Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 5.2e-165 584.3 297 100.0
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 1.7e-139 499.6 297 86.5
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 7.3e-103 377.9 297 68.7
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 5.8e-76 288.5 266 58.3
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 5.8e-76 288.5 301 53.5
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 7.6e-76 288.1 295 53.6
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 6.5e-75 285.0 295 53.2
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 8.4e-75 284.6 264 58.7
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 5.1e-72 275.4 291 52.9
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 6.7e-72 275.0 301 52.5
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 8.7e-72 274.6 295 53.2
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 6.3e-70 268.5 294 53.7
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 3.1e-69 266.2 294 52.0
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 6.9e-69 265.0 294 52.4
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 2.0e-68 263.5 295 50.2
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 2.0e-68 263.5 297 51.2
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 2.9e-67 259.6 294 52.0
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 2.9e-67 259.6 294 53.4
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 4.2e-66 255.8 277 52.3
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 4.2e-66 255.8 294 50.7
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 4.2e-66 255.8 294 50.7
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 2.1e-65 253.4 285 52.6
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 7.9e-65 251.5 282 50.7
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 1.8e-64 250.4 276 50.7
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 3.0e-64 249.6 298 50.7
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.9e-64 249.2 265 53.2
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 5.1e-64 248.8 282 49.6
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 8.8e-64 248.1 289 50.5
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.8e-62 243.0 295 49.5
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 6.9e-61 238.4 296 49.7
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.2e-60 237.7 295 49.5
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 1.2e-60 237.7 298 50.0
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 2.0e-60 236.9 297 49.5
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 1.0e-59 234.6 295 48.1
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 1.6e-57 227.3 287 49.5
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 2.7e-57 226.5 280 50.4
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 1.8e-56 223.8 300 48.0
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 2.3e-56 223.4 252 52.0
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 2.3e-56 223.4 291 48.5
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 4.4e-55 219.2 306 47.4
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 7.4e-55 218.4 264 47.0
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 7.4e-55 218.4 294 45.2
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 1.7e-54 217.2 300 46.7
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 1.1e-53 214.5 267 49.8
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 5.0e-51 205.7 283 45.6
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 6.5e-51 205.3 289 46.0
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 2.6e-47 193.4 217 50.7
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 3.3e-47 193.0 296 44.6
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 4.4e-47 192.6 251 45.4
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 4.4e-47 192.6 298 43.0
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 7.4e-47 191.8 273 45.1
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 2.8e-46 189.9 283 47.0
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 9.1e-45 184.9 296 43.2
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 1.6e-44 184.1 265 43.8
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 2.6e-44 183.3 282 43.6
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 3.5e-44 183.0 282 43.3
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 5.0e-43 179.1 304 43.1
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 1.1e-42 177.9 217 47.0
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 3.6e-41 172.9 301 42.5
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 6.1e-41 172.2 288 41.7
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 6.8e-40 168.7 244 43.4
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 8.8e-40 168.3 145 64.8
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 8.8e-40 168.3 146 63.7
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.2e-39 167.9 285 42.1
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 2.6e-39 166.8 298 39.6
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.4e-39 166.0 143 64.3
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 9.7e-39 164.9 273 39.6
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 9.7e-39 164.9 297 38.0
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.2e-38 163.7 146 62.3
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 2.8e-38 163.3 298 38.6
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.7e-38 162.9 146 61.6
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 3.7e-38 162.9 262 42.4
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 5.3e-37 159.1 267 40.1
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 9.1e-37 158.3 143 61.5
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 1.2e-36 157.9 290 39.0
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 1.6e-36 157.5 271 39.5
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 2.0e-36 157.1 267 39.0
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 3.5e-36 156.4 273 40.3
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 6.1e-33 145.6 288 37.2
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 1.4e-32 144.4 263 38.0
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 2.3e-32 143.7 316 35.4
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 2.3e-32 143.7 242 40.1
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 3.4e-31 139.8 244 39.3
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 2.2e-30 137.1 213 43.2
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 8.3e-30 135.2 296 35.8
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 5.4e-29 132.5 253 41.9
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 2.9e-27 126.7 291 31.6
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 8.6e-27 125.2 261 34.9
