Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 7.8e-109 397.1 198 100.0
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 5.6e-91 337.8 179 93.9
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 2.4e-78 295.8 160 92.5
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 2.5e-67 259.2 160 81.9
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 1.5e-51 206.8 155 64.5
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 9.7e-51 204.1 155 64.5
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 2.2e-50 203.0 164 63.4
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 8.2e-50 201.1 145 66.2
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 1.2e-48 197.2 154 63.6
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 1.4e-46 190.3 154 60.4
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 1.9e-46 189.9 151 64.9
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 1.6e-45 186.8 164 60.4
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 2.1e-45 186.4 154 62.3
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 2.7e-45 186.0 157 60.5
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 4.6e-45 185.3 155 58.7
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 6.1e-45 184.9 158 62.0
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 1.0e-44 184.1 155 58.7
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 5.1e-44 181.8 159 59.7
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 1.1e-43 180.6 155 57.4
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 2.0e-43 179.9 161 56.5
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 2.0e-43 179.9 161 56.5
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 2.0e-43 179.9 159 58.5
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 7.4e-43 177.9 161 55.3
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 7.4e-43 177.9 161 58.4
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 9.7e-43 177.6 159 59.1
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 1.7e-42 176.8 155 60.0
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 3.7e-42 175.6 127 66.1
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 4.8e-42 175.3 159 54.7
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 1.1e-41 174.1 138 61.6
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 1.4e-41 173.7 133 64.7
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 1.4e-41 173.7 138 61.6
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.8e-41 173.3 159 57.9
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 4.1e-41 172.2 152 60.5
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 5.3e-41 171.8 147 60.5
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 1.2e-40 170.6 155 58.7
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 7.7e-40 167.9 158 55.1
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 1.3e-39 167.2 133 60.9
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 2.2e-39 166.4 131 58.8
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 1.9e-38 163.3 163 50.3
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 2.5e-38 162.9 157 59.2
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 3.2e-38 162.5 154 55.8
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 5.5e-38 161.8 162 54.9
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 9.4e-38 161.0 161 55.9
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 9.4e-38 161.0 158 55.1
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 2.7e-37 159.5 164 56.1
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 3.6e-37 159.1 142 59.2
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 1.8e-36 156.8 137 61.3
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 1.8e-36 156.8 137 61.3
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 2.3e-36 156.4 164 50.6
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 2.3e-36 156.4 149 54.4
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 2.3e-36 156.4 161 52.8
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 3.0e-36 156.0 144 58.3
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 8.8e-36 154.5 154 53.2
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 2.0e-35 153.3 142 59.2
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 2.0e-35 153.3 132 59.1
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 5.7e-35 151.8 133 61.7
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 9.7e-35 151.0 164 48.8
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 1.3e-34 150.6 123 61.0
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 2.2e-34 149.8 152 52.6
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 3.7e-34 149.1 140 57.1
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 6.3e-34 148.3 142 54.9
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 6.3e-34 148.3 156 51.3
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 1.8e-33 146.7 127 61.4
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 2.4e-33 146.4 94 73.4
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 4.1e-33 145.6 149 51.7
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 7.0e-33 144.8 136 58.8
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 1.2e-32 144.1 150 52.0
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 2.6e-32 142.9 125 56.8
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 2.2e-31 139.8 151 50.3
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 3.8e-31 139.0 121 57.0
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 3.8e-31 139.0 154 51.3
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 6.5e-31 138.3 151 57.0
