Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G008420 Cucumis sativus L. HOM05D007869 ORTHO05D009962 1.1e-178 629.8 306 100.0
MELO3C022297.2 Cucumis melo HOM05D007869 ORTHO05D009962 4.8e-158 561.2 306 90.8
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 1.9e-146 522.7 282 87.9
Sed0016589 Sechium edule HOM05D007869 ORTHO05D009962 7.0e-125 451.1 298 73.8
CiPaw.02G045900 Carya illinoinensis HOM05D007869 ORTHO05D009962 1.3e-91 340.5 277 58.5
Duzib138G0629 Durio zibethinus HOM05D007869 ORTHO05D009962 6.6e-91 338.2 288 56.9
TWI14G0946 Tripterygium wilfordii HOM05D007869 ORTHO05D009962 6.6e-91 338.2 290 55.2
Ciclev10021277m.g Citrus clementina HOM05D007869 ORTHO05D009962 2.5e-90 336.3 281 59.1
Atru.chr5.803 Acer truncatum HOM05D007869 ORTHO05D009962 5.6e-90 335.1 279 58.1
Cfa003717 Carpinus fangiana HOM05D007869 ORTHO05D009962 5.6e-90 335.1 278 57.9
CANSAT56G0171 Cannabis sativa HOM05D007869 ORTHO05D009962 2.1e-89 333.2 279 56.6
Lalb_Chr04g0258981 Lupinus albus HOM05D007869 ORTHO05D009962 2.8e-89 332.8 279 58.1
Haze_15765 Corylus avellana HOM05D007869 ORTHO05D009962 3.1e-88 329.3 275 57.1
Glyma.09G283900 Glycine max HOM05D007869 ORTHO05D009962 5.3e-88 328.6 272 56.6
VMungo0251G2255 Vigna mungo HOM05D007869 ORTHO05D009962 9.0e-88 327.8 272 56.2
Glyma.20G001800 Glycine max HOM05D007869 ORTHO05D009962 1.5e-87 327.0 272 56.6
Thecc.01G330400 Theobroma cacao HOM05D007869 ORTHO05D009962 1.5e-87 327.0 279 57.3
Nn3g18755 Nelumbo nucifera HOM05D007869 ORTHO05D009962 2.0e-87 326.6 282 55.3
Prupe.2G203300 Prunus persica HOM05D007869 ORTHO05D009962 2.6e-87 326.2 280 56.1
Phvul.003G003700 Phaseolus vulgaris HOM05D007869 ORTHO05D009962 7.6e-87 324.7 272 55.9
RcHm_v2.0_Chr1g0361741 Rosa chinensis HOM05D007869 ORTHO05D009962 6.4e-86 321.6 277 56.7
FAN10G0101 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.1e-85 320.9 277 57.0
Cpa.g.sc57.67 Carica papaya HOM05D007869 ORTHO05D009962 1.4e-85 320.5 288 53.5
FAN06G2096 Fragaria x ananassa HOM05D007869 ORTHO05D009962 5.4e-85 318.5 277 56.7
Lj2g0022280 Lotus japonicus HOM05D007869 ORTHO05D009962 3.5e-84 315.8 278 54.7
FAN03G1443 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.0e-83 314.3 277 56.0
FAN03G2169 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.0e-83 314.3 277 56.0
FAN06G3475 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.3e-83 313.9 277 55.6
Lalb_Chr17g0337801 Lupinus albus HOM05D007869 ORTHO05D009962 1.7e-83 313.5 280 56.4
COL.COLO4_23074 Corchorus olitorius HOM05D007869 ORTHO05D009962 3.0e-83 312.8 295 52.9
Manes.05G005500 Manihot esculenta HOM05D007869 ORTHO05D009962 3.0e-83 312.8 288 52.4
Psat6g099760 Pisum sativum HOM05D007869 ORTHO05D009962 2.5e-82 309.7 288 52.4
Sabra02G0132700 Salix brachista HOM05D007869 ORTHO05D009962 2.5e-82 309.7 273 56.0
Potri.014G108300 Populus trichocarpa HOM05D007869 ORTHO05D009962 5.6e-82 308.5 277 54.2
Sabra14G0079800 Salix brachista HOM05D007869 ORTHO05D009962 5.6e-82 308.5 278 54.3
Thhalv10009953m.g Eutrema salsugineum HOM05D007869 ORTHO05D009962 1.6e-81 307.0 287 53.7
Medtr1g038260 Medicago truncatula HOM05D007869 ORTHO05D009962 3.6e-81 305.8 280 51.8
THA.LOC104825914 Tarenaya hassleriana HOM05D007869 ORTHO05D009962 1.1e-80 304.3 283 53.7
TPR.G29782 Trifolium pratense HOM05D007869 ORTHO05D009962 1.1e-80 304.3 283 51.6
TAR374G1227 Trochodendron aralioides HOM05D007869 ORTHO05D009962 4.0e-80 302.4 279 51.3
Sp1g01350 Schrenkiella parvula HOM05D007869 ORTHO05D009962 2.2e-78 296.6 283 51.6
A10p01030 Brassica napus HOM05D007869 ORTHO05D009962 2.9e-78 296.2 281 53.4
