Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 0.0e+00 1097.0 534 100.0
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 7.3e-312 1073.2 532 97.6
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 2.5e-287 991.5 535 90.1
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 4.7e-241 837.8 513 76.8
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 2.2e-238 828.9 520 74.2
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 2.0e-236 822.4 526 74.1
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 1.0e-235 820.1 513 75.8
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 6.5e-235 817.4 516 74.2
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 5.5e-234 814.3 519 72.8
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 3.6e-233 811.6 518 75.1
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 3.6e-233 811.6 519 72.8
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 4.7e-233 811.2 518 75.1
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 4.4e-231 804.7 538 71.2
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 7.4e-231 803.9 521 72.2
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 1.3e-230 803.1 521 74.5
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 2.2e-230 802.4 521 72.2
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 6.3e-230 800.8 533 70.7
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 2.4e-229 798.9 521 73.9
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 3.1e-229 798.5 525 71.4
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 7.0e-229 797.3 522 71.5
CANSAT56G2810 Cannabis sativa HOM05D004979 ORTHO05D006190 2.0e-228 795.8 515 71.8
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 2.6e-228 795.4 525 71.2
Thecc.05G331000 Theobroma cacao HOM05D004979 ORTHO05D006190 2.2e-227 792.3 514 72.0
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 8.5e-227 790.4 525 70.5
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 1.1e-226 790.0 518 72.0
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 2.5e-226 788.9 522 71.1
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 5.5e-226 787.7 522 71.1
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 5.5e-226 787.7 530 68.1
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 9.4e-226 786.9 530 68.1
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 1.4e-224 783.1 518 69.3
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 1.8e-224 782.7 529 68.8
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 6.7e-224 780.8 521 72.4
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 2.0e-223 779.2 514 72.0
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 2.6e-223 778.9 518 69.7
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 4.8e-222 774.6 525 67.8
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 3.1e-221 771.9 519 69.7
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 5.3e-221 771.2 514 71.0
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 1.2e-220 770.0 515 70.7
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 2.0e-220 769.2 520 68.3
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 1.7e-219 766.1 514 68.3
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 2.2e-219 765.8 522 66.9
Lj5g0020513 Lotus japonicus HOM05D004979 ORTHO05D006190 3.8e-219 765.0 525 67.2
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 5.0e-219 764.6 522 67.2
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 5.5e-218 761.1 518 67.8
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 9.4e-218 760.4 518 67.8
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 9.4e-218 760.4 521 70.6
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 2.1e-217 759.2 516 67.2
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 4.7e-217 758.1 515 69.7
Aqoxy1G02435 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 8.0e-217 757.3 521 68.1
PSO170G1924 Papaver somniferum HOM05D004979 ORTHO05D006190 1.8e-216 756.1 515 69.1
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 3.0e-216 755.4 530 65.7
