Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G012840 Cucumis sativus L. HOM05D005434 ORTHO05D006412 0.0e+00 1506.9 795 100.0
MELO3C013628.2 Cucumis melo HOM05D005434 ORTHO05D006412 0.0e+00 1281.9 790 87.7
ClCG02G017720 Citrullus lanatus HOM05D005434 ORTHO05D006412 0.0e+00 1130.9 777 79.2
Sed0026347 Sechium edule HOM05D005434 ORTHO05D006412 3.9e-268 928.3 810 65.8
Sed0005889 Sechium edule HOM05D005434 ORTHO05D006412 1.2e-264 916.8 839 62.5
QL12p035062 Quercus lobata HOM05D005434 ORTHO05D006412 7.9e-120 435.6 800 40.8
Manes.05G008100 Manihot esculenta HOM05D005434 ORTHO05D006412 9.7e-110 402.1 818 37.2
Haze_05156 Corylus avellana HOM05D005434 ORTHO05D006412 1.7e-106 391.3 759 38.3
CiPaw.08G081800 Carya illinoinensis HOM05D005434 ORTHO05D006412 8.5e-106 389.0 822 36.9
Actinidia20964 Actinidia chinensis HOM05D005434 ORTHO05D006412 3.7e-101 373.6 806 36.5
MD09G1291300 Malus domestica HOM05D005434 ORTHO05D006412 4.8e-101 373.2 825 36.4
Prupe.3G001600 Prunus persica HOM05D005434 ORTHO05D006412 3.5e-99 367.1 772 38.1
Potri.002G186200 Populus trichocarpa HOM05D005434 ORTHO05D006412 8.5e-98 362.5 866 35.6
RcHm_v2.0_Chr3g0485651 Rosa chinensis HOM05D005434 ORTHO05D006412 1.5e-97 361.7 817 35.4
Rhsim02G0256300 Rhododendron simsii HOM05D005434 ORTHO05D006412 9.4e-97 359.0 797 37.0
Atru.chr5.851 Acer truncatum HOM05D005434 ORTHO05D006412 2.1e-96 357.8 843 35.5
MD17G1286100 Malus domestica HOM05D005434 ORTHO05D006412 1.7e-93 348.2 826 35.1
Thecc.01G326300 Theobroma cacao HOM05D005434 ORTHO05D006412 2.2e-93 347.8 816 34.6
Glyma.02G007100 Glycine max HOM05D005434 ORTHO05D006412 1.4e-92 345.1 806 35.5
Dinv12078 Davidia involucrata HOM05D005434 ORTHO05D006412 1.6e-91 341.7 667 39.4
Potri.014G111500 Populus trichocarpa HOM05D005434 ORTHO05D006412 4.5e-91 340.1 867 34.9
COL.COLO4_23119 Corchorus olitorius HOM05D005434 ORTHO05D006412 7.7e-91 339.3 798 35.0
Duzib138G0614 Durio zibethinus HOM05D005434 ORTHO05D006412 1.5e-89 335.1 799 34.2
Lj5g0001301 Lotus japonicus HOM05D005434 ORTHO05D006412 1.9e-89 334.7 827 35.1
Duzib133G0025 Durio zibethinus HOM05D005434 ORTHO05D006412 1.2e-88 332.0 773 34.8
Glyma.10G138700 Glycine max HOM05D005434 ORTHO05D006412 2.1e-88 331.3 827 34.6
Phvul.007G208600 Phaseolus vulgaris HOM05D005434 ORTHO05D006412 2.3e-87 327.8 801 35.1
TWI14G0253 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 1.3e-85 322.0 866 33.4
Gorai.001G148200 Gossypium raimondii HOM05D005434 ORTHO05D006412 4.1e-84 317.0 808 33.7
Psat6g158560 Pisum sativum HOM05D005434 ORTHO05D006412 1.2e-83 315.5 809 34.7
TPR.G3083 Trifolium pratense HOM05D005434 ORTHO05D006412 8.6e-82 309.3 794 34.0
