Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G007090 Cucumis sativus L. HOM05D004575 ORTHO05D005774 8.8e-105 383.6 195 100.0
ClCG06G001160 Citrullus lanatus HOM05D004575 ORTHO05D005774 4.4e-104 381.3 195 99.0
Sed0010156 Sechium edule HOM05D004575 ORTHO05D005774 9.7e-104 380.2 195 98.5
Sed0010445 Sechium edule HOM05D004575 ORTHO05D005774 1.3e-103 379.8 195 97.9
TWI34G1141 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 9.1e-102 373.6 195 96.4
Manes.14G111600 Manihot esculenta HOM05D004575 ORTHO05D005774 1.2e-101 373.2 195 95.9
Potri.006G187300 Populus trichocarpa HOM05D004575 ORTHO05D005774 1.2e-101 373.2 195 96.4
Cc06_g15230 Coffea canephora HOM05D004575 ORTHO05D005774 1.5e-101 372.9 195 95.9
Prupe.7G260200 Prunus persica HOM05D004575 ORTHO05D005774 1.5e-101 372.9 195 96.4
Atru.chr7.129 Acer truncatum HOM05D004575 ORTHO05D005774 2.0e-101 372.5 195 96.4
MD02G1009800 Malus domestica HOM05D004575 ORTHO05D005774 2.0e-101 372.5 195 96.4
Cpa.g.sc46.126 Carica papaya HOM05D004575 ORTHO05D005774 4.5e-101 371.3 195 95.9
Manes.06G037700 Manihot esculenta HOM05D004575 ORTHO05D005774 4.5e-101 371.3 195 95.4
CiPaw.15G174300 Carya illinoinensis HOM05D004575 ORTHO05D005774 5.9e-101 370.9 195 95.4
Duzib150G0006 Durio zibethinus HOM05D004575 ORTHO05D005774 5.9e-101 370.9 195 95.4
Thecc.09G033600 Theobroma cacao HOM05D004575 ORTHO05D005774 5.9e-101 370.9 195 95.4
Nitab4.5_0006294g0110 Nicotiana tabacum HOM05D004575 ORTHO05D005774 7.7e-101 370.5 195 94.9
RcHm_v2.0_Chr2g0085961 Rosa chinensis HOM05D004575 ORTHO05D005774 7.7e-101 370.5 195 95.4
Duzib187G1707 Durio zibethinus HOM05D004575 ORTHO05D005774 1.0e-100 370.2 195 94.9
TWI32G0637 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 1.0e-100 370.2 195 95.4
GSVIVG01023596001 Vitis vinifera HOM05D004575 ORTHO05D005774 1.0e-100 370.2 195 95.4
CSS0046088 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 1.3e-100 369.8 195 94.9
Cfa020846 Carpinus fangiana HOM05D004575 ORTHO05D005774 1.3e-100 369.8 195 94.9
AUR62039306 Chenopodium quinoa HOM05D004575 ORTHO05D005774 1.7e-100 369.4 195 95.4
Dinv42882 Davidia involucrata HOM05D004575 ORTHO05D005774 1.7e-100 369.4 195 94.9
Migut.K00340 Erythranthe guttata HOM05D004575 ORTHO05D005774 1.7e-100 369.4 195 94.9
PSO170G2264 Papaver somniferum HOM05D004575 ORTHO05D005774 1.7e-100 369.4 195 94.4
FvH4_1g01170 Fragaria vesca HOM05D004575 ORTHO05D005774 2.2e-100 369.0 195 94.9
Hma1.2p1_0171F.1_g075580 Hydrangea macrophylla HOM05D004575 ORTHO05D005774 2.2e-100 369.0 195 95.4
MSTRG.6119 Avicennia marina HOM05D004575 ORTHO05D005774 2.9e-100 368.6 195 92.8
Lj6g0023555 Lotus japonicus HOM05D004575 ORTHO05D005774 3.8e-100 368.2 195 94.4
Os01g0708600 Oryza sativa ssp. japonica HOM05D004575 ORTHO05D005774 3.8e-100 368.2 195 93.3
