Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G013780 Cucumis sativus L. HOM05D005394 ORTHO05D006909 0.0e+00 1538.9 847 100.0
MELO3C019674.2 Cucumis melo HOM05D005394 ORTHO05D006909 0.0e+00 1459.9 846 95.6
ClCG02G018460 Citrullus lanatus HOM05D005394 ORTHO05D006909 0.0e+00 1450.3 857 92.5
Sed0013102 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1362.1 849 89.2
Sed0020842 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1356.7 825 89.1
arahy.Tifrunner.gnm1.ann1.3I6JR3 Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1233.4 846 79.6
Ciclev10030699m.g Citrus clementina HOM05D005394 ORTHO05D006909 0.0e+00 1230.3 840 77.6
arahy.Tifrunner.gnm1.ann1.C2BK4Q Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1224.5 859 78.3
FAN14G2062 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1224.2 828 78.6
FvH4_6g38530 Fragaria vesca HOM05D005394 ORTHO05D006909 0.0e+00 1222.6 828 78.5
RcHm_v2.0_Chr2g0151781 Rosa chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1220.3 828 78.5
Prupe.3G175300 Prunus persica HOM05D005394 ORTHO05D006909 0.0e+00 1218.8 841 76.9
FAN05G5751 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1216.4 828 78.1
FAN02G2503 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1214.9 828 78.1
FAN09G4660 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1213.0 828 77.9
Ca_06271_v3 Cicer arietinum L. HOM05D005394 ORTHO05D006909 0.0e+00 1207.2 846 75.5
MD09G1149900 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1201.0 830 77.0
Manes.01G130300 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1199.1 843 78.5
Lalb_Chr17g0348211 Lupinus albus HOM05D005394 ORTHO05D006909 0.0e+00 1198.7 818 78.4
Manes.02G088100 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1197.2 841 78.1
Psat0s1569g0040 Pisum sativum HOM05D005394 ORTHO05D006909 0.0e+00 1196.8 846 74.5
Medtr5g091250 Medicago truncatula HOM05D005394 ORTHO05D006909 0.0e+00 1195.6 840 74.8
Atru.BG.36.p Acer truncatum HOM05D005394 ORTHO05D006909 0.0e+00 1192.9 790 79.4
Sabra05G0154700 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1192.9 850 75.4
Thecc.04G175300 Theobroma cacao HOM05D005394 ORTHO05D006909 0.0e+00 1186.4 838 77.2
GSVIVG01020852001 Vitis vinifera HOM05D005394 ORTHO05D006909 0.0e+00 1186.4 820 76.7
COL.COLO4_10088 Corchorus olitorius HOM05D005394 ORTHO05D006909 0.0e+00 1180.6 832 77.9
Cfa023066 Carpinus fangiana HOM05D005394 ORTHO05D006909 0.0e+00 1176.4 833 76.4
Gohir.A10G140600 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1175.6 841 76.6
Gorai.011G139100 Gossypium raimondii HOM05D005394 ORTHO05D006909 0.0e+00 1172.9 841 76.7
MD17G1137000 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1172.9 763 80.5
Potri.005G203900 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1172.9 849 74.4
PGR042G0197 Punica granatum HOM05D005394 ORTHO05D006909 0.0e+00 1170.6 833 77.7
Dinv07076 Davidia involucrata HOM05D005394 ORTHO05D006909 0.0e+00 1168.7 809 78.2
TWI14G0801 Tripterygium wilfordii HOM05D005394 ORTHO05D006909 0.0e+00 1167.9 833 74.9
Glyma.14G029500 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1164.1 842 75.5
VMungo0647G2040 Vigna mungo HOM05D005394 ORTHO05D006909 0.0e+00 1163.7 837 75.5
Gohir.D10G126100 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1163.3 841 76.3
CANSAT64G3008 Cannabis sativa HOM05D005394 ORTHO05D006909 0.0e+00 1162.9 828 76.1
TAR626G0164 Trochodendron aralioides HOM05D005394 ORTHO05D006909 0.0e+00 1161.4 832 73.1
THA.LOC104825567 Tarenaya hassleriana HOM05D005394 ORTHO05D006909 0.0e+00 1160.2 792 78.5
Phvul.008G193314 Phaseolus vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1156.4 841 75.1
Haze_13523 Corylus avellana HOM05D005394 ORTHO05D006909 0.0e+00 1149.4 942 68.3
Sopen10g003630 Solanum pennellii HOM05D005394 ORTHO05D006909 0.0e+00 1149.4 845 72.8
LjContig00049g0014840 Lotus japonicus HOM05D005394 ORTHO05D006909 0.0e+00 1148.3 846 74.8
Solyc10g007720.4 Solanum lycopersicum HOM05D005394 ORTHO05D006909 0.0e+00 1147.5 845 72.3