BolC5t28887H Brassica oleracea HOM05D007869 ORTHO05D009962 3.8e-78 295.8 280 53.6
BraA10t42381Z Brassica rapa HOM05D007869 ORTHO05D009962 3.8e-78 295.8 281 52.7
FAN01G2503 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.1e-77 294.3 232 60.8
C05p01060 Brassica napus HOM05D007869 ORTHO05D009962 1.4e-77 293.9 280 53.2
BcaC05g24607 Brassica carinata HOM05D007869 ORTHO05D009962 2.1e-76 290.0 273 53.5
FAN10G1242 Fragaria x ananassa HOM05D007869 ORTHO05D009962 6.0e-76 288.5 220 61.4
CARHR001570 Cardamine hirsuta HOM05D007869 ORTHO05D009962 1.5e-74 283.9 281 50.2
Sc01g0002100 Simmondsia chinensis HOM05D007869 ORTHO05D009962 2.5e-74 283.1 290 48.3
Aa31LG1G10230 Aethionema arabicum HOM05D007869 ORTHO05D009962 3.3e-74 282.7 289 48.1
Carub.0001s0129 Capsella rubella HOM05D007869 ORTHO05D009962 3.7e-73 279.3 285 48.8
MBI04_g38990_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 4.5e-71 272.3 297 48.1
EL10Ac1g00161 Beta vulgaris HOM05D007869 ORTHO05D009962 7.6e-71 271.6 279 50.2
Zm00001eb398460 Zea mays HOM05D007869 ORTHO05D009962 1.7e-70 270.4 283 49.8
AL4G39680 Arabidopsis lyrata HOM05D007869 ORTHO05D009962 2.9e-70 269.6 287 48.4
Os03g0253600 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 2.9e-70 269.6 280 51.1
AT2G41610 Arabidopsis thaliana HOM05D007869 ORTHO05D009962 3.8e-70 269.2 284 48.2
AUR62023523 Chenopodium quinoa HOM05D007869 ORTHO05D009962 1.1e-69 267.7 275 48.0
AUR62004577 Chenopodium quinoa HOM05D007869 ORTHO05D009962 2.5e-69 266.5 246 52.4
Ah.05g178800 Amaranthus hybridus HOM05D007869 ORTHO05D009962 4.2e-69 265.8 246 54.1
Zm00001eb010960 Zea mays HOM05D007869 ORTHO05D009962 2.7e-68 263.1 274 50.0
Actinidia28076 Actinidia chinensis HOM05D007869 ORTHO05D009962 7.9e-68 261.5 204 61.3
CSS0017560 Camellia sinensis var. sinensis HOM05D007869 ORTHO05D009962 1.9e-66 256.9 239 53.6
arahy.Tifrunner.gnm1.ann1.2P25JP Arachis hypogaea HOM05D007869 ORTHO05D009962 3.3e-66 256.1 270 49.3
Os10g0200700 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 7.4e-66 255.0 281 48.8
arahy.Tifrunner.gnm1.ann1.WBP5Q2 Arachis hypogaea HOM05D007869 ORTHO05D009962 9.6e-66 254.6 263 49.8
HPP92_007374 Vanilla planifolia HOM05D007869 ORTHO05D009962 1.3e-65 254.2 283 47.7
PSO384G3553 Papaver somniferum HOM05D007869 ORTHO05D009962 5.3e-64 248.8 342 43.0
FvH4_7g18090 Fragaria vesca HOM05D007869 ORTHO05D009962 1.0e-62 244.6 205 60.0
ATR0579G134 Amborella trichopoda HOM05D007869 ORTHO05D009962 1.3e-59 234.2 283 45.9
Medtr1g038290 Medicago truncatula HOM05D007869 ORTHO05D009962 1.5e-58 230.7 280 43.6
PSO135G1025 Papaver somniferum HOM05D007869 ORTHO05D009962 7.4e-58 228.4 311 43.1
Gorai.004G148700 Gossypium raimondii HOM05D007869 ORTHO05D009962 2.8e-57 226.5 175 60.6
Gohir.A08G122700 Gossypium hirsutum HOM05D007869 ORTHO05D009962 4.8e-57 225.7 175 60.6
Gohir.D08G144000 Gossypium hirsutum HOM05D007869 ORTHO05D009962 4.8e-57 225.7 175 60.6
Lju170C22T1 Lonicera japonica HOM05D007869 ORTHO05D009962 1.0e-54 218.0 196 52.6
MBI04_g27772_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 5.0e-54 215.7 242 48.3
FvH4_7g18120 Fragaria vesca HOM05D007869 ORTHO05D009962 2.7e-52 209.9 157 65.0
Rhsim01G0181500 Rhododendron simsii HOM05D007869 ORTHO05D009962 2.9e-46 189.9 177 53.7
Dinv32655 Davidia involucrata HOM05D007869 ORTHO05D009962 9.4e-37 158.3 133 54.1
Duzib133G0538 Durio zibethinus HOM05D007869 ORTHO05D009962 2.0e-15 87.4 177 31.1
SEGI_25376 Sequoiadendron giganteum HOM05D007869 ORTHO05D009962 5.0e-14 82.8 106 43.4


User provided reference genes

Program Settings