Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 2.0e-308 1061.6 526 100.0
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 3.7e-299 1030.8 526 96.8
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 3.6e-278 961.1 528 90.5
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 1.2e-249 866.3 537 81.0
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 1.4e-189 666.8 523 65.0
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 1.2e-188 663.7 537 64.2
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 1.7e-187 659.8 532 64.7
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 1.9e-186 656.4 528 64.6
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 2.3e-184 649.4 523 64.2
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 2.3e-184 649.4 523 64.2
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 3.9e-184 648.7 523 62.3
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 5.1e-184 648.3 523 64.2
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 6.7e-184 647.9 534 62.9
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 6.7e-184 647.9 537 64.6
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 3.7e-182 642.1 525 63.0
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 6.3e-182 641.3 523 62.1
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 8.2e-182 641.0 523 64.1
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 1.8e-181 639.8 520 62.9
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 3.1e-181 639.0 534 62.5
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 3.5e-180 635.6 525 62.7
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 2.2e-179 632.9 528 61.7
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 5.0e-179 631.7 547 60.9
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 5.0e-179 631.7 547 60.9
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 4.2e-178 628.6 537 60.5
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 8.2e-174 614.4 522 61.3
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 8.2e-174 614.4 527 60.2
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 5.3e-173 611.7 558 60.4
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 7.7e-172 607.8 552 58.9
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 2.2e-171 606.3 526 59.5
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.0e-169 597.8 552 57.8
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 1.8e-168 596.7 545 59.3
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 8.8e-168 594.3 525 58.5
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 4.8e-166 588.6 511 61.1
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 1.8e-165 586.6 533 58.9
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 3.1e-165 585.9 529 57.8
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 3.1e-165 585.9 522 58.0
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 7.0e-165 584.7 514 59.7
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 1.1e-162 577.4 552 59.2
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 5.5e-162 575.1 523 58.9
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 7.2e-162 574.7 522 56.7
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 8.0e-161 571.2 518 58.9
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 2.6e-159 566.2 481 61.5
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 7.5e-159 564.7 526 56.7
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 1.8e-157 560.1 526 55.7
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 2.3e-155 553.1 523 55.3
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 1.2e-153 547.4 522 54.0
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 1.0e-152 544.3 522 53.8
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 1.8e-152 543.5 523 55.1
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 2.3e-152 543.1 529 53.9
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 2.6e-151 539.7 528 54.7
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 2.6e-151 539.7 520 57.3
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 1.7e-150 537.0 542 53.7
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 3.2e-149 532.7 540 53.5
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 5.4e-149 531.9 529 54.4
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 5.4e-149 531.9 522 53.3
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 7.0e-149 531.6 542 53.0
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 1.6e-148 530.4 530 54.5
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 5.9e-148 528.5 539 50.6
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 1.7e-147 526.9 523 52.8
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 6.6e-147 525.0 525 53.9
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 3.6e-145 519.2 523 52.2
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 6.2e-145 518.5 527 52.4
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 1.0e-144 517.7 548 52.6
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 1.0e-144 517.7 527 53.9
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 2.6e-143 513.1 527 52.4
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 4.4e-143 512.3 523 51.8
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 6.4e-142 508.4 523 51.8
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 1.9e-141 506.9 523 52.4
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 5.4e-141 505.4 525 52.2
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 2.0e-140 503.4 552 50.4
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 1.3e-139 500.7 528 51.5
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 1.7e-139 500.4 528 51.3
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 9.5e-138 494.6 531 50.3
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 3.6e-137 492.7 521 51.4
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 4.7e-137 492.3 535 49.7
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 3.1e-136 489.6 525 50.9
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 5.8e-135 485.3 525 52.0
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 3.7e-134 482.6 509 49.9
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 4.9e-134 482.3 527 48.8
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 1.1e-133 481.1 529 49.7
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 1.1e-133 481.1 508 49.6
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 2.4e-133 479.9 529 48.2
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 4.6e-132 475.7 522 51.0
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 6.0e-132 475.3 526 48.1
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 7.8e-132 474.9 526 48.1
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 1.3e-131 474.2 528 50.2
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 1.7e-131 473.8 530 48.1
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 3.0e-131 473.0 527 49.3
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 3.9e-131 472.6 530 49.2
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 7.3e-130 468.4 526 48.5
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 6.2e-129 465.3 528 47.7
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 1.4e-128 464.2 565 46.7
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 2.6e-127 459.9 523 48.6
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 5.8e-127 458.8 528 48.5
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 2.9e-126 456.4 527 47.4
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 3.7e-126 456.1 528 47.7
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 4.9e-126 455.7 528 47.5
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 1.1e-125 454.5 527 47.2
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 1.3e-123 447.6 531 46.9
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 2.3e-123 446.8 472 52.1
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 3.0e-123 446.4 528 46.2
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 1.2e-119 434.5 482 52.1
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 5.1e-115 419.1 564 44.0
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 2.5e-114 416.8 536 46.1
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 7.3e-114 415.2 519 44.1
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 9.6e-114 414.8 531 45.0
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 6.2e-113 412.1 540 45.9
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.9e-110 403.3 511 44.6
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 8.4e-110 401.7 536 42.2
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 3.2e-109 399.8 529 41.8
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 1.9e-106 390.6 523 44.6
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 1.4e-104 384.4 507 41.8
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 8.4e-102 375.2 530 41.5
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 1.1e-101 374.8 533 41.8
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 1.8e-99 367.5 406 49.3
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.5e-95 352.8 511 41.3
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 1.0e-91 341.7 520 39.2
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 1.3e-89 334.7 562 38.6
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 1.3e-89 334.7 472 42.6
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.6e-84 317.8 518 37.8
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.5e-82 310.5 518 37.6
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.4e-79 300.1 528 36.7
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.6e-76 290.0 477 37.9
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.3e-75 287.3 477 37.7
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 2.5e-69 267.3 507 34.1
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 2.5e-61 240.7 528 31.6
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 9.7e-58 228.8 474 34.4
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 9.7e-58 228.8 474 34.4
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.2e-57 225.7 388 38.1
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 2.0e-50 204.5 294 43.9
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 3.7e-49 200.3 141 69.5
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 1.6e-47 194.9 143 69.9
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 3.8e-46 190.3 314 40.1
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 5.5e-45 186.4 170 57.6
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 2.5e-37 161.0 537 25.9
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 3.3e-37 160.6 488 27.7
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 1.2e-36 158.7 533 28.0
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 2.4e-32 144.4 540 25.6
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 3.2e-32 144.1 437 27.7
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 2.8e-28 131.0 462 25.1
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 1.7e-22 111.7 510 24.1
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 7.3e-21 106.3 457 23.2
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 3.1e-19 100.9 65 69.2
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 1.2e-18 99.0 98 55.1
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.6e-18 97.8 299 28.8
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 2.7e-15 87.8 119 38.7
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 7.8e-15 86.3 55 74.5
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 1.5e-13 82.0 200 33.5
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 2.5e-13 81.3 53 60.4
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 1.2e-12 79.0 127 33.9
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 3.6e-12 77.4 110 37.3
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.6e-12 77.4 82 48.8
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 4.7e-12 77.0 390 24.1
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 2.3e-11 74.7 111 37.8
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 2.1e-07 61.6 61 39.3


User provided reference genes

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