Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G013400 Cucumis sativus L. HOM05D005454 ORTHO05D006781 1.4e-69 266.2 134 100.0
ClCG02G018790 Citrullus lanatus HOM05D005454 ORTHO05D006781 2.2e-62 242.3 134 89.6
Sed0024280 Sechium edule HOM05D005454 ORTHO05D006781 1.0e-59 233.4 136 85.3
MELO3C019617.2 Cucumis melo HOM05D005454 ORTHO05D006781 5.5e-58 227.6 151 79.5
Manes.16G045300 Manihot esculenta HOM05D005454 ORTHO05D006781 1.2e-57 226.5 134 82.8
TWI59G0830 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 1.4e-53 213.0 133 77.4
Atru.chr1.44 Acer truncatum HOM05D005454 ORTHO05D006781 2.4e-53 212.2 133 76.7
TAR626G0894 Trochodendron aralioides HOM05D005454 ORTHO05D006781 7.0e-53 210.7 127 81.1
Sabra08G0060600 Salix brachista HOM05D005454 ORTHO05D006781 2.7e-52 208.8 133 76.7
CiPaw.15G112200 Carya illinoinensis HOM05D005454 ORTHO05D006781 1.3e-51 206.5 134 74.6
Eucgr.F04477 Eucalyptus grandis HOM05D005454 ORTHO05D006781 1.7e-51 206.1 132 77.3
Ciclev10006210m.g Citrus clementina HOM05D005454 ORTHO05D006781 2.2e-51 205.7 127 77.2
TWI38G1327 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 3.8e-51 204.9 133 73.7
GSVIVG01036708001 Vitis vinifera HOM05D005454 ORTHO05D006781 5.0e-51 204.5 127 78.0
Oeu029453.1 Olea europaea HOM05D005454 ORTHO05D006781 6.5e-51 204.1 127 78.0
Potri.008G081400 Populus trichocarpa HOM05D005454 ORTHO05D006781 6.5e-51 204.1 134 75.4
Thecc.02G245200 Theobroma cacao HOM05D005454 ORTHO05D006781 8.5e-51 203.8 130 76.2
Prupe.4G126700 Prunus persica HOM05D005454 ORTHO05D006781 2.5e-50 202.2 127 78.0
CANSAT56G1199 Cannabis sativa HOM05D005454 ORTHO05D006781 3.2e-50 201.8 134 74.6
BraA07t31955Z Brassica rapa HOM05D005454 ORTHO05D006781 4.2e-50 201.4 126 75.4
CANSAT56G0738 Cannabis sativa HOM05D005454 ORTHO05D006781 4.2e-50 201.4 134 74.6
MD10G1217600 Malus domestica HOM05D005454 ORTHO05D006781 5.5e-50 201.1 127 77.2
Nn7g38402 Nelumbo nucifera HOM05D005454 ORTHO05D006781 5.5e-50 201.1 127 76.4
CAN.G710.29 Capsicum annuum HOM05D005454 ORTHO05D006781 7.2e-50 200.7 127 74.8
COL.COLO4_19518 Corchorus olitorius HOM05D005454 ORTHO05D006781 7.2e-50 200.7 127 76.4
Nitab4.5_0006630g0030 Nicotiana tabacum HOM05D005454 ORTHO05D006781 1.2e-49 199.9 127 75.6
BcaB02g07212 Brassica carinata HOM05D005454 ORTHO05D006781 1.6e-49 199.5 126 74.6
Migut.M01498 Erythranthe guttata HOM05D005454 ORTHO05D006781 1.6e-49 199.5 134 73.1
Gohir.A02G014000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.6e-49 199.5 118 81.4
BcaC08g47498 Brassica carinata HOM05D005454 ORTHO05D006781 2.1e-49 199.1 126 74.6
C06p53270 Brassica napus HOM05D005454 ORTHO05D006781 2.1e-49 199.1 126 74.6
BolC6t40345H Brassica oleracea HOM05D005454 ORTHO05D006781 2.1e-49 199.1 126 74.6
Duzib251G0225 Durio zibethinus HOM05D005454 ORTHO05D006781 3.6e-49 198.4 133 74.4
THA.LOC104812391 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 3.6e-49 198.4 127 74.8
Cc00_g09040 Coffea canephora HOM05D005454 ORTHO05D006781 4.7e-49 198.0 127 73.2
