aquilegia oxysepala HOM05D004126 ORTHO05D004818 2.1e-11 73.6 55 70.9
AagrBONN_evm.TU.Sc2ySwM_228.2832 Anthoceros agrestis HOM05D004126 ORTHO05D004818 3.0e-10 69.7 59 50.8
C06p07750 Brassica napus HOM05D001074 ORTHO05D001188 5.6e-09 65.5 68 57.4
Mapoly0085s0067 Marchantia polymorpha HOM05D004126 ORTHO05D004818 5.6e-09 65.5 56 51.8
C06p15650 Brassica napus HOM05D001074 ORTHO05D001188 1.6e-08 63.9 68 55.9
BolC2t07590H Brassica oleracea HOM05D001074 ORTHO05D001188 1.6e-08 63.9 61 60.7
C02p14630 Brassica napus HOM05D001074 ORTHO05D001188 2.8e-08 63.2 39 74.4
PSO384G1920 Papaver somniferum HOM05D004126 ORTHO05D004818 4.8e-08 62.4 58 55.2
BcaB02g06868 Brassica carinata HOM05D004126 ORTHO05D004818 8.1e-08 61.6 33 81.8
C09p36720 Brassica napus HOM05D001074 ORTHO05D001188 1.8e-07 60.5 61 57.4
BolC9t56503H Brassica oleracea HOM05D001074 ORTHO05D001188 1.8e-07 60.5 61 57.4
BcaC04g21006 Brassica carinata HOM05D001074 ORTHO05D001188 1.5e-06 57.4 36 72.2


User provided reference genes

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