Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 6.2e-106 387.5 198 100.0
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 6.4e-103 377.5 198 96.5
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 2.3e-92 342.4 198 87.9
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 7.1e-78 294.3 198 73.2
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 1.6e-77 293.1 198 74.7
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 1.0e-76 290.4 197 74.1
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 3.9e-76 288.5 197 73.6
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 4.3e-75 285.0 198 72.7
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 4.3e-75 285.0 198 73.7
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 5.6e-75 284.6 196 71.9
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 7.3e-75 284.3 198 71.7
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 1.3e-74 283.5 206 71.4
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 1.6e-74 283.1 198 71.7
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 2.8e-74 282.3 197 71.6
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 2.8e-74 282.3 198 73.7
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 3.6e-74 282.0 198 72.2
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 4.8e-74 281.6 198 71.2
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 4.8e-74 281.6 198 71.2
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 4.8e-74 281.6 198 73.2
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 6.2e-74 281.2 198 70.2
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 3.1e-73 278.9 197 71.6
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 4.0e-73 278.5 197 69.0
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 2.0e-72 276.2 195 69.7
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 3.4e-72 275.4 198 69.7
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 4.5e-72 275.0 198 67.2
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 4.5e-72 275.0 198 67.2
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 5.8e-72 274.6 198 69.7
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 5.8e-72 274.6 198 69.7
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 9.9e-72 273.9 198 70.2
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 1.7e-71 273.1 198 70.7
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 2.2e-71 272.7 197 70.1
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.2e-71 272.7 198 66.7
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 3.8e-71 271.9 198 69.2
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.9e-71 271.6 198 70.2
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 4.9e-71 271.6 198 69.2
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.4e-71 270.8 198 70.2
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 3.2e-70 268.9 198 69.7
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 5.5e-70 268.1 198 65.7
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 5.5e-70 268.1 199 68.8
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 9.3e-70 267.3 200 66.5
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 9.3e-70 267.3 198 70.2
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 2.1e-69 266.2 198 66.2
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 2.1e-69 266.2 198 68.7
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 2.1e-69 266.2 201 65.7
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 2.1e-69 266.2 194 72.2
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 2.1e-69 266.2 197 68.0
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 2.1e-69 266.2 197 68.0
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 2.7e-69 265.8 198 68.2
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 4.6e-69 265.0 197 66.5
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 6.0e-69 264.6 197 67.0
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 7.9e-69 264.2 198 65.7
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 1.0e-68 263.8 196 66.3
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 2.3e-68 262.7 196 63.8
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 3.0e-68 262.3 197 67.0
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 3.9e-68 261.9 186 70.4
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 8.7e-68 260.8 195 69.2
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 1.5e-67 260.0 198 66.2
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 1.5e-67 260.0 216 63.0
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 4.3e-67 258.5 198 64.6
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 5.6e-67 258.1 198 64.6
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 9.6e-67 257.3 199 64.8
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 1.3e-66 256.9 189 69.8
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 1.6e-66 256.5 198 67.2
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 6.2e-66 254.6 195 61.5
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 1.4e-65 253.4 206 62.1
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 1.8e-65 253.1 195 64.6
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 3.1e-65 252.3 197 62.9
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 3.1e-65 252.3 198 64.1
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 2.6e-64 249.2 198 65.2
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 5.8e-64 248.1 198 62.6
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 3.8e-63 245.4 198 60.6
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 1.9e-62 243.0 198 60.1
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 1.2e-61 240.4 198 61.6
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 1.6e-61 240.0 198 61.1
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 1.6e-61 240.0 198 60.6
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 2.7e-61 239.2 198 61.1
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 2.7e-61 239.2 198 61.1
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 2.7e-61 239.2 198 61.1
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 6.0e-61 238.0 198 60.6
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 6.0e-61 238.0 198 61.6
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 1.3e-60 236.9 198 61.6
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 2.3e-60 236.1 198 60.6
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 2.3e-60 236.1 198 61.6
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 2.3e-60 236.1 198 61.6
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 1.1e-59 233.8 198 60.1
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 2.5e-59 232.6 198 58.1
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 7.4e-59 231.1 224 54.5
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.6e-59 230.7 179 67.0
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 1.3e-58 230.3 198 60.6
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 3.7e-58 228.8 212 55.7
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.1e-57 227.3 178 66.3
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 1.3e-55 220.3 193 58.5
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 5.0e-55 218.4 211 51.7
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 5.0e-55 218.4 160 70.0
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 8.4e-55 217.6 186 60.2
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 7.4e-51 204.5 195 56.9
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 9.7e-51 204.1 198 51.0
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 1.6e-50 203.4 160 63.8
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 2.2e-50 203.0 218 50.5
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 4.8e-50 201.8 179 58.1
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 5.3e-49 198.4 124 79.8
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 1.2e-48 197.2 147 66.7
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 6.1e-45 184.9 122 73.8
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.3e-42 177.2 177 59.3
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.8e-39 165.6 159 59.1
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 4.5e-32 142.1 127 59.8
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 6.5e-31 138.3 118 61.0
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 3.2e-30 136.0 196 39.3
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 1.3e-26 124.0 103 61.2
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.7e-24 116.3 74 78.4
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 8.5e-23 111.3 110 53.6
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.5e-23 111.3 102 58.8
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.1e-21 105.1 204 40.2
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 4.0e-20 102.4 74 66.2
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.8e-20 101.3 125 50.4
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.8e-19 97.8 95 57.9
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 1.4e-17 94.0 78 64.1
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.8e-17 93.6 80 62.5
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 2.7e-16 89.7 75 57.3
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 4.5e-16 89.0 75 54.7
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.2e-15 86.7 110 50.0
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 2.2e-15 86.7 91 51.6
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 6.5e-15 85.1 82 48.8
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.5e-15 84.7 81 60.5
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.7e-13 79.7 100 49.0
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 1.3e-10 70.9 66 51.5
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 1.1e-09 67.8 52 71.2
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 2.7e-08 63.2 86 44.2
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 2.9e-07 59.7 45 57.8
Zm00001eb350410 Zea mays HOM05D005360 ORTHO05D006501 5.6e-06 55.5 49 46.9
Zm00001eb410990 Zea mays HOM05D005360 ORTHO05D006501 5.6e-06 55.5 49 46.9


User provided reference genes

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