Zm00001eb271220 Zea mays HOM05D004575 ORTHO05D005774 3.8e-100 368.2 195 93.3
CDE05G0409 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 5.0e-100 367.9 195 93.8
Glyma.11G226500 Glycine max HOM05D004575 ORTHO05D005774 5.0e-100 367.9 195 94.4
Oeu050476.1 Olea europaea HOM05D004575 ORTHO05D005774 5.0e-100 367.9 195 93.8
arahy.Tifrunner.gnm1.ann1.Y2RET6 Arachis hypogaea HOM05D004575 ORTHO05D005774 6.5e-100 367.5 195 94.4
MELO3C022418.2 Cucumis melo HOM05D004575 ORTHO05D005774 6.5e-100 367.5 186 99.5
Nn8g39815 Nelumbo nucifera HOM05D004575 ORTHO05D005774 8.5e-100 367.1 195 94.4
SalBow1G0111 Salvia bowleyana HOM05D004575 ORTHO05D005774 8.5e-100 367.1 195 92.8
CAN.G1263.31 Capsicum annuum HOM05D004575 ORTHO05D005774 1.1e-99 366.7 195 94.4
Ca_03494_v3 Cicer arietinum L. HOM05D004575 ORTHO05D005774 1.4e-99 366.3 195 93.8
Ah.09g232410 Amaranthus hybridus HOM05D004575 ORTHO05D005774 1.9e-99 365.9 195 93.3
CANSAT11G1798 Cannabis sativa HOM05D004575 ORTHO05D005774 1.9e-99 365.9 195 93.3
Phvul.001G239800 Phaseolus vulgaris HOM05D004575 ORTHO05D005774 1.9e-99 365.9 195 93.3
AL8G34130 Arabidopsis lyrata HOM05D004575 ORTHO05D005774 2.5e-99 365.5 193 94.3
BolC3t13904H Brassica oleracea HOM05D004575 ORTHO05D005774 2.5e-99 365.5 193 94.3
Dinv43218 Davidia involucrata HOM05D004575 ORTHO05D005774 2.5e-99 365.5 193 94.3
Thhalv10014736m.g Eutrema salsugineum HOM05D004575 ORTHO05D005774 2.5e-99 365.5 193 94.3
Glyma.18G030800 Glycine max HOM05D004575 ORTHO05D005774 2.5e-99 365.5 195 93.8
Lj6g0023669 Lotus japonicus HOM05D004575 ORTHO05D005774 2.5e-99 365.5 195 93.3
Solyc04g015050.3 Solanum lycopersicum HOM05D004575 ORTHO05D005774 2.5e-99 365.5 195 94.4
Sopen04g007070 Solanum pennellii HOM05D004575 ORTHO05D005774 2.5e-99 365.5 195 94.4
Aa31LG3G13850 Aethionema arabicum HOM05D004575 ORTHO05D005774 4.2e-99 364.8 193 93.8
ATR0626G208 Amborella trichopoda HOM05D004575 ORTHO05D005774 4.2e-99 364.8 195 92.8
Gorai.009G054900 Gossypium raimondii HOM05D004575 ORTHO05D005774 4.2e-99 364.8 195 93.3
PGSC0003DMG400015006 Solanum tuberosum HOM05D004575 ORTHO05D005774 4.2e-99 364.8 193 94.8
THA.LOC104813540 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 4.2e-99 364.8 195 93.3
AT5G58030 Arabidopsis thaliana HOM05D004575 ORTHO05D005774 5.5e-99 364.4 193 93.8
Carub.0008s1858 Capsella rubella HOM05D004575 ORTHO05D005774 5.5e-99 364.4 193 93.8
CARHR271840 Cardamine hirsuta HOM05D004575 ORTHO05D005774 5.5e-99 364.4 193 93.8
HanXRQChr15g0473271 Helianthus annuus HOM05D004575 ORTHO05D005774 5.5e-99 364.4 195 92.3
VMungo1383G0542 Vigna mungo HOM05D004575 ORTHO05D005774 5.5e-99 364.4 195 93.3
BolC2t07482H Brassica oleracea HOM05D004575 ORTHO05D005774 7.2e-99 364.0 193 94.3
Lalb_Chr12g0198611 Lupinus albus HOM05D004575 ORTHO05D005774 7.2e-99 364.0 195 92.8