Sabra14G0081900 Salix brachista HOM05D005434 ORTHO05D006412 9.5e-81 305.8 839 33.5
Gohir.A07G131800 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.8e-79 301.6 812 34.6
arahy.Tifrunner.gnm1.ann1.G6BN46 Arachis hypogaea HOM05D005434 ORTHO05D006412 5.2e-79 300.1 842 31.8
FvH4_1g26160 Fragaria vesca HOM05D005434 ORTHO05D006412 5.2e-79 300.1 891 31.8
FAN19G2204 Fragaria x ananassa HOM05D005434 ORTHO05D006412 7.5e-78 296.2 891 31.9
FAN23G2884 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.8e-76 291.6 883 32.7
Medtr1g085710 Medicago truncatula HOM05D005434 ORTHO05D006412 7.8e-75 286.2 809 33.3
TAR636G0087 Trochodendron aralioides HOM05D005434 ORTHO05D006412 6.6e-74 283.1 810 31.9
Gohir.A11G105400 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.2e-72 278.9 868 30.2
Gohir.D11G110300 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.0e-71 275.8 866 30.6
Ca_10237_v3 Cicer arietinum L. HOM05D005434 ORTHO05D006412 2.3e-71 274.6 781 33.5
Gorai.007G117900 Gossypium raimondii HOM05D005434 ORTHO05D006412 5.2e-71 273.5 869 30.6
SHI34042 Sapria himalayana HOM05D005434 ORTHO05D006412 5.2e-71 273.5 793 32.0
CANSAT25G2989 Cannabis sativa HOM05D005434 ORTHO05D006412 2.6e-70 271.2 930 29.7
Gohir.D07G136100 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.4e-68 265.4 759 32.5
VMungo0720G1215 Vigna mungo HOM05D005434 ORTHO05D006412 5.0e-66 256.9 742 32.7
TAR365G0925 Trochodendron aralioides HOM05D005434 ORTHO05D006412 8.6e-66 256.1 811 30.8
FAN26G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.1e-63 249.2 861 30.7
Aqoxy2G02439 Aquilegia oxysepala HOM05D005434 ORTHO05D006412 5.2e-63 246.9 863 31.1
CSS0010810 Camellia sinensis var. sinensis HOM05D005434 ORTHO05D006412 8.9e-63 246.1 558 35.8
CiPaw.07G126300 Carya illinoinensis HOM05D005434 ORTHO05D006412 1.1e-60 239.2 627 34.9
Cc01_g21750 Coffea canephora HOM05D005434 ORTHO05D006412 4.1e-60 237.3 822 31.3
Migut.D00008 Erythranthe guttata HOM05D005434 ORTHO05D006412 9.2e-60 236.1 824 30.0
Cpa.g.sc57.27 Carica papaya HOM05D005434 ORTHO05D006412 3.5e-59 234.2 773 29.9
PSO210G4596 Papaver somniferum HOM05D005434 ORTHO05D006412 3.5e-59 234.2 899 29.6
CARHR142350 Cardamine hirsuta HOM05D005434 ORTHO05D006412 6.0e-59 233.4 811 29.2
AL4G46460 Arabidopsis lyrata HOM05D005434 ORTHO05D006412 7.8e-59 233.0 821 29.1
AT2G46980 Arabidopsis thaliana HOM05D005434 ORTHO05D006412 1.3e-58 232.3 831 29.1
DCAR_002941 Daucus carota HOM05D005434 ORTHO05D006412 1.1e-57 229.2 793 28.9
DCAR_005712 Daucus carota HOM05D005434 ORTHO05D006412 7.3e-57 226.5 899 29.0
Sopen01g030590 Solanum pennellii HOM05D005434 ORTHO05D006412 2.8e-56 224.6 835 28.3
