Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G008950 Cucumis sativus L. HOM05D004242 ORTHO05D004349 3.8e-187 658.3 398 100.0
MELO3C022249.2 Cucumis melo HOM05D004242 ORTHO05D004349 1.2e-153 547.0 399 84.0
ClCG06G002780 Citrullus lanatus HOM05D004242 ORTHO05D004349 2.2e-118 429.9 404 65.1
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 4.0e-64 249.6 412 46.8
Sed0006480 Sechium edule HOM05D004242 ORTHO05D004349 4.2e-61 239.6 455 46.2
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 3.5e-23 113.6 253 37.5
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 7.2e-21 105.9 220 40.0
Manes.05G019100 Manihot esculenta HOM05D004242 ORTHO05D004349 3.6e-20 103.6 386 33.2
Thecc.01G336900 Theobroma cacao HOM05D004242 ORTHO05D004349 6.1e-20 102.8 232 37.5
Gorai.007G111100 Gossypium raimondii HOM05D004242 ORTHO05D004349 1.4e-19 101.7 217 39.2
Gohir.D11G103800 Gossypium hirsutum HOM05D004242 ORTHO05D004349 4.0e-19 100.1 217 39.2
Peaxi162Scf00014g00294 Petunia axillaris HOM05D004242 ORTHO05D004349 4.0e-19 100.1 241 36.1
Actinidia25370 Actinidia chinensis HOM05D004242 ORTHO05D004349 5.2e-19 99.8 248 35.1
Duzib133G0806 Durio zibethinus HOM05D004242 ORTHO05D004349 5.2e-19 99.8 224 38.4
Duzib138G0794 Durio zibethinus HOM05D004242 ORTHO05D004349 8.8e-19 99.0 268 34.7
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 1.1e-18 98.6 225 35.6
MSTRG.20915 Avicennia marina HOM05D004242 ORTHO05D004349 2.2e-17 94.4 244 34.4
FvH4_7g17260 Fragaria vesca HOM05D004242 ORTHO05D004349 2.2e-17 94.4 263 35.4
FAN06G4791 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.2e-17 94.4 263 35.4
FAN06G2582 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.8e-17 94.0 263 35.4
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 2.8e-17 94.0 243 37.9
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 2.8e-17 94.0 395 32.7
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 4.8e-17 93.2 243 33.7
Ciclev10019915m.g Citrus clementina HOM05D004242 ORTHO05D004349 6.3e-17 92.8 260 36.5
FAN03G1939 Fragaria x ananassa HOM05D004242 ORTHO05D004349 8.2e-17 92.4 271 35.1
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 1.1e-16 92.0 260 33.8
Prupe.2G193900 Prunus persica HOM05D004242 ORTHO05D004349 1.1e-16 92.0 277 32.9
Manes.01G267100 Manihot esculenta HOM05D004242 ORTHO05D004349 1.4e-16 91.7 263 32.7
Lj1g0015234 Lotus japonicus HOM05D004242 ORTHO05D004349 3.1e-16 90.5 254 32.3
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 4.1e-16 90.1 243 35.4
FAN01G2496 Fragaria x ananassa HOM05D004242 ORTHO05D004349 5.3e-16 89.7 271 34.7
Phvul.006G115800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 7.0e-16 89.4 396 32.3
FAN10G0542 Fragaria x ananassa HOM05D004242 ORTHO05D004349 9.1e-16 89.0 272 33.1
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 1.2e-15 88.6 255 32.9
PGSC0003DMG400007374 Solanum tuberosum HOM05D004242 ORTHO05D004349 1.2e-15 88.6 245 38.4
FAN22G2040 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.0e-15 87.8 271 33.2
Nitab4.5_0005697g0010 Nicotiana tabacum HOM05D004242 ORTHO05D004349 2.7e-15 87.4 249 36.1
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 3.5e-15 87.0 242 31.8
Gohir.A07G135500 Gossypium hirsutum HOM05D004242 ORTHO05D004349 4.5e-15 86.7 222 36.0
Solyc08g067370.1 Solanum lycopersicum HOM05D004242 ORTHO05D004349 4.5e-15 86.7 438 30.1
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 4.5e-15 86.7 264 33.7
FAN12G0333 Fragaria x ananassa HOM05D004242 ORTHO05D004349 5.9e-15 86.3 283 35.3
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 5.9e-15 86.3 389 29.3
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 5.9e-15 86.3 251 34.3
SGA_v2.0_scaffold98G29435 Striga asiatica HOM05D004242 ORTHO05D004349 5.9e-15 86.3 216 37.0
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 1.0e-14 85.5 247 33.2
FAN17G2081 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.3e-14 85.1 340 31.2
