Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G012600 Cucumis sativus L. HOM05D007156 ORTHO05D003871 5.7e-50 200.7 105 100.0
ClCG02G011170 Citrullus lanatus HOM05D007156 ORTHO05D003871 2.3e-35 152.1 106 75.5
Sed0003235 Sechium edule HOM05D007156 ORTHO05D003871 1.6e-23 112.8 104 63.5
MELO3C019764.2 Cucumis melo HOM05D007156 ORTHO05D003871 7.2e-13 77.4 47 85.1
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 9.5e-13 77.0 77 57.1
Hma1.2p1_0712F.1_g207550 Hydrangea macrophylla HOM05D007156 ORTHO05D003871 2.1e-12 75.9 53 67.9
Sed0007405 Sechium edule HOM05D007156 ORTHO05D003871 2.1e-12 75.9 101 44.6
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 2.7e-12 75.5 73 57.5
ClCG02G001520 Citrullus lanatus HOM05D007156 ORTHO05D003871 6.1e-12 74.3 56 64.3
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.0e-11 73.6 76 53.9
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.0e-11 73.6 76 53.9
QL08p034497 Quercus lobata HOM05D007156 ORTHO05D003871 1.4e-11 73.2 75 56.0
Ciclev10017232m.g Citrus clementina HOM05D007156 ORTHO05D003871 1.8e-11 72.8 53 69.8
Psat5g266920 Pisum sativum HOM05D007156 ORTHO05D003871 8.8e-11 70.5 101 44.6
RcHm_v2.0_Chr2g0160641 Rosa chinensis HOM05D007156 ORTHO05D003871 8.8e-11 70.5 48 75.0
FvH4_6g43890 Fragaria vesca HOM05D007156 ORTHO05D003871 2.0e-10 69.3 48 72.9
FAN02G1242 Fragaria x ananassa HOM05D007156 ORTHO05D003871 2.0e-10 69.3 48 72.9
FAN05G2387 Fragaria x ananassa HOM05D007156 ORTHO05D003871 2.0e-10 69.3 48 72.9
FAN09G0550 Fragaria x ananassa HOM05D007156 ORTHO05D003871 2.0e-10 69.3 48 72.9
FAN14G5947 Fragaria x ananassa HOM05D007156 ORTHO05D003871 2.0e-10 69.3 48 72.9
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 2.0e-10 69.3 56 64.3
CiPaw.04G120100 Carya illinoinensis HOM05D007156 ORTHO05D003871 2.6e-10 68.9 60 60.0
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 2.6e-10 68.9 76 52.6
Haze_12992 Corylus avellana HOM05D007156 ORTHO05D003871 3.4e-10 68.6 114 42.1
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 3.4e-10 68.6 55 65.5
CsaV3_7G003930 Cucumis sativus L. HOM05D007156 ORTHO05D003871 5.7e-10 67.8 87 46.0
Lalb_Chr24g0393601 Lupinus albus HOM05D007156 ORTHO05D003871 7.5e-10 67.4 61 63.9
TPR.G18057 Trifolium pratense HOM05D007156 ORTHO05D003871 9.8e-10 67.0 113 38.1
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 1.3e-09 66.6 48 68.8
TAR271G0004 Trochodendron aralioides HOM05D007156 ORTHO05D003871 1.3e-09 66.6 59 59.3
unitig_746.g26730 Utricularia gibba HOM05D007156 ORTHO05D003871 1.3e-09 66.6 63 55.6
Glyma.13G304200 Glycine max HOM05D007156 ORTHO05D003871 1.7e-09 66.2 61 57.4
Atru.chr6.3108 Acer truncatum HOM05D007156 ORTHO05D003871 2.2e-09 65.9 45 66.7
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 2.2e-09 65.9 56 58.9
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 2.2e-09 65.9 46 71.7
Phvul.005G111100 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 2.2e-09 65.9 56 60.7
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 2.8e-09 65.5 46 71.7
Cfa014479 Carpinus fangiana HOM05D007156 ORTHO05D003871 3.7e-09 65.1 47 70.2
Medtr0945s0020 Medicago truncatula HOM05D007156 ORTHO05D003871 3.7e-09 65.1 46 73.9
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 3.7e-09 65.1 46 69.6
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 4.9e-09 64.7 46 69.6
Nitab4.5_0001302g0030 Nicotiana tabacum HOM05D007156 ORTHO05D003871 4.9e-09 64.7 80 40.0
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 6.3e-09 64.3 58 60.3