Actinidia00854 Actinidia chinensis HOM05D005454 ORTHO05D006781 6.1e-49 197.6 127 75.6
Thhalv10019255m.g Eutrema salsugineum HOM05D005454 ORTHO05D006781 6.1e-49 197.6 127 72.4
Gohir.D01G133900 Gossypium hirsutum HOM05D005454 ORTHO05D006781 6.1e-49 197.6 118 80.5
Gorai.002G165600 Gossypium raimondii HOM05D005454 ORTHO05D006781 6.1e-49 197.6 118 80.5
Lsat_1_v5_gn_5_184081 Lactuca sativa HOM05D005454 ORTHO05D006781 8.0e-49 197.2 113 81.4
Solyc09g098140.4 Solanum lycopersicum HOM05D005454 ORTHO05D006781 8.0e-49 197.2 127 73.2
Sopen09g036090 Solanum pennellii HOM05D005454 ORTHO05D006781 8.0e-49 197.2 127 73.2
SGA_v2.0_scaffold186G40175 Striga asiatica HOM05D005454 ORTHO05D006781 8.0e-49 197.2 118 78.8
Nitab4.5_0004200g0060 Nicotiana tabacum HOM05D005454 ORTHO05D006781 1.0e-48 196.8 127 74.8
THA.LOC104808143 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 1.0e-48 196.8 119 78.2
QL04p094645 Quercus lobata HOM05D005454 ORTHO05D006781 1.4e-48 196.4 133 72.9
QL04p094846 Quercus lobata HOM05D005454 ORTHO05D006781 1.4e-48 196.4 133 72.9
PGSC0003DMG400011901 Solanum tuberosum HOM05D005454 ORTHO05D006781 1.4e-48 196.4 127 72.4
vmacro09764 Vaccinium macrocarpon HOM05D005454 ORTHO05D006781 1.8e-48 196.1 127 73.2
A07p27170 Brassica napus HOM05D005454 ORTHO05D006781 2.3e-48 195.7 126 73.8
Peaxi162Scf00286g00452 Petunia axillaris HOM05D005454 ORTHO05D006781 2.3e-48 195.7 127 74.0
Duzib248G0167 Durio zibethinus HOM05D005454 ORTHO05D006781 4.0e-48 194.9 133 73.7
PGR102G3369 Punica granatum HOM05D005454 ORTHO05D006781 4.0e-48 194.9 118 77.1
Cpa.g.sc32.137 Carica papaya HOM05D005454 ORTHO05D006781 5.2e-48 194.5 120 79.2
BcaC08g45360 Brassica carinata HOM05D005454 ORTHO05D006781 6.8e-48 194.1 126 73.0
C06p29920 Brassica napus HOM05D005454 ORTHO05D006781 6.8e-48 194.1 126 73.0
BraA07t30361Z Brassica rapa HOM05D005454 ORTHO05D006781 6.8e-48 194.1 126 73.0
BolC6t38153H Brassica oleracea HOM05D005454 ORTHO05D006781 1.5e-47 193.0 126 73.0
CiPaw.15G112600 Carya illinoinensis HOM05D005454 ORTHO05D006781 2.0e-47 192.6 152 64.5
SalBow8G5040 Salvia bowleyana HOM05D005454 ORTHO05D006781 2.6e-47 192.2 119 75.6
SalBow8G4406 Salvia bowleyana HOM05D005454 ORTHO05D006781 4.4e-47 191.4 134 69.4
RcHm_v2.0_Chr5g0023201 Rosa chinensis HOM05D005454 ORTHO05D006781 5.7e-47 191.0 127 74.0
Carub.0002s2625 Capsella rubella HOM05D005454 ORTHO05D006781 7.5e-47 190.7 126 70.6
Lj3g0001328 Lotus japonicus HOM05D005454 ORTHO05D006781 7.5e-47 190.7 117 76.9
Sc18g0003140 Simmondsia chinensis HOM05D005454 ORTHO05D006781 9.8e-47 190.3 121 76.9
Ah.02g115510 Amaranthus hybridus HOM05D005454 ORTHO05D006781 1.3e-46 189.9 118 77.1
Sabra10G0134500 Salix brachista HOM05D005454 ORTHO05D006781 1.3e-46 189.9 133 71.4
Aqoxy1G01376 Aquilegia oxysepala HOM05D005454 ORTHO05D006781 1.7e-46 189.5 125 73.6
MBI13_g09219_MAGBIO Magnolia biondii HOM05D005454 ORTHO05D006781 2.2e-46 189.1 133 75.2
AT1G79390 Arabidopsis thaliana HOM05D005454 ORTHO05D006781 3.7e-46 188.3 126 69.8