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 1.3e-14 85.1 249 35.3
MSTRG.28279 Avicennia marina HOM05D004242 ORTHO05D004349 5.0e-14 83.2 265 30.9
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 5.0e-14 83.2 265 34.3
FvH4_4g01200 Fragaria vesca HOM05D004242 ORTHO05D004349 5.0e-14 83.2 283 35.0
Gohir.D07G140400 Gossypium hirsutum HOM05D004242 ORTHO05D004349 5.0e-14 83.2 229 34.1
FAN10G1700 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.1e-13 82.0 270 32.2
Atru.chr5.733 Acer truncatum HOM05D004242 ORTHO05D004349 1.9e-13 81.3 282 32.3
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 1.9e-13 81.3 216 30.1
CiPaw.02G042800 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.9e-13 81.3 376 29.3
Lsat_1_v5_gn_3_140940 Lactuca sativa HOM05D004242 ORTHO05D004349 1.9e-13 81.3 210 34.3
RcHm_v2.0_Chr1g0360631 Rosa chinensis HOM05D004242 ORTHO05D004349 1.9e-13 81.3 281 32.7
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 2.5e-13 80.9 105 45.7
Gorai.001G152400 Gossypium raimondii HOM05D004242 ORTHO05D004349 3.2e-13 80.5 229 34.1
Lsat_1_v5_gn_8_20301 Lactuca sativa HOM05D004242 ORTHO05D004349 4.2e-13 80.1 215 33.5
TAR339G0002 Trochodendron aralioides HOM05D004242 ORTHO05D004349 4.2e-13 80.1 426 32.9
TWI14G0118 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 5.5e-13 79.7 203 34.0
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 7.2e-13 79.3 254 31.5
EL10Ac1g00218 Beta vulgaris HOM05D004242 ORTHO05D004349 9.4e-13 79.0 194 33.5
DCAR_002987 Daucus carota HOM05D004242 ORTHO05D004349 9.4e-13 79.0 239 34.3
CSS0005133 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 3.6e-12 77.0 221 32.6
CAN.G211.7 Capsicum annuum HOM05D004242 ORTHO05D004349 3.6e-12 77.0 437 29.5
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 8.0e-12 75.9 244 29.5
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 8.0e-12 75.9 228 31.1
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 8.0e-12 75.9 396 26.5
RcHm_v2.0_Chr3g0484701 Rosa chinensis HOM05D004242 ORTHO05D004349 1.0e-11 75.5 279 32.3
Cfa003761 Carpinus fangiana HOM05D004242 ORTHO05D004349 2.3e-11 74.3 402 34.3
Haze_15699 Corylus avellana HOM05D004242 ORTHO05D004349 2.3e-11 74.3 446 32.5
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 3.0e-11 73.9 199 31.7
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 4.0e-11 73.6 228 34.2
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 6.8e-11 72.8 405 28.4
CiPaw.02G043000 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.5e-10 71.6 105 41.9
unitig_8.g4995 Utricularia gibba HOM05D004242 ORTHO05D004349 2.0e-10 71.2 241 30.7
CDE02G1230 Ceratophyllum demersum HOM05D004242 ORTHO05D004349 3.4e-10 70.5 149 34.9
AT2G46630 Arabidopsis thaliana HOM05D004242 ORTHO05D004349 4.4e-10 70.1 137 40.9
Psat3g001320 Pisum sativum HOM05D004242 ORTHO05D004349 4.4e-10 70.1 403 31.0
Sed0013414 Sechium edule HOM05D004242 ORTHO05D004349 9.8e-10 68.9 125 34.4
CARHR141970 Cardamine hirsuta HOM05D004242 ORTHO05D004349 1.3e-09 68.6 116 39.7
Lalb_Chr04g0261391 Lupinus albus HOM05D004242 ORTHO05D004349 1.7e-09 68.2 114 36.8
Nitab4.5_0000307g0130 Nicotiana tabacum HOM05D019980 ORTHO05D022204 4.8e-09 66.6 142 35.2
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 4.8e-09 66.6 251 29.1
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 1.1e-08 65.5 215 30.7
Aqoxy2G02545 Aquilegia oxysepala HOM05D004242 ORTHO05D004349 2.4e-08 64.3 171 32.2
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 2.4e-08 64.3 115 36.5
CSS0009998 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 4.1e-08 63.5 441 32.7
Carub.0004s2934 Capsella rubella HOM05D004242 ORTHO05D004349 5.4e-08 63.2 119 37.0
Nitab4.5_0002527g0010 Nicotiana tabacum HOM05D019980 ORTHO05D022204 7.0e-08 62.8 140 32.9
CSS0040523 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 9.1e-08 62.4 218 29.8
Phvul.010G116800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 9.1e-08 62.4 137 35.0
ClCG05G000600 Citrullus lanatus HOM05D004242 ORTHO05D004349 1.2e-07 62.0 95 40.0
