Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G008500 Cucumis sativus L. HOM05D007265 ORTHO05D009118 2.4e-27 124.8 64 100.0
MELO3C022263.2 Cucumis melo HOM05D007265 ORTHO05D009118 2.3e-25 118.2 64 93.8
Cc02_g39560 Coffea canephora HOM05D007265 ORTHO05D009118 1.1e-24 115.9 64 92.2
Sed0002056 Sechium edule HOM05D007265 ORTHO05D009118 8.0e-23 109.8 64 87.5
Glyma.03G258500 Glycine max HOM05D007265 ORTHO05D009118 1.4e-22 109.0 64 85.9
Glyma.19G257100 Glycine max HOM05D007265 ORTHO05D009118 1.4e-22 109.0 64 85.9
Hma1.2p1_0390F.1_g142620 Hydrangea macrophylla HOM05D007265 ORTHO05D009118 1.8e-22 108.6 63 84.1
Phvul.006G114500 Phaseolus vulgaris HOM05D007265 ORTHO05D009118 1.8e-22 108.6 64 85.9
Nn1g00287 Nelumbo nucifera HOM05D007265 ORTHO05D009118 3.0e-22 107.8 63 84.1
Nitab4.5_0003865g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 4.0e-22 107.5 63 84.1
MD01G1083600 Malus domestica HOM05D007265 ORTHO05D009118 5.2e-22 107.1 64 84.4
MD07G1152300 Malus domestica HOM05D007265 ORTHO05D009118 5.2e-22 107.1 64 84.4
HanXRQChr03g0093001 Helianthus annuus HOM05D007265 ORTHO05D009118 6.8e-22 106.7 64 81.2
Lj7E499T0 Lonicera japonica HOM05D007265 ORTHO05D009118 6.8e-22 106.7 63 81.0
Oeu008708.1 Olea europaea HOM05D007265 ORTHO05D009118 6.8e-22 106.7 63 81.0
ClCG06G002640 Citrullus lanatus HOM05D007265 ORTHO05D009118 8.9e-22 106.3 56 92.9
Prupe.2G190600 Prunus persica HOM05D007265 ORTHO05D009118 1.2e-21 105.9 64 84.4
HanXRQChr13g0423241 Helianthus annuus HOM05D007265 ORTHO05D009118 1.5e-21 105.5 63 81.0
Nitab4.5_0000258g0270 Nicotiana tabacum HOM05D007265 ORTHO05D009118 1.5e-21 105.5 63 82.5
CiPaw.01G077600 Carya illinoinensis HOM05D007265 ORTHO05D009118 2.0e-21 105.1 64 82.8
CSS0038215 Camellia sinensis var. sinensis HOM05D007265 ORTHO05D009118 2.6e-21 104.8 63 82.5
Lj1g0009143 Lotus japonicus HOM05D007265 ORTHO05D009118 4.4e-21 104.0 64 81.2
PGR042G1917 Punica granatum HOM05D007265 ORTHO05D009118 4.4e-21 104.0 63 82.5
TAR374G1528 Trochodendron aralioides HOM05D007265 ORTHO05D009118 4.4e-21 104.0 60 86.7
Atru.chr5.686 Acer truncatum HOM05D007265 ORTHO05D009118 5.7e-21 103.6 64 78.1
Medtr7g117700 Medicago truncatula HOM05D007265 ORTHO05D009118 5.7e-21 103.6 64 79.7
GSVIVG01027169001 Vitis vinifera HOM05D007265 ORTHO05D009118 5.7e-21 103.6 63 81.0
Nitab4.5_0001763g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 7.5e-21 103.2 63 82.5
ATR0602G127 Amborella trichopoda HOM05D007265 ORTHO05D009118 9.8e-21 102.8 63 82.5
DCAR_005402 Daucus carota HOM05D007265 ORTHO05D009118 9.8e-21 102.8 63 79.4
PSO063G4371 Papaver somniferum HOM05D007265 ORTHO05D009118 9.8e-21 102.8 62 79.0
Duzib138G0325 Durio zibethinus HOM05D007265 ORTHO05D009118 1.3e-20 102.4 63 82.5
PSO170G4391 Papaver somniferum HOM05D007265 ORTHO05D009118 1.7e-20 102.1 62 79.0
AT2G46540 Arabidopsis thaliana HOM05D007265 ORTHO05D009118 2.9e-20 101.3 63 79.4
BcaC02g12671 Brassica carinata HOM05D007265 ORTHO05D009118 2.9e-20 101.3 63 79.4
BcaC02g12679 Brassica carinata HOM05D007265 ORTHO05D009118 2.9e-20 101.3 63 79.4