FAN16G0850 Fragaria x ananassa HOM05D005454 ORTHO05D006781 3.7e-46 188.3 127 72.4
FAN21G1174 Fragaria x ananassa HOM05D005454 ORTHO05D006781 3.7e-46 188.3 127 72.4
ATR0820G041 Amborella trichopoda HOM05D005454 ORTHO05D006781 6.3e-46 187.6 120 74.2
FvH4_3g13970 Fragaria vesca HOM05D005454 ORTHO05D006781 6.3e-46 187.6 127 72.4
FAN11G3450 Fragaria x ananassa HOM05D005454 ORTHO05D006781 6.3e-46 187.6 127 72.4
Hund10936 Selenicereus undatus HOM05D005454 ORTHO05D006781 6.3e-46 187.6 125 72.8
Aa31LG4G1640 Aethionema arabicum HOM05D005454 ORTHO05D006781 1.1e-45 186.8 126 68.3
Rhsim04G0003500 Rhododendron simsii HOM05D005454 ORTHO05D006781 1.1e-45 186.8 143 65.0
Zm00001eb241290 Zea mays HOM05D005454 ORTHO05D006781 1.1e-45 186.8 122 75.4
HanXRQChr13g0408901 Helianthus annuus HOM05D005454 ORTHO05D006781 1.4e-45 186.4 120 72.5
HanXRQChr13g0408931 Helianthus annuus HOM05D005454 ORTHO05D006781 1.4e-45 186.4 120 72.5
unitig_32.g11075 Utricularia gibba HOM05D005454 ORTHO05D006781 1.8e-45 186.0 127 69.3
VMungo1215G2509 Vigna mungo HOM05D005454 ORTHO05D006781 1.8e-45 186.0 117 75.2
AL2G40000 Arabidopsis lyrata HOM05D005454 ORTHO05D006781 3.1e-45 185.3 123 69.9
Glyma.11G026500 Glycine max HOM05D005454 ORTHO05D006781 4.1e-45 184.9 117 76.1
Os02g0495900 Oryza sativa ssp. japonica HOM05D005454 ORTHO05D006781 4.1e-45 184.9 128 71.9
PSO675G7587 Papaver somniferum HOM05D005454 ORTHO05D006781 7.0e-45 184.1 136 69.1
EL10Ac5g12502 Beta vulgaris HOM05D005454 ORTHO05D006781 9.1e-45 183.7 125 72.0
CiPaw.15G112400 Carya illinoinensis HOM05D005454 ORTHO05D006781 9.1e-45 183.7 148 64.2
Medtr8g447300 Medicago truncatula HOM05D005454 ORTHO05D006781 9.1e-45 183.7 117 75.2
AUR62030518 Chenopodium quinoa HOM05D005454 ORTHO05D006781 1.6e-44 183.0 118 76.3
FAN25G3791 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.6e-44 183.0 128 69.5
AUR62030774 Chenopodium quinoa HOM05D005454 ORTHO05D006781 2.0e-44 182.6 118 75.4
Lalb_Chr03g0031911 Lupinus albus HOM05D005454 ORTHO05D006781 2.7e-44 182.2 117 71.8
Phvul.002G154100 Phaseolus vulgaris HOM05D005454 ORTHO05D006781 2.7e-44 182.2 115 74.8
MD05G1239400 Malus domestica HOM05D005454 ORTHO05D006781 3.5e-44 181.8 117 75.2
Glyma.01G216400 Glycine max HOM05D005454 ORTHO05D006781 4.5e-44 181.4 117 74.4
MSTRG.16083 Avicennia marina HOM05D005454 ORTHO05D006781 2.9e-43 178.7 120 72.5
Psat4g141200 Pisum sativum HOM05D005454 ORTHO05D006781 5.0e-43 177.9 117 74.4
Dinv42456 Davidia involucrata HOM05D005454 ORTHO05D006781 1.9e-42 176.0 117 73.5
TPR.G8202 Trifolium pratense HOM05D005454 ORTHO05D006781 1.9e-42 176.0 108 75.9
arahy.Tifrunner.gnm1.ann1.DLUG3E Arachis hypogaea HOM05D005454 ORTHO05D006781 2.5e-42 175.6 122 70.5
ECA240G0828 Erigeron canadensis HOM05D005454 ORTHO05D006781 3.3e-42 175.3 114 72.8
arahy.Tifrunner.gnm1.ann1.TLTS2V Arachis hypogaea HOM05D005454 ORTHO05D006781 5.6e-42 174.5 125 68.8
Ca_26272_v3 Cicer arietinum L. HOM05D005454 ORTHO05D006781 4.7e-41 171.4 109 72.5
SEGI_00588 Sequoiadendron giganteum HOM05D005454 ORTHO05D006781 6.8e-40 167.5 132 59.8