Psat5g127440 Pisum sativum HOM05D004575 ORTHO05D005774 7.2e-99 364.0 195 93.3
Medtr3g070070 Medicago truncatula HOM05D004575 ORTHO05D005774 9.4e-99 363.6 195 92.8
Gohir.A05G051600 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.2e-98 363.2 195 92.8
Gohir.A13G184800 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.6e-98 362.8 195 92.8
Gohir.D13G191200 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.6e-98 362.8 195 92.8
Potri.018G110000 Populus trichocarpa HOM05D004575 ORTHO05D005774 1.6e-98 362.8 195 93.8
unitig_0.g919 Utricularia gibba HOM05D004575 ORTHO05D005774 2.1e-98 362.5 193 93.3
Lsat_1_v5_gn_6_106621 Lactuca sativa HOM05D004575 ORTHO05D005774 2.7e-98 362.1 195 91.3
Ciclev10009392m.g Citrus clementina HOM05D004575 ORTHO05D005774 3.6e-98 361.7 187 96.8
THA.LOC104817827 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 3.6e-98 361.7 195 92.8
Gohir.D05G053100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 6.1e-98 360.9 195 92.8
Nn2g12311 Nelumbo nucifera HOM05D004575 ORTHO05D005774 6.1e-98 360.9 199 92.5
Aqoxy7G03458 Aquilegia oxysepala HOM05D004575 ORTHO05D005774 1.0e-97 360.1 195 92.3
CSS0038411 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 1.8e-97 359.4 189 94.2
ECA246G3736 Erigeron canadensis HOM05D004575 ORTHO05D005774 1.8e-97 359.4 196 91.8
Haze_19234 Corylus avellana HOM05D004575 ORTHO05D005774 2.3e-97 359.0 186 96.2
Gorai.013G217200 Gossypium raimondii HOM05D004575 ORTHO05D005774 3.0e-97 358.6 195 91.8
CSS0012079 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 6.7e-97 357.5 189 94.2
QL02p092713 Quercus lobata HOM05D004575 ORTHO05D005774 6.7e-97 357.5 185 96.2
SGA_v2.0_scaffold45G17045 Striga asiatica HOM05D004575 ORTHO05D005774 8.8e-97 357.1 186 94.6
TAR625G1476 Trochodendron aralioides HOM05D004575 ORTHO05D005774 1.5e-96 356.3 195 90.8
DCAR_029638 Daucus carota HOM05D004575 ORTHO05D005774 2.0e-96 355.9 187 94.1
BraA03t10558Z Brassica rapa HOM05D004575 ORTHO05D005774 2.6e-96 355.5 186 94.6
Dinv41397 Davidia involucrata HOM05D004575 ORTHO05D005774 2.6e-96 355.5 189 93.7
Sabra06G0143200 Salix brachista HOM05D004575 ORTHO05D005774 2.6e-96 355.5 187 94.1
BraA02t05876Z Brassica rapa HOM05D004575 ORTHO05D005774 3.3e-96 355.1 188 94.1
COL.COLO4_18777 Corchorus olitorius HOM05D000537 ORTHO05D005774 3.3e-96 355.1 185 95.1
Eucgr.C00362 Eucalyptus grandis HOM05D004575 ORTHO05D005774 3.3e-96 355.1 185 95.7
AUR62022430 Chenopodium quinoa HOM05D004575 ORTHO05D005774 4.4e-96 354.8 185 95.7
TAR636G1369 Trochodendron aralioides HOM05D004575 ORTHO05D005774 5.7e-96 354.4 185 94.1
BcaB01g04472 Brassica carinata HOM05D004575 ORTHO05D005774 7.4e-96 354.0 185 94.6
A03p12440 Brassica napus HOM05D004575 ORTHO05D005774 7.4e-96 354.0 185 94.6