C04p01380 Brassica napus HOM05D007265 ORTHO05D009118 2.9e-20 101.3 63 79.4
BolC4t21791H Brassica oleracea HOM05D007265 ORTHO05D009118 2.9e-20 101.3 63 79.4
BraA05t19124Z Brassica rapa HOM05D007265 ORTHO05D009118 2.9e-20 101.3 63 79.4
Carub.0004s2926 Capsella rubella HOM05D007265 ORTHO05D009118 2.9e-20 101.3 63 79.4
CAN.G1415.20 Capsicum annuum HOM05D007265 ORTHO05D009118 2.9e-20 101.3 63 81.0
Sp4g28590 Schrenkiella parvula HOM05D007265 ORTHO05D009118 2.9e-20 101.3 63 79.4
AL4G45970 Arabidopsis lyrata HOM05D007265 ORTHO05D009118 3.7e-20 100.9 63 77.8
arahy.Tifrunner.gnm1.ann1.PH1UFL Arachis hypogaea HOM05D007265 ORTHO05D009118 3.7e-20 100.9 60 85.0
Ca_09518_v3 Cicer arietinum L. HOM05D007265 ORTHO05D009118 3.7e-20 100.9 64 76.6
Ciclev10023834m.g Citrus clementina HOM05D007265 ORTHO05D009118 4.9e-20 100.5 63 77.8
Duzib133G0073 Durio zibethinus HOM05D007265 ORTHO05D009118 4.9e-20 100.5 63 81.0
PGSC0003DMG400000233 Solanum tuberosum HOM05D007265 ORTHO05D009118 6.4e-20 100.1 63 81.0
arahy.Tifrunner.gnm1.ann1.4N8QKH Arachis hypogaea HOM05D007265 ORTHO05D009118 8.3e-20 99.8 61 83.6
Gohir.A11G097900 Gossypium hirsutum HOM05D007265 ORTHO05D009118 1.1e-19 99.4 63 79.4
Gohir.D11G102600 Gossypium hirsutum HOM05D007265 ORTHO05D009118 1.1e-19 99.4 63 79.4
Gohir.D12G116700 Gossypium hirsutum HOM05D007265 ORTHO05D009118 1.1e-19 99.4 63 79.4
DCAR_025264 Daucus carota HOM05D007265 ORTHO05D009118 1.4e-19 99.0 63 77.8
Thecc.01G340400 Theobroma cacao HOM05D007265 ORTHO05D009118 1.4e-19 99.0 63 79.4
THA.LOC104802081 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 1.8e-19 98.6 63 73.0
Lsat_1_v5_gn_3_126500 Lactuca sativa HOM05D007265 ORTHO05D009118 3.2e-19 97.8 57 82.5
THA.LOC104817372 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 3.2e-19 97.8 63 73.0
Migut.N01534 Erythranthe guttata HOM05D007265 ORTHO05D009118 4.1e-19 97.4 63 76.2
CARHR141880 Cardamine hirsuta HOM05D007265 ORTHO05D009118 5.4e-19 97.1 63 76.2
Sabra02G0140200 Salix brachista HOM05D007265 ORTHO05D009118 5.4e-19 97.1 65 75.4
Solyc01g096090.4 Solanum lycopersicum HOM05D007265 ORTHO05D009118 5.4e-19 97.1 63 79.4
Sopen01g039810 Solanum pennellii HOM05D007265 ORTHO05D009118 5.4e-19 97.1 63 79.4
TWI59G0786 Tripterygium wilfordii HOM05D007265 ORTHO05D009118 5.4e-19 97.1 64 76.6
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 5.4e-19 97.1 63 76.2
Gohir.A12G113200 Gossypium hirsutum HOM05D007265 ORTHO05D009118 7.0e-19 96.7 63 77.8
CANSAT56G3703 Cannabis sativa HOM05D007265 ORTHO05D009118 9.2e-19 96.3 64 76.6
Potri.002G173101 Populus trichocarpa HOM05D007265 ORTHO05D009118 9.2e-19 96.3 65 76.9
Oeu007878.1 Olea europaea HOM05D007265 ORTHO05D009118 1.2e-18 95.9 55 85.5
Lalb_Chr18g0044541 Lupinus albus HOM05D007265 ORTHO05D009118 2.0e-18 95.1 64 78.1
HanXRQChr16g0521331 Helianthus annuus HOM05D007265 ORTHO05D009118 2.7e-18 94.7 62 74.2
Manes.05G021500 Manihot esculenta HOM05D007265 ORTHO05D009118 2.7e-18 94.7 63 74.6
Aqoxy5G04249 Aquilegia oxysepala HOM05D007265 ORTHO05D009118 4.6e-18 94.0 61 73.8
