Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G010040 Cucumis sativus L. HOM05D000001 ORTHO05D031296 3.2e-74 281.6 133 100.0
MELO3C035015.2 Cucumis melo HOM05D000001 ORTHO05D000003 1.6e-36 156.4 79 94.9
ClCG02G010810 Citrullus lanatus HOM05D000001 ORTHO05D000003 2.2e-30 136.0 79 83.5
Sed0006509 Sechium edule HOM05D000001 ORTHO05D000003 3.4e-23 112.1 65 80.0
CiPaw.05G094400 Carya illinoinensis HOM05D000001 ORTHO05D000003 1.3e-19 100.1 79 58.2
Haze_01962 Corylus avellana HOM05D000001 ORTHO05D000003 3.8e-19 98.6 62 71.0
Cfa004787 Carpinus fangiana HOM05D000001 ORTHO05D000003 5.0e-19 98.2 62 71.0
Dinv14182 Davidia involucrata HOM05D000001 ORTHO05D000003 6.6e-19 97.8 62 69.4
QL11p056630 Quercus lobata HOM05D000001 ORTHO05D000003 2.5e-18 95.9 62 72.6
MD05G1142000 Malus domestica HOM05D000001 ORTHO05D000003 3.3e-18 95.5 71 62.0
Prupe.8G181700 Prunus persica HOM05D000001 ORTHO05D000003 3.3e-18 95.5 71 62.0
CSS0021477 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 7.2e-18 94.4 79 57.0
Manes.15G113900 Manihot esculenta HOM05D000001 ORTHO05D000003 9.5e-18 94.0 59 69.5
Duzib132G0574 Durio zibethinus HOM05D000001 ORTHO05D000003 2.8e-17 92.4 59 71.2
MD05G1142900 Malus domestica HOM05D000001 ORTHO05D000003 2.8e-17 92.4 71 60.6
Ciclev10028001m.g Citrus clementina HOM05D000001 ORTHO05D000003 6.1e-17 91.3 62 64.5
Rhsim11G0198300 Rhododendron simsii HOM05D000001 ORTHO05D000003 6.1e-17 91.3 58 65.5
TWI79G0516 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 6.1e-17 91.3 62 69.4
FAN15G1134 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.0e-17 90.9 59 69.5
FAN27G2344 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.0e-17 90.9 59 69.5
RcHm_v2.0_Chr6g0281171 Rosa chinensis HOM05D000001 ORTHO05D000003 8.0e-17 90.9 59 71.2
Lj5E171T2 Lonicera japonica HOM05D000001 ORTHO05D000003 1.0e-16 90.5 62 58.1
Peaxi162Scf00169g00086 Petunia axillaris HOM05D000001 ORTHO05D000003 1.0e-16 90.5 64 57.8
PGR058G0002 Punica granatum HOM05D000001 ORTHO05D000003 1.0e-16 90.5 62 66.1
FAN24G2985 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.4e-16 90.1 59 67.8
Lsat_1_v5_gn_8_121220 Lactuca sativa HOM05D000001 ORTHO05D000003 2.3e-16 89.4 70 55.7
Potri.004G208000 Populus trichocarpa HOM05D000001 ORTHO05D000003 2.3e-16 89.4 59 66.1
FvH4_2g16980 Fragaria vesca HOM05D000001 ORTHO05D000003 3.0e-16 89.0 59 66.1
vmacro02682 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 3.0e-16 89.0 75 54.7
Gohir.D04G151800 Gossypium hirsutum HOM05D000001 ORTHO05D000003 5.2e-16 88.2 59 66.1
Gorai.012G138600 Gossypium raimondii HOM05D000001 ORTHO05D000003 5.2e-16 88.2 59 66.1
Nitab4.5_0001961g0100 Nicotiana tabacum HOM05D000001 ORTHO05D000003 6.8e-16 87.8 64 56.2
Nitab4.5_0005160g0080 Nicotiana tabacum HOM05D000001 ORTHO05D000003 6.8e-16 87.8 64 56.2
CANSAT25G3318 Cannabis sativa HOM05D000001 ORTHO05D000003 8.9e-16 87.4 64 62.5
PGSC0003DMG400029268 Solanum tuberosum HOM05D000001 ORTHO05D000003 1.2e-15 87.0 63 58.7
Gohir.A04G111500 Gossypium hirsutum HOM05D000001 ORTHO05D000003 1.5e-15 86.7 59 64.4
Thecc.02G147600 Theobroma cacao HOM05D000001 ORTHO05D000003 1.5e-15 86.7 75 57.3