C03p14640 Brassica napus HOM05D004575 ORTHO05D005774 7.4e-96 354.0 185 94.6
Sp6g19710 Schrenkiella parvula HOM05D004575 ORTHO05D005774 7.4e-96 354.0 187 94.1
A02p08040 Brassica napus HOM05D004575 ORTHO05D005774 2.2e-95 352.4 185 94.6
C02p13680 Brassica napus HOM05D004575 ORTHO05D005774 2.2e-95 352.4 185 94.6
Lsat_1_v5_gn_9_77921 Lactuca sativa HOM05D004575 ORTHO05D005774 1.1e-94 350.1 186 92.5
SEGI_30669 Sequoiadendron giganteum HOM05D004575 ORTHO05D005774 1.8e-94 349.4 195 88.7
Sabra18G0093000 Salix brachista HOM05D004575 ORTHO05D005774 1.7e-92 342.8 218 81.7
EL10Ac4g09955 Beta vulgaris HOM05D004575 ORTHO05D005774 2.9e-92 342.0 195 89.2
Nitab4.5_0000147g0360 Nicotiana tabacum HOM05D004575 ORTHO05D005774 3.8e-92 341.7 195 89.2
AagrBONN_evm.TU.Sc2ySwM_228.2396 Anthoceros agrestis HOM05D004575 ORTHO05D005774 8.5e-92 340.5 195 86.2
Sabra06G0142200 Salix brachista HOM05D004575 ORTHO05D005774 8.5e-92 340.5 215 81.9
Mapoly0012s0171 Marchantia polymorpha HOM05D004575 ORTHO05D005774 1.2e-90 336.7 195 86.2
Peaxi162Scf00811g00111 Petunia axillaris HOM05D004575 ORTHO05D005774 1.6e-90 336.3 195 87.7
THA.LOC104817825 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 8.0e-90 334.0 226 77.4
HPP92_023290 Vanilla planifolia HOM05D004575 ORTHO05D005774 1.2e-88 330.1 176 93.2
CBR_g31075 Chara braunii HOM05D004575 ORTHO05D005774 4.1e-86 321.6 194 79.4
CDE05G3286 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 7.0e-86 320.9 195 84.6
SMO356G0367 Selaginella moellendorffii HOM05D004575 ORTHO05D005774 2.7e-85 318.9 195 79.0
PGR142G2168 Punica granatum HOM05D004575 ORTHO05D005774 1.2e-80 303.5 194 82.5
FAN19G2168 Fragaria x ananassa HOM05D004575 ORTHO05D005774 3.4e-80 302.0 195 82.1
arahy.Tifrunner.gnm1.ann1.C8YHGX Arachis hypogaea HOM05D004575 ORTHO05D005774 4.4e-80 301.6 195 82.1
PSO017G5222 Papaver somniferum HOM05D004575 ORTHO05D005774 7.5e-80 300.8 195 81.0
Hund04571 Selenicereus undatus HOM05D004575 ORTHO05D005774 7.5e-80 300.8 195 82.1
HanXRQChr01g0001761 Helianthus annuus HOM05D004575 ORTHO05D005774 1.3e-76 290.0 166 86.7
FAN26G2236 Fragaria x ananassa HOM05D004575 ORTHO05D005774 2.9e-76 288.9 186 81.7
FAN28G0045 Fragaria x ananassa HOM05D004575 ORTHO05D005774 2.9e-76 288.9 186 81.7
FAN23G2865 Fragaria x ananassa HOM05D004575 ORTHO05D005774 1.9e-75 286.2 186 81.2
Sc10g0009430 Simmondsia chinensis HOM05D004575 ORTHO05D005774 1.9e-75 286.2 150 96.7
Pp3c22_3220 Physcomitrium patens HOM05D004575 ORTHO05D005774 1.3e-71 273.5 195 72.8
MBI14_g37099_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D003073 2.5e-67 259.2 134 94.0
MCO07G641 Micromonas commoda HOM05D004575 ORTHO05D005774 7.0e-62 241.1 181 65.7
Pp3c19_5830 Physcomitrium patens HOM05D004575 ORTHO05D005774 2.0e-61 239.6 142 81.7
TPR.G29813 Trifolium pratense HOM05D004575 ORTHO05D005774 1.9e-59 233.0 124 92.7