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 6.5e-31 138.3 126 57.1
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 1.5e-30 137.1 169 47.9
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 1.5e-30 137.1 128 56.2
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 3.2e-30 136.0 121 57.0
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 4.2e-30 135.6 119 58.0
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 5.5e-30 135.2 122 54.1
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 5.5e-30 135.2 128 52.3
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 7.2e-30 134.8 150 49.3
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 9.4e-30 134.4 113 54.9
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 1.6e-29 133.7 168 47.0
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 4.7e-29 132.1 131 54.2
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 6.1e-29 131.7 151 46.4
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 6.1e-29 131.7 162 47.5
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 1.0e-28 131.0 134 53.0
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 1.4e-28 130.6 131 53.4
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 1.8e-28 130.2 133 52.6
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 1.8e-28 130.2 133 52.6
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 1.8e-28 130.2 131 52.7
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 4.0e-28 129.0 120 55.8
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 8.8e-28 127.9 119 55.5
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 1.1e-27 127.5 99 62.6
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 5.7e-27 125.2 134 51.5
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 5.7e-27 125.2 142 50.0
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 5.7e-27 125.2 121 54.5
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 7.5e-27 124.8 120 55.0
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 9.7e-27 124.4 143 46.2
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 4.8e-26 122.1 142 45.8
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 6.3e-26 121.7 142 50.7
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 6.3e-26 121.7 124 52.4
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 4.1e-25 119.0 85 62.4
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 5.3e-25 118.6 146 48.6
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 1.2e-24 117.5 134 50.7
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 1.6e-24 117.1 143 45.5
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 4.5e-24 115.5 112 54.5
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 2.2e-23 113.2 90 56.7
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 3.8e-23 112.5 135 50.4
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 1.1e-22 110.9 128 44.5
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 9.4e-22 107.8 84 58.3
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 9.4e-22 107.8 107 55.1
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 3.6e-21 105.9 112 53.6
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 1.0e-20 104.4 102 52.0
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 1.4e-20 104.0 86 57.0
HPP92_018957 Vanilla planifolia HOM05D005114 ORTHO05D006301 2.3e-20 103.2 152 38.8
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 3.0e-20 102.8 140 45.7
Zm00001eb188970 Zea mays HOM05D005114 ORTHO05D006301 1.5e-19 100.5 145 41.4
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 7.5e-19 98.2 114 50.0
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 9.8e-19 97.8 151 45.0
Thhalv10023149m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 2.8e-18 96.3 121 47.9
HPP92_017809 Vanilla planifolia HOM05D005114 ORTHO05D006301 3.7e-18 95.9 125 43.2
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 8.3e-18 94.7 118 48.3
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 1.1e-17 94.4 121 45.5
HPP92_019672 Vanilla planifolia HOM05D005114 ORTHO05D006301 1.4e-17 94.0 144 39.6
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 1.8e-17 93.6 118 46.6
BcaB03g16485 Brassica carinata HOM05D005114 ORTHO05D006301 2.4e-17 93.2 119 46.2
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 2.4e-17 93.2 118 47.5
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 2.4e-17 93.2 118 47.5
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 2.4e-17 93.2 118 47.5
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 7.0e-17 91.7 139 43.2
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 1.0e-15 87.8 113 46.9
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 1.5e-14 84.0 142 42.3
Lju1609C0T0 Lonicera japonica HOM05D005114 ORTHO05D006301 4.2e-14 82.4 52 63.5
Sp3g30650 Schrenkiella parvula HOM05D005114 ORTHO05D006301 1.6e-13 80.5 116 43.1
CARHR107410 Cardamine hirsuta HOM05D005114 ORTHO05D006301 3.0e-12 76.3 113 44.2
Gohir.A12G012850 Gossypium hirsutum HOM05D005114 ORTHO05D006301 4.0e-12 75.9 49 67.3
SEGI_06952 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 6.8e-12 75.1 136 34.6
RcHm_v2.0_Chr4g0418711 Rosa chinensis HOM05D005114 ORTHO05D006301 4.9e-10 68.9 64 59.4
Zm00001eb035190 Zea mays HOM05D005114 ORTHO05D006301 6.3e-10 68.6 126 34.1
Dinv11287 Davidia involucrata HOM05D005114 ORTHO05D006301 5.0e-07 58.9 43 58.1
Thhalv10021664m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 5.0e-07 58.9 85 42.4
Dinv13785 Davidia involucrata HOM05D005114 ORTHO05D006301 6.6e-07 58.5 51 49.0


User provided reference genes

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