Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 7.0e-187 657.1 332 100.0
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 1.8e-182 642.5 332 97.6
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 2.3e-177 625.5 328 94.8
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 5.6e-168 594.3 329 88.8
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 4.6e-146 521.5 322 78.0
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 1.1e-142 510.4 322 75.8
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 2.0e-141 506.1 324 77.2
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 5.8e-141 504.6 323 75.9
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 7.6e-141 504.2 324 74.1
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 1.7e-140 503.1 330 73.6
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 2.9e-140 502.3 324 77.2
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 2.9e-140 502.3 322 73.9
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 4.2e-139 498.4 321 73.2
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 9.3e-139 497.3 324 75.6
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 1.2e-138 496.9 322 74.2
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 6.0e-138 494.6 321 73.2
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 1.0e-137 493.8 326 73.6
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 1.0e-137 493.8 323 74.0
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 2.3e-137 492.7 322 73.3
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 3.0e-137 492.3 325 74.5
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 2.5e-136 489.2 324 73.5
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 3.3e-136 488.8 324 74.4
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 4.3e-136 488.4 323 72.4
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 7.3e-136 487.6 326 74.8
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 7.3e-136 487.6 321 71.0
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 1.4e-134 483.4 322 73.0
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 1.4e-134 483.4 325 71.4
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 1.4e-134 483.4 323 72.8
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.8e-134 483.0 321 70.1
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 5.3e-134 481.5 321 70.4
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 5.3e-134 481.5 323 71.5
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 1.2e-133 480.3 321 69.2
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 2.6e-133 479.2 324 72.8
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 4.5e-133 478.4 323 72.1
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 1.7e-132 476.5 322 70.2
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 2.9e-132 475.7 322 70.8
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 4.9e-132 474.9 322 71.7
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 6.4e-132 474.6 324 71.0
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 1.4e-131 473.4 322 69.9
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 2.4e-131 472.6 323 70.6
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 2.4e-131 472.6 325 71.1
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.4e-131 472.6 325 71.1
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.4e-131 472.6 325 70.8
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 4.2e-131 471.9 370 65.9
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 5.4e-131 471.5 322 69.6
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 5.4e-131 471.5 322 71.7
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 2.1e-130 469.5 317 71.3
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 4.6e-130 468.4 326 68.7
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 6.0e-130 468.0 322 69.6
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 6.0e-130 468.0 322 71.7
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 1.8e-129 466.5 324 70.7
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 2.3e-129 466.1 326 69.0
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 3.0e-129 465.7 323 70.6
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 3.9e-129 465.3 324 69.4
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 3.9e-129 465.3 324 69.8
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 6.7e-129 464.5 322 68.9
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.1e-128 463.8 321 71.7
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 1.1e-128 463.8 326 68.1
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 1.1e-128 463.8 326 68.4
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.5e-128 463.4 326 69.3
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 5.6e-128 461.5 322 68.3
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 9.6e-128 460.7 319 67.7
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 9.6e-128 460.7 319 68.0
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.1e-127 459.5 327 68.8
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 3.7e-127 458.8 323 69.7
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 4.8e-127 458.4 320 70.0
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 1.1e-126 457.2 322 67.7
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 9.0e-126 454.1 322 66.8
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 9.0e-126 454.1 329 68.7
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 2.0e-125 453.0 324 70.4
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 2.6e-125 452.6 321 67.6
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 7.6e-125 451.1 319 66.8
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 1.3e-124 450.3 324 67.3
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.4e-123 446.8 329 64.7
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 1.9e-123 446.4 321 67.3
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 5.5e-123 444.9 322 65.8
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 3.5e-122 442.2 322 65.2
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 6.0e-122 441.4 323 67.8
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 7.9e-122 441.0 327 66.1
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 6.7e-121 438.0 323 67.2
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 1.1e-120 437.2 326 64.7
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 1.5e-120 436.8 326 64.7
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 2.5e-120 436.0 307 67.4
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 9.6e-120 434.1 326 64.1
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 2.1e-119 433.0 323 65.0
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 4.8e-119 431.8 326 64.7
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 8.2e-119 431.0 326 62.6
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 1.4e-118 430.3 326 62.6
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 1.8e-118 429.9 326 62.9
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 5.3e-118 428.3 326 62.9
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 9.0e-118 427.6 302 66.9
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 1.5e-117 426.8 318 66.4
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 7.6e-117 424.5 264 77.3
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 1.0e-116 424.1 323 61.9
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 1.3e-116 423.7 301 66.4
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 1.4e-115 420.2 323 61.6
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 5.5e-115 418.3 324 61.7
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 7.1e-115 417.9 320 64.7
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 9.3e-115 417.5 324 61.1
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 1.2e-114 417.2 326 61.7
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 4.6e-114 415.2 327 63.0
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 7.9e-114 414.5 325 61.8
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 1.8e-113 413.3 324 60.8
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 8.7e-113 411.0 277 72.9
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 2.2e-111 406.4 286 69.2
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 2.4e-110 402.9 294 67.7
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 6.9e-110 401.4 323 61.0
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 1.9e-107 393.3 257 75.1
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 4.2e-107 392.1 372 55.4
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 4.6e-106 388.7 415 53.5
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.8e-103 379.4 329 57.4
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 2.8e-103 379.4 541 42.5
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 4.8e-103 378.6 329 57.1
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 4.1e-102 375.6 324 57.1
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 3.8e-100 369.0 322 59.9
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.9e-99 366.7 323 59.4
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 7.9e-98 361.3 324 57.7
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 1.4e-97 360.5 287 62.0
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 1.4e-97 360.5 685 36.1
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 6.5e-92 341.7 272 63.6
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 8.5e-92 341.3 220 72.7
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 2.1e-90 336.7 263 61.2
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 2.8e-87 326.2 301 52.8
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 7.0e-86 321.6 301 51.8
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 2.2e-84 316.6 306 50.3
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 3.8e-84 315.8 232 66.4
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.4e-81 307.4 202 75.2
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 1.5e-80 303.9 256 59.0
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 1.2e-74 284.3 302 47.4
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 1.0e-68 264.6 177 73.4
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 2.3e-68 263.5 221 58.4
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 1.4e-54 217.6 298 38.9
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 2.6e-48 196.8 189 50.3
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 1.2e-32 144.8 96 74.0
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 3.4e-32 143.3 99 67.7
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.1e-30 138.3 93 65.6
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 3.2e-30 136.7 93 65.6
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 6.0e-29 132.5 99 64.6
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 3.9e-28 129.8 119 59.7
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 8.7e-28 128.6 75 73.3
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 2.8e-26 123.6 329 28.0
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 3.6e-26 123.2 86 73.3
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 9.6e-19 98.6 81 55.6
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 5.3e-17 92.8 88 52.3
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 4.2e-14 83.2 96 55.2
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 1.2e-13 81.6 79 55.7
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 9.9e-08 62.0 75 49.3
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 9.9e-08 62.0 75 49.3
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 1.3e-07 61.6 75 49.3
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 1.7e-07 61.2 71 42.3
RcHm_v2.0_Chr7g0225301 Rosa chinensis HOM05D004699 ORTHO05D005668 1.1e-06 58.5 50 54.0
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.9e-06 57.8 43 62.8


User provided reference genes

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