CDE02G1314 Ceratophyllum demersum HOM05D000236 ORTHO05D000192 6.4e-30 134.4 86 79.1
Sp5g34440 Schrenkiella parvula HOM05D005454 ORTHO05D006781 3.3e-26 122.1 83 71.1
Pp3c27_5100 Physcomitrium patens HOM05D005454 ORTHO05D006781 1.2e-25 120.2 112 51.8
A07p44460 Brassica napus HOM05D005454 ORTHO05D006781 6.2e-25 117.9 68 77.9
HPP92_015989 Vanilla planifolia HOM05D005454 ORTHO05D006781 1.4e-24 116.7 73 74.0
Gohir.A03G171875 Gossypium hirsutum HOM05D005454 ORTHO05D006781 3.1e-24 115.5 73 75.3
Mapoly0011s0156 Marchantia polymorpha HOM05D005454 ORTHO05D006781 8.9e-24 114.0 112 50.0
CSS0036802 Camellia sinensis var. sinensis HOM05D005454 ORTHO05D006781 2.0e-23 112.8 67 77.6
AagrBONN_evm.TU.Sc2ySwM_117.1988 Anthoceros agrestis HOM05D005454 ORTHO05D006781 7.5e-23 110.9 112 47.3
Haze_01788 Corylus avellana HOM05D005454 ORTHO05D006781 8.3e-22 107.5 72 65.3
Hma1.2p1_0151F.1_g066990 Hydrangea macrophylla HOM05D005454 ORTHO05D006781 1.4e-21 106.7 68 70.6
Haze_08480 Corylus avellana HOM05D005454 ORTHO05D006781 1.9e-21 106.3 68 69.1
Nn7g38396 Nelumbo nucifera HOM05D005454 ORTHO05D006781 1.9e-21 106.3 77 64.9
Cfa017755 Carpinus fangiana HOM05D005454 ORTHO05D006781 2.4e-21 105.9 68 69.1
Haze_18487 Corylus avellana HOM05D005454 ORTHO05D006781 3.2e-21 105.5 67 70.1
Cfa017757 Carpinus fangiana HOM05D005454 ORTHO05D006781 4.6e-20 101.7 66 78.8
Atru.chr1.31 Acer truncatum HOM05D005454 ORTHO05D006781 6.6e-19 97.8 87 62.1
CARHR073040 Cardamine hirsuta HOM05D005454 ORTHO05D006781 3.3e-18 95.5 58 72.4
CDE04G2596 Ceratophyllum demersum HOM05D005454 ORTHO05D006781 9.5e-18 94.0 71 66.2
QL04p094659 Quercus lobata HOM05D005454 ORTHO05D006781 1.2e-17 93.6 66 74.2
Potri.010G174700 Populus trichocarpa HOM05D005454 ORTHO05D006781 2.1e-17 92.8 66 69.7
CBR_g2846 Chara braunii HOM05D005454 ORTHO05D006781 1.8e-16 89.7 114 41.2
CARHR073050 Cardamine hirsuta HOM05D005454 ORTHO05D006781 4.0e-16 88.6 57 73.7
Actinidia03633 Actinidia chinensis HOM05D005454 ORTHO05D012925 1.5e-15 86.7 60 68.3
BolC8t48807H Brassica oleracea HOM05D005454 ORTHO05D006781 1.5e-15 86.7 59 69.5
DCAR_013713 Daucus carota HOM05D005454 ORTHO05D006781 3.4e-15 85.5 108 45.4
Gohir.A04G138000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 2.2e-14 82.8 57 75.4
Cc00_g28770 Coffea canephora HOM05D001769 ORTHO05D001695 3.2e-13 79.0 93 47.3
RcHm_v2.0_Chr5g0023191 Rosa chinensis HOM05D005454 ORTHO05D006781 3.2e-13 79.0 69 56.5
C06p00690 Brassica napus HOM05D005454 ORTHO05D006781 7.8e-12 74.3 53 66.0
BolC6t35206H Brassica oleracea HOM05D005454 ORTHO05D006781 7.8e-12 74.3 53 66.0
C03p71170 Brassica napus HOM05D005454 ORTHO05D006781 3.0e-11 72.4 53 64.2
SMO367G0923 Selaginella moellendorffii HOM05D005454 ORTHO05D006781 3.0e-11 72.4 101 38.6
BcaC08g42854 Brassica carinata HOM05D005454 ORTHO05D006781 1.9e-10 69.7 46 69.6
SGA_v2.0_scaffold29G12256 Striga asiatica HOM05D005454 ORTHO05D006781 5.2e-08 61.6 45 62.2


User provided reference genes

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