Sp4g28980 Schrenkiella parvula HOM05D005434 ORTHO05D006412 3.6e-56 224.2 815 29.2
C04p00990 Brassica napus HOM05D005434 ORTHO05D006412 4.7e-56 223.8 803 28.5
PGSC0003DMG400001122 Solanum tuberosum HOM05D005434 ORTHO05D006412 1.8e-55 221.9 829 29.0
Solyc01g079080.3 Solanum lycopersicum HOM05D005434 ORTHO05D006412 2.3e-55 221.5 819 28.6
CAN.G179.30 Capsicum annuum HOM05D005434 ORTHO05D006412 1.2e-54 219.2 823 27.9
FAN28G1136 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.2e-54 219.2 936 28.5
PGR142G2929 Punica granatum HOM05D005434 ORTHO05D006412 4.4e-54 217.2 971 28.3
Peaxi162Scf00309g00625 Petunia axillaris HOM05D005434 ORTHO05D006412 7.6e-54 216.5 842 28.7
BraA05t19085Z Brassica rapa HOM05D005434 ORTHO05D006412 9.9e-54 216.1 816 28.8
GSVIVG01028240001 Vitis vinifera HOM05D005434 ORTHO05D006412 9.9e-54 216.1 578 33.6
Ciclev10019510m.g Citrus clementina HOM05D005434 ORTHO05D006412 6.4e-53 213.4 586 33.6
Carub.0004s2971 Capsella rubella HOM05D005434 ORTHO05D006412 1.1e-52 212.6 815 28.7
Nn3g21972 Nelumbo nucifera HOM05D005434 ORTHO05D006412 1.6e-51 208.8 912 27.9
Nitab4.5_0000222g0380 Nicotiana tabacum HOM05D005434 ORTHO05D006412 6.0e-51 206.8 832 26.1
MBI18_g03842_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 1.5e-49 202.2 833 29.4
Thhalv10001318m.g Eutrema salsugineum HOM05D005434 ORTHO05D006412 2.5e-49 201.4 815 28.3
Eucgr.K00557 Eucalyptus grandis HOM05D005434 ORTHO05D006412 3.3e-49 201.1 832 28.6
Oeu052591.1 Olea europaea HOM05D005434 ORTHO05D006412 4.3e-49 200.7 730 28.9
ECA247G2130 Erigeron canadensis HOM05D005434 ORTHO05D008082 3.6e-48 197.6 824 27.7
Aa31LG1G28350 Aethionema arabicum HOM05D005434 ORTHO05D006412 1.8e-47 195.3 817 27.2
Lsat_1_v5_gn_9_7120 Lactuca sativa HOM05D005434 ORTHO05D006412 4.0e-47 194.1 810 27.8
TWI23G0760 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 9.9e-46 189.5 542 32.8
MBI19_g04828_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 1.7e-45 188.7 848 28.1
arahy.Tifrunner.gnm1.ann1.9BA1LG Arachis hypogaea HOM05D005434 ORTHO05D006412 1.2e-43 182.6 641 29.3
A05p00820 Brassica napus HOM05D005434 ORTHO05D006412 6.0e-43 180.3 762 28.1
Lalb_Chr02g0147191 Lupinus albus HOM05D005434 ORTHO05D006412 6.6e-42 176.8 590 32.0
BolC4t21751H Brassica oleracea HOM05D005434 ORTHO05D006412 8.7e-42 176.4 801 27.0
BcaC02g12826 Brassica carinata HOM05D005434 ORTHO05D006412 3.3e-41 174.5 818 26.5
AUR62011691 Chenopodium quinoa HOM05D005434 ORTHO05D006412 2.8e-40 171.4 826 28.7
Lalb_Chr02g0147201 Lupinus albus HOM05D005434 ORTHO05D006412 2.6e-38 164.9 169 53.3
BcaC02g12619 Brassica carinata HOM05D005434 ORTHO05D006412 4.5e-38 164.1 618 26.9