Nn8g41245 Nelumbo nucifera HOM05D005394 ORTHO05D006909 0.0e+00 1146.0 838 73.6
PGSC0003DMG400021243 Solanum tuberosum HOM05D005394 ORTHO05D006909 0.0e+00 1144.0 845 72.5
QL08p044839 Quercus lobata HOM05D005394 ORTHO05D006909 0.0e+00 1142.9 868 73.7
Aqoxy1G01759 Aquilegia oxysepala HOM05D005394 ORTHO05D006909 0.0e+00 1135.9 841 71.2
Aa31sc829G10 Aethionema arabicum HOM05D005394 ORTHO05D006909 0.0e+00 1135.2 791 76.0
CiPaw.03G191600 Carya illinoinensis HOM05D005394 ORTHO05D006909 0.0e+00 1134.8 833 76.4
CSS0015023 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1133.2 758 79.0
Potri.002G058300 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1130.5 845 74.1
CSS0042292 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1129.0 759 78.5
A07p34470 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1123.6 820 73.3
Sp5g22930 Schrenkiella parvula HOM05D005394 ORTHO05D006909 0.0e+00 1122.8 829 73.1
Glyma.02G286300 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1122.5 843 73.5
Nitab4.5_0003104g0050 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1122.1 840 72.5
BcaC08g46216 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1119.0 826 73.4
C06p42040 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1118.6 823 72.9
Peaxi162Scf00035g02520 Petunia axillaris HOM05D005394 ORTHO05D006909 0.0e+00 1118.2 827 72.3
AL2G26730 Arabidopsis lyrata HOM05D005394 ORTHO05D006909 0.0e+00 1117.4 827 72.7
BolC6t39222H Brassica oleracea HOM05D005394 ORTHO05D006909 0.0e+00 1115.1 820 73.0
Nitab4.5_0002209g0020 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1114.0 840 73.8
Cc05_g09680 Coffea canephora HOM05D005394 ORTHO05D006909 0.0e+00 1113.6 839 72.3
PSO541G2917 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1112.1 860 70.3
PSO675G3098 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1111.3 860 70.5
BolC6t38908H Brassica oleracea HOM05D005394 ORTHO05D006909 0.0e+00 1109.0 814 73.0
CARHR060570 Cardamine hirsuta HOM05D005394 ORTHO05D006909 0.0e+00 1108.6 831 71.7
MBI16_g26174_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 0.0e+00 1107.8 835 69.9
AT1G67930 Arabidopsis thaliana HOM05D005394 ORTHO05D006909 0.0e+00 1107.4 830 71.8
Sc06g0007690 Simmondsia chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1105.1 826 68.9
C06p38110 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1104.4 814 72.7
Duzib212G0967 Durio zibethinus HOM05D005394 ORTHO05D006909 0.0e+00 1104.0 837 72.4
BcaC08g46016 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1103.2 814 72.6
EL10Ac9g22847 Beta vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1101.3 830 70.1
MSTRG.15035 Avicennia marina HOM05D005394 ORTHO05D006909 0.0e+00 1098.6 838 71.5
Carub.0002s1442 Capsella rubella HOM05D005394 ORTHO05D006909 0.0e+00 1097.0 828 71.1
HanXRQChr16g0503181 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1096.6 828 70.5
DCAR_009812 Daucus carota HOM05D005394 ORTHO05D006909 0.0e+00 1086.2 829 70.2
HanXRQChr17g0559821 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1084.7 833 69.7
HanXRQChr09g0276121 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1083.6 827 70.1
BcaB03g15386 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1081.6 759 74.3
Lsat_1_v5_gn_8_142320 Lactuca sativa HOM05D005394 ORTHO05D006909 0.0e+00 1077.4 838 70.3
Oeu020932.1 Olea europaea HOM05D005394 ORTHO05D006909 2.3e-311 1072.0 891 67.5
unitig_46.g18287 Utricularia gibba HOM05D005394 ORTHO05D006909 5.7e-310 1067.4 831 69.7
Sabra02G0047500 Salix brachista HOM05D005394 ORTHO05D006909 7.5e-310 1067.0 845 68.8
Ah.01g001930 Amaranthus hybridus HOM05D005394 ORTHO05D006909 2.0e-307 1058.9 829 68.6
BraA07t31074Z Brassica rapa HOM05D005394 ORTHO05D006909 3.8e-306 1054.7 735 74.3
CDE02G3161 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 6.8e-303 1043.9 821 67.6
Eucgr.A02013 Eucalyptus grandis HOM05D005394 ORTHO05D006909 9.8e-302 1040.0 671 78.7
SGA_v2.0_scaffold4G02121 Striga asiatica HOM05D005394 ORTHO05D006909 1.7e-301 1039.3 903 64.3