THA.LOC104816839 Tarenaya hassleriana HOM05D004979 ORTHO05D006190 3.0e-216 755.4 528 67.2
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 4.0e-216 755.0 522 66.9
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 5.2e-216 754.6 515 69.3
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 3.7e-214 748.4 517 66.7
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 1.1e-213 746.9 517 67.3
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 2.4e-213 745.7 517 66.9
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 5.4e-213 744.6 517 66.9
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 7.0e-213 744.2 528 65.0
Sp2g05910 Schrenkiella parvula HOM05D004979 ORTHO05D006190 1.6e-212 743.0 517 66.9
SpUn0028_0030 Schrenkiella parvula HOM05D004979 ORTHO05D006190 1.6e-212 743.0 517 66.9
Gohir.A13G003700 Gossypium hirsutum HOM05D004979 ORTHO05D006190 2.7e-212 742.3 514 68.3
Gohir.D13G003600 Gossypium hirsutum HOM05D004979 ORTHO05D006190 4.5e-212 741.5 514 68.1
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 5.9e-212 741.1 489 70.1
Gorai.013G003500 Gossypium raimondii HOM05D004979 ORTHO05D006190 2.9e-211 738.8 515 68.2
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 7.2e-210 734.2 528 64.6
C09p23650 Brassica napus HOM05D004979 ORTHO05D006190 6.1e-209 731.1 541 64.0
A09p18870 Brassica napus HOM05D004979 ORTHO05D006190 1.0e-208 730.3 542 63.8
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 4.0e-208 728.4 588 59.5
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 6.3e-206 721.1 562 63.5
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 1.8e-205 719.5 501 66.5
Duzib114G0072 Durio zibethinus HOM05D004979 ORTHO05D006190 7.0e-205 717.6 510 67.6
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 1.2e-204 716.8 471 69.9
HanXRQChr11g0327151 Helianthus annuus HOM05D004979 ORTHO05D006190 2.7e-204 715.7 518 66.0
Os05g0144000 Oryza sativa ssp. japonica HOM05D004979 ORTHO05D006190 1.6e-201 706.4 520 64.8
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 4.7e-201 704.9 521 66.4
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 1.2e-199 700.3 520 63.8
Zm00001eb108680 Zea mays HOM05D004979 ORTHO05D006190 1.7e-198 696.4 519 64.2
Haze_12430 Corylus avellana HOM05D004979 ORTHO05D006190 7.8e-196 687.6 599 60.3
TAR636G2920 Trochodendron aralioides HOM05D004979 ORTHO05D006190 7.8e-196 687.6 441 73.9
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 1.7e-195 686.4 520 63.7
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 2.8e-193 679.1 398 79.6
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 8.0e-193 677.6 518 65.3
ATR0730G180 Amborella trichopoda HOM05D004979 ORTHO05D006190 3.1e-192 675.6 520 61.9
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 3.1e-192 675.6 556 62.8
SGA_v2.0_scaffold279G46769 Striga asiatica HOM05D004979 ORTHO05D006190 4.0e-192 675.2 526 63.9
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 1.2e-191 673.7 698 51.7
FAN23G0202 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.9e-189 666.4 519 63.8
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 7.0e-189 664.5 577 59.4
SEGI_04903 Sequoiadendron giganteum HOM05D004979 ORTHO05D006190 2.7e-188 662.5 527 59.8
Sc05g0004380 Simmondsia chinensis HOM05D004979 ORTHO05D006190 2.3e-187 659.4 435 70.6
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 5.6e-186 654.8 391 76.5
Lj9A238G55 Lonicera japonica HOM05D004979 ORTHO05D006190 2.9e-182 642.5 503 64.6
Lsat_1_v5_gn_5_7121 Lactuca sativa HOM05D004979 ORTHO05D006190 3.4e-175 619.0 517 61.1
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 7.8e-172 607.8 521 59.5
HPP92_023772 Vanilla planifolia HOM05D004979 ORTHO05D006190 4.3e-170 602.1 420 65.2
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.8e-160 570.1 363 72.7
Mapoly0050s0014 Marchantia polymorpha HOM05D004979 ORTHO05D006190 1.5e-159 567.0 524 53.4
Nn7g38157 Nelumbo nucifera HOM05D004979 ORTHO05D006190 9.3e-157 557.8 493 58.6
Pp3c2_38270 Physcomitrium patens HOM05D004979 ORTHO05D006190 9.0e-152 541.2 533 51.6