MBI10_g16410_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 4.3e-59 231.9 180 68.3
MBI19_g38854_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.4e-54 216.9 119 91.6
MBI15_g16628_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 4.1e-54 215.3 123 87.0
Rhsim04G0120400 Rhododendron simsii HOM05D004575 ORTHO05D005774 9.2e-54 214.2 148 76.4
BcaB08g36156 Brassica carinata HOM05D004575 ORTHO05D005774 8.3e-47 191.0 186 59.7
Cre03.g146467 Chlamydomonas reinhardtii HOM05D004575 ORTHO05D005774 6.0e-45 184.9 188 50.0
Actinidia04286 Actinidia chinensis HOM05D004575 ORTHO05D005774 2.5e-43 179.5 93 96.8
PRCOL_00004142 Prasinoderma coloniale HOM05D004575 ORTHO05D005774 3.3e-43 179.1 173 53.2
MBI15_g43789_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.1e-38 164.1 123 71.5
Actinidia38338 Actinidia chinensis HOM05D004575 ORTHO05D005774 1.4e-38 163.7 83 95.2
MBI04_g06937_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 3.3e-35 152.5 75 97.3
MBI18_g29808_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 9.6e-35 151.0 75 96.0
MBI19_g16412_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 2.4e-33 146.4 79 93.7
Gohir.D05G367100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.7e-28 130.2 69 95.7
Gohir.D10G164601 Gossypium hirsutum HOM05D004575 ORTHO05D005774 3.9e-28 129.0 69 94.2
Peaxi162Scf00827g00622 Petunia axillaris HOM05D004575 ORTHO05D005774 8.4e-23 111.3 58 91.4
Lj7A455T27 Lonicera japonica HOM05D004575 ORTHO05D005774 2.3e-20 103.2 54 94.4
Nitab4.5_0001296g0040 Nicotiana tabacum HOM05D001883 ORTHO05D002184 1.8e-17 93.6 73 65.8
A10p16140 Brassica napus HOM05D004575 ORTHO05D005774 2.4e-17 93.2 109 51.4
Gorai.010G087100 Gossypium raimondii HOM05D004575 ORTHO05D005774 4.5e-16 89.0 47 91.5
Lj7A455G28 Lonicera japonica HOM05D004575 ORTHO05D005774 1.1e-14 84.3 104 49.0
BolC3t13444H Brassica oleracea HOM05D004575 ORTHO05D010533 1.9e-14 83.6 42 92.9
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 7.1e-14 81.6 52 71.2
C09p49950 Brassica napus HOM05D004575 ORTHO05D033743 9.3e-14 81.3 90 53.3
Gorai.010G090900 Gossypium raimondii HOM05D004575 ORTHO05D005774 3.5e-13 79.3 50 78.0
Gohir.D02G098900 Gossypium hirsutum HOM05D004575 ORTHO05D047984 7.9e-13 78.2 41 95.1
Gorai.007G286700 Gossypium raimondii HOM05D004575 ORTHO05D047984 8.7e-12 74.7 39 94.9
RcHm_v2.0_Chr2g0167881 Rosa chinensis HOM05D004575 ORTHO05D005774 1.3e-10 70.9 43 81.4
RcHm_v2.0_Chr2g0167891 Rosa chinensis HOM05D004575 ORTHO05D005774 1.3e-10 70.9 43 81.4
A01p23900 Brassica napus HOM05D001825 ORTHO05D010533 8.4e-07 58.2 39 74.4
MELO3C033919.2 Cucumis melo HOM05D004575 ORTHO05D168156 5.5e-06 55.5 69 44.9


User provided reference genes

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