Dinv33176 Davidia involucrata HOM05D005434 ORTHO05D006412 3.8e-37 161.0 404 33.2
Nitab4.5_0003092g0060 Nicotiana tabacum HOM05D005434 ORTHO05D006412 1.9e-36 158.7 884 25.2
EL10Ac4g10377 Beta vulgaris HOM05D005434 ORTHO05D006412 9.3e-36 156.4 802 27.2
Lj1A7G43 Lonicera japonica HOM05D005434 ORTHO05D006412 2.1e-35 155.2 218 45.0
Sc17g0000070 Simmondsia chinensis HOM05D005434 ORTHO05D006412 2.7e-35 154.8 807 26.1
SGA_v2.0_scaffold310G48189 Striga asiatica HOM05D005434 ORTHO05D006412 6.2e-32 143.7 812 25.5
Lj1A7T44 Lonicera japonica HOM05D005434 ORTHO05D006412 1.8e-31 142.1 511 29.0
AUR62024551 Chenopodium quinoa HOM05D005434 ORTHO05D006412 9.0e-31 139.8 804 26.9
SGA_v2.0_scaffold417G51248 Striga asiatica HOM05D005434 ORTHO05D006412 1.5e-30 139.0 921 24.5
Actinidia25873 Actinidia chinensis HOM05D005434 ORTHO05D006412 2.2e-29 135.2 630 27.1
GSVIVG01028239001 Vitis vinifera HOM05D005434 ORTHO05D006412 2.4e-28 131.7 137 51.8
CiPaw.07G126400 Carya illinoinensis HOM05D005434 ORTHO05D006412 4.6e-27 127.5 135 51.1
Sc17g0000050 Simmondsia chinensis HOM05D005434 ORTHO05D006412 2.0e-22 112.1 165 38.8
Dinv33178 Davidia involucrata HOM05D005434 ORTHO05D006412 2.2e-21 108.6 107 57.0
HPP92_011320 Vanilla planifolia HOM05D005434 ORTHO05D006412 2.9e-21 108.2 873 24.1
CDE02G0039 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 3.9e-18 97.8 166 36.7
Zm00001eb233800 Zea mays HOM05D005434 ORTHO05D006412 1.1e-17 96.3 639 25.2
Ciclev10023478m.g Citrus clementina HOM05D005434 ORTHO05D006412 2.1e-16 92.0 92 54.3
BcaB07g33880 Brassica carinata HOM05D005434 ORTHO05D006412 4.8e-16 90.9 349 26.1
Os10g0405500 Oryza sativa ssp. japonica HOM05D005434 ORTHO05D006412 1.8e-15 89.0 732 24.5
Dinv33187 Davidia involucrata HOM05D005434 ORTHO05D006412 2.7e-11 75.1 143 36.4
Dinv12077 Davidia involucrata HOM05D005434 ORTHO05D006412 1.8e-10 72.4 59 61.0
unitig_62.g23901 Utricularia gibba HOM05D005434 ORTHO05D006412 1.8e-10 72.4 229 29.3
FAN12G4172 Fragaria x ananassa HOM05D005434 ORTHO05D006412 2.3e-10 72.0 112 37.5
Actinidia21335 Actinidia chinensis HOM05D005434 ORTHO05D006412 2.8e-08 65.1 118 37.3
Sc17g0000060 Simmondsia chinensis HOM05D005434 ORTHO05D006412 2.4e-07 62.0 398 25.1
PGSC0003DMG400023095 Solanum tuberosum HOM05D005434 ORTHO05D007977 9.1e-07 60.1 97 38.1
C03p30750 Brassica napus HOM05D005434 ORTHO05D011138 1.5e-06 59.3 78 37.2
BolC3t15425H Brassica oleracea HOM05D005434 ORTHO05D006412 2.6e-06 58.5 78 35.9
CDE08G1326 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 4.5e-06 57.8 62 43.5
FAN18G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 5.9e-06 57.4 168 29.2


User provided reference genes

Program Settings