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 1.0e-147 527.7 333 72.4
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.5e-146 523.1 318 75.5
FAN10G2429 Fragaria x ananassa HOM05D004979 ORTHO05D006190 4.3e-146 522.3 516 53.7
SMO145G0201 Selaginella moellendorffii HOM05D004979 ORTHO05D006190 8.2e-145 518.1 510 52.4
SalBow3G2171 Salvia bowleyana HOM05D004979 ORTHO05D006190 2.2e-137 493.4 349 67.0
CBR_g16989 Chara braunii HOM05D004979 ORTHO05D006190 9.0e-136 488.0 550 46.4
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 3.2e-133 479.6 519 49.1
Lj5C315T9 Lonicera japonica HOM05D004979 ORTHO05D006190 7.9e-132 474.9 290 75.2
Rhsim04G0165200 Rhododendron simsii HOM05D004979 ORTHO05D006190 5.3e-128 462.2 356 64.6
AagrBONN_evm.TU.Sc2ySwM_344.2018 Anthoceros agrestis HOM05D004979 ORTHO05D006190 3.4e-127 459.5 445 51.2
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 8.8e-123 444.9 253 79.8
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 4.5e-119 432.6 336 61.3
COL.COLO4_28214 Corchorus olitorius HOM05D004979 ORTHO05D006190 1.4e-107 394.4 286 64.7
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 4.4e-106 389.4 228 78.9
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 4.4e-106 389.4 228 78.9
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 6.3e-105 385.6 230 75.7
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 1.6e-103 380.9 228 75.0
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 5.6e-77 292.7 528 37.5
GSVIVG01007210001 Vitis vinifera HOM05D004979 ORTHO05D006190 3.1e-75 287.0 208 66.8
GSVIVG01007430001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.5e-74 284.6 208 66.8
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 2.6e-74 283.9 166 77.1
ClCG03G002030 Citrullus lanatus HOM05D004979 ORTHO05D006190 8.3e-73 278.9 175 83.4
Cre14.g617150 Chlamydomonas reinhardtii HOM05D004979 ORTHO05D006190 4.1e-72 276.6 556 34.4
Cpa.g.sc46.2 Carica papaya HOM05D004979 ORTHO05D006190 3.3e-69 266.9 240 57.1
Cfa022844 Carpinus fangiana HOM05D004979 ORTHO05D006190 8.1e-68 262.3 564 33.0
PRCOL_00000039 Prasinoderma coloniale HOM05D004979 ORTHO05D006190 8.1e-68 262.3 515 35.5
MCO11G558 Micromonas commoda HOM05D004979 ORTHO05D006190 1.9e-64 251.1 503 35.4
Actinidia01657 Actinidia chinensis HOM05D004979 ORTHO05D006190 9.2e-64 248.8 354 45.8
CAN.G1164.35 Capsicum annuum HOM05D004979 ORTHO05D006190 7.8e-63 245.7 169 68.0
HanXRQChr14g0439781 Helianthus annuus HOM05D004979 ORTHO05D006190 4.9e-57 226.5 198 54.0
SHI20228 Sapria himalayana HOM05D004979 ORTHO05D006190 4.9e-49 199.9 269 41.6
DCAR_032148 Daucus carota HOM05D004979 ORTHO05D006190 7.4e-37 159.5 337 32.6
Lsat_1_v5_gn_8_74721 Lactuca sativa HOM05D004979 ORTHO05D006190 5.3e-35 153.3 85 75.3
Actinidia27722 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.5e-29 135.2 196 42.9
MBI07_g39750_MAGBIO Magnolia biondii HOM05D004979 ORTHO05D006190 1.9e-29 134.8 115 57.4
Lsat_1_v5_gn_8_74741 Lactuca sativa HOM05D004979 ORTHO05D006190 1.6e-28 131.7 105 61.0
GSVIVG01004371001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.4e-27 128.6 103 64.1
FAN19G1386 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.1e-27 127.5 142 50.7
QL03p011256 Quercus lobata HOM05D004979 ORTHO05D006190 4.0e-27 127.1 79 78.5
CDE04G1277 Ceratophyllum demersum HOM05D004979 ORTHO05D006190 5.3e-27 126.7 99 61.6
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 1.2e-23 115.5 120 49.2
Rhsim05G0125000 Rhododendron simsii HOM05D004979 ORTHO05D006190 2.2e-20 104.8 307 30.3
Aqoxy2G02599 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 1.4e-11 75.5 41 68.3
SHI20227 Sapria himalayana HOM05D004979 ORTHO05D006190 3.8e-09 67.4 50 66.0
AagrBONN_evm.TU.Sc2ySwM_117.715 Anthoceros agrestis HOM05D004979 ORTHO05D006190 4.7e-07 60.5 96 35.4
Medtr3g085120 Medicago truncatula HOM05D002545 ORTHO05D002335 3.9e-06 57.4 129 28.7
Sc05g0003730 Simmondsia chinensis HOM05D004979 ORTHO05D006190 3.9e-06 57.4 80 41.2


User provided reference genes

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