Migut.E01770 Erythranthe guttata HOM05D005394 ORTHO05D006909 8.9e-295 1016.9 836 66.7
BcaB03g15148 Brassica carinata HOM05D005394 ORTHO05D006909 2.0e-294 1015.8 670 75.7
SHI02103 Sapria himalayana HOM05D005394 ORTHO05D006909 1.5e-289 999.6 836 65.6
AUR62015139 Chenopodium quinoa HOM05D005394 ORTHO05D006909 8.0e-288 993.8 647 78.1
AUR62017599 Chenopodium quinoa HOM05D005394 ORTHO05D006909 2.6e-286 988.8 647 77.6
HPP92_002195 Vanilla planifolia HOM05D005394 ORTHO05D006909 2.0e-283 979.2 824 62.7
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 3.0e-282 975.3 789 69.2
SEGI_12117 Sequoiadendron giganteum HOM05D005394 ORTHO05D006909 5.6e-281 971.1 824 62.6
vmacro00998 Vaccinium macrocarpon HOM05D005394 ORTHO05D006909 3.6e-280 968.4 919 61.7
Thhalv10018283m.g Eutrema salsugineum HOM05D005394 ORTHO05D006909 2.3e-279 965.7 625 77.1
ATR0605G001 Amborella trichopoda HOM05D005394 ORTHO05D006909 8.9e-279 963.8 820 65.4
Lj1A601G23 Lonicera japonica HOM05D005394 ORTHO05D006909 4.7e-272 941.4 636 76.3
Zm00001eb286850 Zea mays HOM05D005394 ORTHO05D006909 8.7e-266 920.6 828 63.6
Mapoly0082s0010 Marchantia polymorpha HOM05D005394 ORTHO05D006909 2.8e-264 915.6 844 58.3
CAN.G2018.3 Capsicum annuum HOM05D005394 ORTHO05D006909 6.0e-259 897.9 570 78.4
Pp3c14_13420 Physcomitrium patens HOM05D005394 ORTHO05D006909 7.9e-251 870.9 820 55.6
Pp3c10_16550 Physcomitrium patens HOM05D005394 ORTHO05D006909 3.0e-250 869.0 835 55.7
SMO266G0070 Selaginella moellendorffii HOM05D005394 ORTHO05D006909 9.6e-241 837.4 790 55.2
Rhsim12G0008000 Rhododendron simsii HOM05D005394 ORTHO05D006909 3.6e-227 792.3 834 57.1
CBR_g53704 Chara braunii HOM05D005394 ORTHO05D006909 6.1e-227 791.6 797 52.8
Actinidia25071 Actinidia chinensis HOM05D005394 ORTHO05D006909 3.7e-224 782.3 846 56.3
Cpa.g.sc2.203 Carica papaya HOM05D005394 ORTHO05D006909 1.7e-200 703.7 430 83.5
Oeu033979.1 Olea europaea HOM05D005394 ORTHO05D006909 8.3e-168 595.1 480 67.5
Actinidia12539 Actinidia chinensis HOM05D005394 ORTHO05D006909 1.6e-155 554.3 442 68.3
Atru.chr6.2063 Acer truncatum HOM05D005394 ORTHO05D006909 4.2e-143 513.1 322 82.0
Cre17.g721900 Chlamydomonas reinhardtii HOM05D005394 ORTHO05D006909 2.3e-125 454.1 786 36.5
CDE09G0652 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 5.7e-124 449.5 307 72.6
PRCOL_00001583 Prasinoderma coloniale HOM05D005394 ORTHO05D006909 2.8e-123 447.2 788 35.4
Cpa.g.sc2.200 Carica papaya HOM05D005394 ORTHO05D006909 1.7e-120 438.0 377 73.2
MBI10_g36389_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 5.1e-117 426.4 265 79.6
MBI10_g36386_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 3.2e-111 407.1 400 56.8
MCO08G047 Micromonas commoda HOM05D005394 ORTHO05D006909 7.2e-95 352.8 872 31.3
Actinidia12538 Actinidia chinensis HOM05D005394 ORTHO05D006909 8.3e-83 312.8 279 63.1
CSS0027861 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.5e-76 292.0 386 51.3
Haze_13526 Corylus avellana HOM05D005394 ORTHO05D006909 4.0e-61 240.7 227 61.2
BcaB01g03482 Brassica carinata HOM05D005394 ORTHO05D006909 1.9e-50 205.3 131 76.3
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 1.2e-49 202.6 140 72.1
HanXRQChr14g0428721 Helianthus annuus HOM05D005394 ORTHO05D006909 7.6e-44 183.3 125 72.0
CSS0006481 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.1e-42 179.5 142 72.5
unitig_748.g8066 Utricularia gibba HOM05D005394 ORTHO05D006909 8.4e-35 153.3 121 71.1
CSS0003150 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.2e-33 149.4 151 54.3
CSS0047075 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.6e-33 149.1 151 54.3
CSS0027532 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 3.0e-32 144.8 158 54.4
BcaB01g03481 Brassica carinata HOM05D005394 ORTHO05D006909 9.3e-18 96.7 70 70.0
Actinidia12535 Actinidia chinensis HOM05D005394 ORTHO05D055987 4.9e-11 74.3 94 48.9
QL02p034830 Quercus lobata HOM05D003913 ORTHO05D004803 6.3e-06 57.4 63 50.8


User provided reference genes

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