MSTRG.17355 Avicennia marina HOM05D007265 ORTHO05D009118 4.6e-18 94.0 55 85.5
BcaC02g07039 Brassica carinata HOM05D007265 ORTHO05D009118 1.0e-17 92.8 63 74.6
Manes.01G244801 Manihot esculenta HOM05D007265 ORTHO05D009118 1.3e-17 92.4 63 73.0
Os05g0542100 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 1.3e-17 92.4 63 71.4
Sc01g0002550 Simmondsia chinensis HOM05D007265 ORTHO05D009118 1.3e-17 92.4 57 77.2
A04p34450 Brassica napus HOM05D007265 ORTHO05D009118 3.0e-17 91.3 63 73.0
Lalb_Chr15g0076341 Lupinus albus HOM05D007265 ORTHO05D009118 3.0e-17 91.3 64 75.0
Psat3g174080 Pisum sativum HOM05D007265 ORTHO05D009118 3.9e-17 90.9 56 80.4
Hund16719 Selenicereus undatus HOM05D007265 ORTHO05D009118 5.0e-17 90.5 81 60.5
Lsat_1_v5_gn_4_39661 Lactuca sativa HOM05D007265 ORTHO05D009118 8.6e-17 89.7 58 72.4
BraA04t18903Z Brassica rapa HOM05D007265 ORTHO05D009118 1.1e-16 89.4 63 71.4
MBI07_g24775_MAGBIO Magnolia biondii HOM05D007265 ORTHO05D009118 2.5e-16 88.2 60 73.3
A05p01230 Brassica napus HOM05D007265 ORTHO05D009118 3.3e-16 87.8 55 80.0
Nn3g18955 Nelumbo nucifera HOM05D007265 ORTHO05D009118 3.3e-16 87.8 63 76.2
Psat3g001880 Pisum sativum HOM05D007265 ORTHO05D009118 4.3e-16 87.4 52 82.7
COL.COLO4_06226 Corchorus olitorius HOM05D007265 ORTHO05D009118 9.5e-16 86.3 54 81.5
SalBow5G3999 Salvia bowleyana HOM05D002476 ORTHO05D002652 9.5e-16 86.3 55 80.0
Hund27188 Selenicereus undatus HOM05D007265 ORTHO05D009118 9.5e-16 86.3 57 75.4
BolC4t28709H Brassica oleracea HOM05D007265 ORTHO05D009118 1.2e-15 85.9 63 68.3
Gorai.008G126400 Gossypium raimondii HOM05D007265 ORTHO05D009118 1.2e-15 85.9 55 78.2
BcaC02g07016 Brassica carinata HOM05D007265 ORTHO05D009118 2.1e-15 85.1 55 76.4
vmacro13170 Vaccinium macrocarpon HOM05D007265 ORTHO05D009118 2.8e-15 84.7 58 74.1
Aa31LG1G27910 Aethionema arabicum HOM05D007265 ORTHO05D009118 6.2e-15 83.6 54 75.9
Rhsim01G0174400 Rhododendron simsii HOM05D007265 ORTHO05D009118 1.4e-14 82.4 79 58.2
EL10Ac1g00247 Beta vulgaris HOM05D007265 ORTHO05D009118 4.0e-14 80.9 55 69.1
AUR62004508 Chenopodium quinoa HOM05D007265 ORTHO05D009118 2.0e-13 78.6 54 70.4
Thhalv10001742m.g Eutrema salsugineum HOM05D007265 ORTHO05D009118 2.0e-13 78.6 111 45.0
Ah.05g179400 Amaranthus hybridus HOM05D007265 ORTHO05D009118 1.3e-12 75.9 57 68.4
BcaNung06658 Brassica carinata HOM05D007265 ORTHO05D009118 2.9e-12 74.7 48 77.1
Gorai.007G109700 Gossypium raimondii HOM05D007265 ORTHO05D009118 6.4e-12 73.6 48 77.1
Os01g0705500 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 1.4e-11 72.4 48 75.0
Nitab4.5_0010712g0030 Nicotiana tabacum HOM05D007265 ORTHO05D009118 1.0e-09 66.2 38 84.2
RcHm_v2.0_Chr1g0360081 Rosa chinensis HOM05D000497 ORTHO05D013080 1.0e-09 66.2 38 84.2
AUR62016412 Chenopodium quinoa HOM05D007265 ORTHO05D009118 1.2e-07 59.3 63 49.2
SGA_v2.0_scaffold232G43548 Striga asiatica HOM05D007265 ORTHO05D009118 1.2e-07 59.3 36 77.8
TAR375G0162 Trochodendron aralioides HOM05D007265 ORTHO05D009118 5.2e-06 53.9 36 83.3


User provided reference genes

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