Ca_01559_v3 Cicer arietinum L. HOM05D007156 ORTHO05D003871 8.3e-09 63.9 45 66.7
Psat7g163320 Pisum sativum HOM05D007156 ORTHO05D003871 8.3e-09 63.9 47 72.3
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 1.1e-08 63.5 55 61.8
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 1.1e-08 63.5 45 68.9
TPR.G19047 Trifolium pratense HOM05D007156 ORTHO05D003871 1.1e-08 63.5 46 69.6
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 1.8e-08 62.8 57 61.4
MD09G1102100 Malus domestica HOM05D007156 ORTHO05D003871 3.1e-08 62.0 106 36.8
MD09G1127500 Malus domestica HOM05D007156 ORTHO05D003871 3.1e-08 62.0 110 38.2
Sabra13G0122400 Salix brachista HOM05D007156 ORTHO05D003871 3.1e-08 62.0 46 71.7
Thecc.02G165500 Theobroma cacao HOM05D007156 ORTHO05D003871 3.1e-08 62.0 111 39.6
Nitab4.5_0009996g0020 Nicotiana tabacum HOM05D007156 ORTHO05D003871 5.4e-08 61.2 77 44.2
Actinidia12482 Actinidia chinensis HOM05D007156 ORTHO05D003871 9.2e-08 60.5 57 57.9
Cpa.g.sc34.47 Carica papaya HOM05D007156 ORTHO05D003871 9.2e-08 60.5 101 42.6
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 9.2e-08 60.5 121 38.8
PGSC0003DMG400026188 Solanum tuberosum HOM05D007156 ORTHO05D003871 9.2e-08 60.5 73 43.8
VMungo1080G0311 Vigna mungo HOM05D007156 ORTHO05D003871 9.2e-08 60.5 46 67.4
CiPaw.03G165400 Carya illinoinensis HOM05D007156 ORTHO05D003871 1.6e-07 59.7 74 45.9
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 1.6e-07 59.7 49 57.1
Sed0001937 Sechium edule HOM05D007156 ORTHO05D003871 1.6e-07 59.7 45 62.2
PGSC0003DMG400013754 Solanum tuberosum HOM05D007156 ORTHO05D003871 1.6e-07 59.7 94 40.4
SGA_v2.0_scaffold70G23435 Striga asiatica HOM05D007156 ORTHO05D003871 4.5e-07 58.2 60 53.3
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 5.9e-07 57.8 52 51.9
COL.COLO4_13040 Corchorus olitorius HOM05D007156 ORTHO05D003871 7.7e-07 57.4 111 40.5
Migut.M00380 Erythranthe guttata HOM05D007156 ORTHO05D003871 7.7e-07 57.4 73 45.2
CAN.G86.35 Capsicum annuum HOM05D007156 ORTHO05D003871 1.0e-06 57.0 56 51.8
Dinv18559 Davidia involucrata HOM05D007156 ORTHO05D003871 1.0e-06 57.0 42 71.4
Rhsim06G0154900 Rhododendron simsii HOM05D007156 ORTHO05D003871 1.0e-06 57.0 44 65.9
Gohir.A04G106700 Gossypium hirsutum HOM05D007156 ORTHO05D003871 1.3e-06 56.6 56 55.4
Sabra04G0016700 Salix brachista HOM05D007156 ORTHO05D003871 1.3e-06 56.6 84 41.7
Sopen07g026540 Solanum pennellii HOM05D007156 ORTHO05D003871 1.7e-06 56.2 86 36.0
unitig_899.g15247 Utricularia gibba HOM05D007156 ORTHO05D003871 1.7e-06 56.2 67 49.3
ATR0804G053 Amborella trichopoda HOM05D007156 ORTHO05D003871 2.3e-06 55.8 48 58.3
Lj3g0015957 Lotus japonicus HOM05D007156 ORTHO05D003871 2.9e-06 55.5 109 38.5
Aqoxy4G02532 Aquilegia oxysepala HOM05D007156 ORTHO05D003871 3.8e-06 55.1 80 41.2
Gohir.D02G185700 Gossypium hirsutum HOM05D007156 ORTHO05D003871 5.0e-06 54.7 52 57.7
Gorai.005G208200 Gossypium raimondii HOM05D007156 ORTHO05D003871 5.0e-06 54.7 52 57.7
Gorai.012G132600 Gossypium raimondii HOM05D007156 ORTHO05D003871 5.0e-06 54.7 49 61.2
C03p43730 Brassica napus HOM05D007866 ORTHO05D003871 6.6e-06 54.3 63 42.9
CSS0043735 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 8.6e-06 53.9 112 34.8
Solyc07g052990.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 8.6e-06 53.9 41 63.4
Solyc12g005690.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 8.6e-06 53.9 49 51.0
PGSC0003DMG400021719 Solanum tuberosum HOM05D001601 ORTHO05D006936 8.6e-06 53.9 47 51.1


User provided reference genes

Program Settings