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 8.6e-27 125.2 275 34.5
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 4.2e-26 122.9 264 36.4
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 7.2e-26 122.1 288 31.9
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 7.2e-26 122.1 260 36.5
arahy.Tifrunner.gnm1.ann1.X4XIB4 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.6e-25 120.9 176 40.3
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 2.1e-25 120.6 109 61.5
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 4.7e-25 119.4 285 31.6
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.0e-24 118.2 287 33.4
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 1.4e-24 117.9 258 38.8
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 4.4e-23 112.8 278 36.7
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 5.7e-23 112.5 285 33.3
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.7e-22 110.9 283 35.0
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 1.7e-22 110.9 268 32.1
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 1.7e-22 110.9 268 32.1
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 2.2e-22 110.5 281 35.2
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 4.9e-22 109.4 268 32.8
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.1e-21 108.2 281 32.4
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 1.4e-21 107.8 284 34.5
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 5.4e-21 105.9 76 72.4
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 5.4e-21 105.9 76 69.7
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 7.0e-21 105.5 271 32.8
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 7.0e-21 105.5 233 39.5
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 1.2e-20 104.8 203 37.9
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 2.0e-20 104.0 285 35.1
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 5.9e-20 102.4 186 39.8
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 1.0e-19 101.7 76 68.4
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 1.7e-19 100.9 76 67.1
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 1.7e-19 100.9 93 59.1
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 3.9e-19 99.8 274 33.2
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 3.9e-19 99.8 110 50.0
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 5.0e-19 99.4 255 34.9
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 8.6e-19 98.6 272 32.4
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 1.5e-18 97.8 76 67.1
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 1.5e-18 97.8 257 31.5
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 1.9e-18 97.4 79 64.6
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 2.5e-18 97.1 273 32.6
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 5.6e-18 95.9 71 71.8
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 7.3e-18 95.5 277 36.1
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 1.2e-17 94.7 79 67.1
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 2.1e-17 94.0 299 31.1
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.8e-17 93.6 279 34.1
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 3.6e-17 93.2 79 65.8
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 4.7e-17 92.8 223 36.8
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 8.0e-17 92.0 265 31.7
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 2.3e-16 90.5 72 68.1
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 8.9e-16 88.6 289 32.2
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 8.9e-16 88.6 276 30.1
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 1.2e-15 88.2 99 53.5
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 1.2e-15 88.2 276 31.9
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.4e-15 86.7 276 33.3
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.4e-15 86.3 254 34.6
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 4.4e-15 86.3 116 44.8
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 5.8e-15 85.9 280 32.5
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 1.7e-14 84.3 191 36.6
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 1.7e-14 84.3 125 44.0
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 1.1e-13 81.6 262 27.9
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.1e-13 81.6 153 37.3
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 4.1e-13 79.7 133 39.8
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 1.6e-12 77.8 64 59.4
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 1.6e-12 77.8 274 31.0
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 2.0e-12 77.4 252 31.0
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 6.0e-12 75.9 225 32.0
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.3e-11 73.9 66 59.1
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 3.9e-11 73.2 248 29.8
SGA_v2.0_scaffold58G20314 Striga asiatica HOM05D003937 ORTHO05D004583 5.0e-11 72.8 192 32.8
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 6.6e-11 72.4 283 29.7
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 1.1e-10 71.6 71 49.3
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 1.5e-10 71.2 97 47.4
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 1.5e-10 71.2 206 31.6
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 1.9e-10 70.9 71 50.7
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 4.3e-10 69.7 263 28.9
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 5.6e-10 69.3 75 48.0
Peaxi162Scf00711g00414 Petunia axillaris HOM05D003937 ORTHO05D004583 7.3e-10 68.9 259 27.4
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 1.2e-09 68.2 85 44.7
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 2.8e-09 67.0 67 55.2
ClCG08G009390 Citrullus lanatus HOM05D003937 ORTHO05D004583 4.7e-09 66.2 276 30.1
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 1.4e-08 64.7 60 55.0
Pp3c19_6980 Physcomitrium patens HOM05D003937 ORTHO05D004583 2.3e-08 63.9 124 38.7
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 2.3e-08 63.9 286 26.9
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 4.0e-08 63.2 276 27.9
CDE05G1352 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 2.6e-07 60.5 234 28.2
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 7.5e-07 58.9 74 44.6
unitig_8.g3603 Utricularia gibba HOM05D000001 ORTHO05D000003 7.5e-07 58.9 252 27.8
HPP92_020992 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.3e-06 58.2 202 29.2
SMO347G0358 Selaginella moellendorffii HOM05D003937 ORTHO05D004583 3.7e-06 56.6 64 45.3
CDE06G2177 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 8.3e-06 55.5 67 49.3


User provided reference genes

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