Actinidia20582 Actinidia chinensis HOM05D000001 ORTHO05D000003 2.0e-15 86.3 62 61.3
Sabra04G0139900 Salix brachista HOM05D000001 ORTHO05D000003 2.0e-15 86.3 86 48.8
CAN.G566.36 Capsicum annuum HOM05D000001 ORTHO05D000003 2.6e-15 85.9 63 55.6
GSVIVG01023860001 Vitis vinifera HOM05D000001 ORTHO05D000003 2.6e-15 85.9 61 65.6
Nn1g04383 Nelumbo nucifera HOM05D000001 ORTHO05D000003 4.4e-15 85.1 62 61.3
Solyc12g096680.1 Solanum lycopersicum HOM05D000001 ORTHO05D000003 4.4e-15 85.1 63 57.1
Sopen12g032510 Solanum pennellii HOM05D000001 ORTHO05D000003 4.4e-15 85.1 63 57.1
THA.LOC104811463 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 5.7e-15 84.7 58 63.8
VMungo0720G1545 Vigna mungo HOM05D000001 ORTHO05D000003 2.8e-14 82.4 66 59.1
MSTRG.4437 Avicennia marina HOM05D000001 ORTHO05D000003 4.9e-14 81.6 59 54.2
HanXRQChr16g0515201 Helianthus annuus HOM05D000001 ORTHO05D000003 4.9e-14 81.6 57 59.6
Migut.D01809 Erythranthe guttata HOM05D000001 ORTHO05D000003 1.4e-13 80.1 68 48.5
Lalb_Chr07g0189111 Lupinus albus HOM05D000001 ORTHO05D000003 7.0e-13 77.8 59 55.9
CARHR146270 Cardamine hirsuta HOM05D000001 ORTHO05D000003 1.2e-12 77.0 66 56.1
PSO675G0134 Papaver somniferum HOM05D000001 ORTHO05D000003 1.6e-12 76.6 74 44.6
C07p34260 Brassica napus HOM05D000001 ORTHO05D000003 2.0e-12 76.3 73 46.6
BolC7t43955H Brassica oleracea HOM05D000001 ORTHO05D000003 2.0e-12 76.3 73 46.6
Sp2g14680 Schrenkiella parvula HOM05D000001 ORTHO05D000003 2.0e-12 76.3 67 50.7
Aqoxy6G01537 Aquilegia oxysepala HOM05D000001 ORTHO05D031296 2.7e-12 75.9 53 60.4
Sc14g0003000 Simmondsia chinensis HOM05D000001 ORTHO05D000003 3.5e-12 75.5 71 52.1
Phvul.002G199400 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 4.5e-12 75.1 50 66.0
SHI05837 Sapria himalayana HOM05D000001 ORTHO05D000003 4.5e-12 75.1 62 56.5
AT2G03880 Arabidopsis thaliana HOM05D000001 ORTHO05D000003 5.9e-12 74.7 67 50.7
A06p42820 Brassica napus HOM05D000001 ORTHO05D000003 5.9e-12 74.7 73 45.2
BraA06t27194Z Brassica rapa HOM05D000001 ORTHO05D000003 5.9e-12 74.7 73 45.2
Lj4g0013919 Lotus japonicus HOM05D000001 ORTHO05D000003 1.0e-11 73.9 50 62.0
Glyma.08G080267 Glycine max HOM05D000001 ORTHO05D031296 1.7e-11 73.2 69 50.7
Thhalv10005541m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 2.3e-11 72.8 67 49.3
EL10Ac9g21554 Beta vulgaris HOM05D000001 ORTHO05D000003 2.9e-11 72.4 64 45.3
Aa31LG2G1580 Aethionema arabicum HOM05D000001 ORTHO05D000003 1.1e-10 70.5 58 53.4
Ca_18300_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 1.5e-10 70.1 50 60.0
Glyma.05G125500 Glycine max HOM05D000001 ORTHO05D000003 5.6e-10 68.2 50 58.0
Psat7g093040 Pisum sativum HOM05D000001 ORTHO05D000003 9.5e-10 67.4 68 47.1
Medtr4g094502 Medicago truncatula HOM05D000001 ORTHO05D000003 3.6e-09 65.5 50 56.0
TPR.G30381 Trifolium pratense HOM05D000001 ORTHO05D000003 4.7e-09 65.1 50 54.0
Cc09_g10710 Coffea canephora HOM05D000001 ORTHO05D000003 6.1e-09 64.7 58 43.1
MD03G1248800 Malus domestica HOM05D000001 ORTHO05D048618 6.4e-06 54.7 38 63.2


User provided reference genes

Program Settings