Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 1.4e-80 302.8 135 100.0
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 2.2e-78 295.4 135 97.8
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 3.0e-72 275.0 135 90.4
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 1.0e-67 260.0 135 85.9
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 8.6e-67 256.9 133 82.0
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 5.6e-66 254.2 135 81.5
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 9.5e-66 253.4 135 80.7
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 1.2e-65 253.1 135 81.5
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 3.6e-65 251.5 135 81.5
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 1.0e-64 250.0 135 80.0
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 1.4e-64 249.6 135 78.5
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 1.8e-64 249.2 135 80.0
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 3.0e-64 248.4 135 80.7
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 4.0e-64 248.1 135 77.8
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 8.9e-64 246.9 135 80.0
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 1.2e-63 246.5 148 73.6
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 2.6e-63 245.4 147 74.1
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 4.4e-63 244.6 135 77.0
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 1.7e-62 242.7 147 73.5
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 2.9e-62 241.9 135 77.8
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.4e-61 238.8 152 69.7
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 5.4e-61 237.7 152 69.7
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 7.0e-61 237.3 135 76.3
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 9.2e-61 236.9 145 71.0
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.2e-60 236.5 135 75.6
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 1.2e-60 236.5 134 78.4
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 2.0e-60 235.7 147 71.4
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 2.7e-60 235.3 135 76.3
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.7e-60 235.3 150 70.7
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 7.8e-60 233.8 135 74.1
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 2.3e-59 232.3 135 74.1
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 2.3e-59 232.3 135 75.6
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.3e-59 232.3 153 67.3
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 5.0e-59 231.1 135 73.3
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 8.6e-59 230.3 135 74.1
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 8.6e-59 230.3 135 74.1
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 8.6e-59 230.3 144 70.8
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 8.6e-59 230.3 150 68.7
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 2.5e-58 228.8 135 74.1
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 2.5e-58 228.8 135 74.1
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 2.5e-58 228.8 153 66.7
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 4.3e-58 228.0 135 74.1
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 4.3e-58 228.0 133 71.4
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 5.6e-58 227.6 135 72.6
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 1.2e-57 226.5 158 64.6
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 1.2e-57 226.5 138 73.2
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 1.2e-57 226.5 122 77.9
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 1.2e-57 226.5 135 73.3
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 1.2e-57 226.5 148 68.2
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 2.1e-57 225.7 148 66.9
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.1e-57 225.7 137 73.0
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.1e-57 225.7 137 73.0
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 2.1e-57 225.7 137 73.0
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 2.8e-57 225.3 122 77.9
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 2.8e-57 225.3 135 72.6
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 3.6e-57 224.9 135 73.3
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 3.6e-57 224.9 136 72.8
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 4.7e-57 224.6 150 65.3
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 6.2e-57 224.2 156 66.0
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 6.2e-57 224.2 135 74.1
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 8.0e-57 223.8 135 71.9
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 8.0e-57 223.8 135 71.9
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 1.0e-56 223.4 139 72.7
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 1.0e-56 223.4 145 68.3
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 1.0e-56 223.4 135 72.6
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 1.8e-56 222.6 136 73.5
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 1.8e-56 222.6 135 71.1
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 1.8e-56 222.6 136 72.8
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 2.3e-56 222.2 146 65.8
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 2.3e-56 222.2 153 64.1
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 3.1e-56 221.9 135 71.1
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 3.1e-56 221.9 136 72.8
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 3.1e-56 221.9 136 72.8
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 3.1e-56 221.9 153 64.1
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 3.1e-56 221.9 129 75.2
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 6.8e-56 220.7 149 67.8
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 6.8e-56 220.7 147 66.0
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 2.6e-55 218.8 122 77.9
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 4.4e-55 218.0 132 71.2
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 5.8e-55 217.6 159 60.4
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 7.5e-55 217.2 121 76.0
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 7.5e-55 217.2 133 72.9
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 9.8e-55 216.9 154 61.7
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 9.8e-55 216.9 154 61.7
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 1.3e-54 216.5 133 72.9
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 1.7e-54 216.1 153 64.1
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.2e-54 215.7 135 71.1
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 4.9e-54 214.5 147 63.9
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 8.3e-54 213.8 122 74.6
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 1.9e-53 212.6 147 63.9
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 1.2e-52 209.9 141 64.5
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 1.6e-52 209.5 142 66.9
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 6.0e-52 207.6 129 70.5
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 1.7e-51 206.1 153 61.4
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 2.3e-51 205.7 138 70.3
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 2.3e-51 205.7 126 73.0
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 3.0e-51 205.3 130 69.2
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 3.9e-51 204.9 156 59.0
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 3.9e-51 204.9 133 66.9
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 5.0e-51 204.5 130 68.5
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 6.6e-51 204.1 130 67.7
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 3.3e-50 201.8 119 70.6
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 9.5e-50 200.3 130 68.5
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.2e-49 199.9 126 69.0
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 6.2e-49 197.6 153 60.8
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 2.2e-46 189.1 142 59.2
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 2.1e-44 182.6 112 71.4
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 2.1e-44 182.6 112 71.4
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 2.7e-44 182.2 156 56.4
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 6.0e-44 181.0 123 64.2
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 1.5e-39 166.4 105 70.5
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 3.4e-39 165.2 173 47.4
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 5.8e-39 164.5 119 57.1
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 7.1e-37 157.5 113 59.3
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 3.9e-35 151.8 136 50.7
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 9.6e-34 147.1 87 71.3
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 2.8e-33 145.6 119 52.1
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 1.4e-32 143.3 145 47.6
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 1.7e-27 126.3 72 73.6
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 5.3e-24 114.8 59 81.4
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 1.3e-22 110.2 58 74.1
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 2.3e-19 99.4 114 46.5
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 4.8e-17 91.7 81 53.1
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 8.1e-17 90.9 53 69.8
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 6.9e-16 87.8 80 51.2
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 5.8e-15 84.7 110 40.9
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 5.8e-15 84.7 80 51.2
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 1.7e-14 83.2 74 51.4
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 8.4e-14 80.9 104 40.4
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 4.6e-12 75.1 135 34.8
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 1.3e-11 73.6 75 49.3
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 6.7e-11 71.2 42 69.0
SEGI_18844 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 6.7e-11 71.2 49 63.3
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 3.3e-10 68.9 50 58.0
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 3.7e-09 65.5 94 38.3
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 6.2e-09 64.7 47 59.6
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 6.2e-09 64.7 46 60.9
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 6.2e-09 64.7 46 60.9
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 1.2e-07 60.5 102 31.4
SalBow8G3396 Salvia bowleyana HOM05D018271 ORTHO05D007055 8.4e-06 54.3 29 75.9


User provided reference genes

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