MELO3C005995.2 Cucumis melo HOM05D004242 ORTHO05D004349 1.2e-07 62.0 111 34.2
CsaV3_3G007790 Cucumis sativus L. HOM05D004242 ORTHO05D004349 1.2e-07 62.0 112 33.9
GSVIVG01027399001 Vitis vinifera HOM05D004242 ORTHO05D004349 1.2e-07 62.0 242 30.6
BraA05t19116Z Brassica rapa HOM05D004242 ORTHO05D004349 2.0e-07 61.2 259 30.1
Dinv32623 Davidia involucrata HOM05D004242 ORTHO05D004349 2.0e-07 61.2 117 35.9
Lalb_Chr08g0245891 Lupinus albus HOM05D006278 ORTHO05D007526 2.0e-07 61.2 118 32.2
Sed0012028 Sechium edule HOM05D004242 ORTHO05D004349 2.0e-07 61.2 212 29.2
AUR62004535 Chenopodium quinoa HOM05D004242 ORTHO05D004349 3.5e-07 60.5 238 30.3
PGSC0003DMG400046434 Solanum tuberosum HOM05D019980 ORTHO05D022204 3.5e-07 60.5 130 33.8
ECA236G3302 Erigeron canadensis HOM05D004242 ORTHO05D004349 4.5e-07 60.1 221 30.8
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 4.5e-07 60.1 102 35.3
Dinv39433 Davidia involucrata HOM05D006278 ORTHO05D007526 5.9e-07 59.7 100 34.0
Lj4P787T11 Lonicera japonica HOM05D006278 ORTHO05D007526 7.7e-07 59.3 101 34.7
Aa31LG1G28030 Aethionema arabicum HOM05D004242 ORTHO05D004349 1.0e-06 58.9 247 28.3
HPP92_004792 Vanilla planifolia HOM05D006278 ORTHO05D007526 1.0e-06 58.9 117 32.5
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.3e-06 58.5 408 26.5
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 1.3e-06 58.5 238 30.3
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 1.3e-06 58.5 254 28.3
SGA_v2.0_scaffold201G41409 Striga asiatica HOM05D006278 ORTHO05D007526 1.3e-06 58.5 110 31.8
BcaC02g07046 Brassica carinata HOM05D004242 ORTHO05D004349 1.7e-06 58.2 142 33.8
BcaC07g42602 Brassica carinata HOM05D004242 ORTHO05D004349 1.7e-06 58.2 100 39.0
CsaV3_3G007800 Cucumis sativus L. HOM05D004242 ORTHO05D004349 1.7e-06 58.2 297 26.9
Lalb_Chr10g0100731 Lupinus albus HOM05D004242 ORTHO05D004349 2.2e-06 57.8 112 36.6
Nn2g14857 Nelumbo nucifera HOM05D006278 ORTHO05D007526 2.2e-06 57.8 113 38.1
PSO761G0055 Papaver somniferum HOM05D004242 ORTHO05D004349 2.2e-06 57.8 251 30.3
Sed0025990 Sechium edule HOM05D004242 ORTHO05D004349 2.2e-06 57.8 249 27.3
ATR0796G195 Amborella trichopoda HOM05D004242 ORTHO05D004349 2.9e-06 57.4 129 35.7
A05p01160 Brassica napus HOM05D004242 ORTHO05D004349 2.9e-06 57.4 258 28.3
BolC4t21785H Brassica oleracea HOM05D004242 ORTHO05D004349 2.9e-06 57.4 251 27.9
ClCG05G000580 Citrullus lanatus HOM05D004242 ORTHO05D004349 2.9e-06 57.4 128 33.6
Peaxi162Scf00303g00043 Petunia axillaris HOM05D006278 ORTHO05D007526 2.9e-06 57.4 117 28.2
HPP92_023037 Vanilla planifolia HOM05D004242 ORTHO05D004349 2.9e-06 57.4 126 34.1
BcaC02g12660 Brassica carinata HOM05D004242 ORTHO05D004349 3.8e-06 57.0 251 28.3
C04p01320 Brassica napus HOM05D004242 ORTHO05D004349 3.8e-06 57.0 251 28.3
Medtr8g027290 Medicago truncatula HOM05D004242 ORTHO05D004349 3.8e-06 57.0 133 30.8
Sp4g28680 Schrenkiella parvula HOM05D004242 ORTHO05D004349 5.0e-06 56.6 141 33.3
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 5.0e-06 56.6 112 33.9
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 6.5e-06 56.2 101 34.7
Nitab4.5_0002224g0110 Nicotiana tabacum HOM05D006278 ORTHO05D007526 6.5e-06 56.2 110 30.0
Oeu049934.1 Olea europaea HOM05D006278 ORTHO05D007526 6.5e-06 56.2 118 28.8
Aqoxy6G01136 Aquilegia oxysepala HOM05D006278 ORTHO05D007526 8.5e-06 55.8 107 33.6
A09p53910 Brassica napus HOM05D004242 ORTHO05D004349 8.5e-06 55.8 139 33.1
CSS0025999 Camellia sinensis var. sinensis HOM05D006278 ORTHO05D007526 8.5e-06 55.8 106 33.0
ClCG08G014920 Citrullus lanatus HOM05D006278 ORTHO05D007526 8.5e-06 55.8 121 32.2
Lj8P558T23 Lonicera japonica HOM05D012621 ORTHO05D004349 8.5e-06 55.8 97 35.1
Oeu029831.2 Olea europaea HOM05D006278 ORTHO05D007526 8.5e-06 55.8 118 28.0
GSVIVG01027401001 Vitis vinifera HOM05D004242 ORTHO05D004349 8.5e-06 55.8 226 26.5


User provided reference genes

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