Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.8e-76 288.5 144 100.0
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 5.9e-66 254.2 139 90.6
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 2.1e-63 245.7 139 88.5
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 6.1e-63 244.2 168 77.4
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.8e-62 242.7 168 76.8
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.8e-62 242.7 168 76.8
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 5.2e-62 241.1 139 84.9
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 1.7e-60 236.1 139 83.5
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 1.7e-60 236.1 139 83.5
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 2.2e-60 235.7 139 84.2
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 2.2e-60 235.7 139 81.3
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 4.9e-60 234.6 139 82.0
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 6.3e-60 234.2 139 79.9
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.1e-59 233.4 139 82.0
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 2.4e-59 232.3 139 82.7
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 4.1e-59 231.5 139 81.3
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 5.4e-59 231.1 139 82.0
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 9.2e-59 230.3 139 80.6
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 1.6e-58 229.6 139 79.1
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 3.5e-58 228.4 138 81.2
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 4.5e-58 228.0 139 79.9
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 4.5e-58 228.0 137 78.8
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 4.5e-58 228.0 139 79.9
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 4.5e-58 228.0 139 79.9
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 4.5e-58 228.0 139 79.9
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 5.9e-58 227.6 139 80.6
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 7.8e-58 227.3 139 79.9
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 7.8e-58 227.3 139 79.9
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 1.0e-57 226.9 139 79.9
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 1.0e-57 226.9 139 81.3
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.0e-57 226.9 135 79.3
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 1.0e-57 226.9 139 79.9
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 1.3e-57 226.5 139 80.6
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 2.3e-57 225.7 135 79.3
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 2.3e-57 225.7 139 80.6
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 2.3e-57 225.7 139 79.9
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 2.3e-57 225.7 135 79.3
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 2.3e-57 225.7 139 79.1
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 3.8e-57 224.9 139 77.7
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 3.8e-57 224.9 139 79.1
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 5.0e-57 224.6 135 78.5
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 5.0e-57 224.6 139 79.9
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 5.0e-57 224.6 136 78.7
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 5.0e-57 224.6 137 81.0
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 6.6e-57 224.2 139 77.7
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 6.6e-57 224.2 139 75.5
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 6.6e-57 224.2 135 79.3
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 6.6e-57 224.2 139 77.7
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 6.6e-57 224.2 137 80.3
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 8.6e-57 223.8 139 78.4
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 8.6e-57 223.8 139 78.4
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 1.1e-56 223.4 139 77.0
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 1.1e-56 223.4 139 79.1
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 1.5e-56 223.0 139 76.3
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 1.5e-56 223.0 139 76.3
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 1.5e-56 223.0 139 79.1
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 1.9e-56 222.6 139 76.3
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 1.9e-56 222.6 139 76.3
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 1.9e-56 222.6 139 76.3
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 1.9e-56 222.6 139 78.4
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 2.5e-56 222.2 139 77.7
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 2.5e-56 222.2 139 77.7
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 2.5e-56 222.2 139 79.1
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 3.3e-56 221.9 139 76.3
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 3.3e-56 221.9 139 77.0
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 4.3e-56 221.5 139 75.5
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 4.3e-56 221.5 139 75.5
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 5.6e-56 221.1 139 77.0
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 7.3e-56 220.7 139 76.3
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 7.3e-56 220.7 139 77.7
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 9.5e-56 220.3 139 77.7
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 9.5e-56 220.3 139 76.3
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 9.5e-56 220.3 139 76.3
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 9.5e-56 220.3 139 76.3
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 9.5e-56 220.3 139 74.8
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 1.2e-55 219.9 139 76.3
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 2.1e-55 219.2 139 75.5
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 2.8e-55 218.8 144 75.0
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 4.7e-55 218.0 149 73.2
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 4.7e-55 218.0 139 73.4
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 6.1e-55 217.6 139 74.8
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 6.1e-55 217.6 139 74.8
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 6.1e-55 217.6 138 76.1
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 6.1e-55 217.6 139 74.8
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 8.0e-55 217.2 137 74.5
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 8.0e-55 217.2 135 77.0
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 1.0e-54 216.9 139 75.5
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 1.0e-54 216.9 139 74.8
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 1.4e-54 216.5 139 75.5
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 1.4e-54 216.5 138 76.1
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 2.3e-54 215.7 139 74.1
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.0e-54 215.3 135 77.8
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 8.9e-54 213.8 144 74.3
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 8.9e-54 213.8 140 74.3
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 1.2e-53 213.4 139 73.4
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 1.5e-53 213.0 163 69.3
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.0e-53 212.6 177 66.1
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 2.0e-53 212.6 172 63.4
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 2.0e-53 212.6 139 73.4
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 2.6e-53 212.2 139 74.8
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 2.6e-53 212.2 137 73.7
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 2.6e-53 212.2 139 71.2
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 6.4e-52 207.6 139 69.8
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 1.8e-51 206.1 125 78.4
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 1.6e-50 203.0 137 70.8
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 2.7e-50 202.2 120 81.7
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 4.6e-50 201.4 156 70.5
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 1.9e-48 196.1 137 69.3
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 5.6e-48 194.5 143 69.9
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 7.3e-48 194.1 186 57.5
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 4.0e-46 188.3 113 78.8
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 8.9e-46 187.2 193 51.8
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 2.6e-45 185.7 232 47.4
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 3.4e-45 185.3 139 64.0
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 9.8e-45 183.7 165 61.8
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 6.4e-44 181.0 114 74.6
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 6.0e-42 174.5 139 64.7
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 5.6e-40 167.9 110 72.7
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 1.8e-38 162.9 116 67.2
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 7.5e-37 157.5 139 64.7
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 4.6e-34 148.3 115 59.1
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 1.0e-33 147.1 112 61.6
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 2.1e-31 139.4 133 47.4
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 2.7e-26 122.5 74 77.0
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 4.6e-26 121.7 81 71.6
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 4.6e-26 121.7 81 71.6
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 7.8e-26 120.9 75 76.0
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 3.0e-25 119.0 65 87.7
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 2.1e-23 112.8 78 67.9
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 2.8e-23 112.5 76 71.1
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 5.2e-22 108.2 64 78.1
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 1.2e-21 107.1 69 72.5
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 1.5e-21 106.7 61 82.0
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 5.8e-21 104.8 63 81.0
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 9.9e-21 104.0 65 75.4
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 2.2e-20 102.8 104 44.2
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 2.9e-20 102.4 65 72.3
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 3.8e-20 102.1 76 64.5
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 4.9e-20 101.7 83 65.1
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 6.4e-20 101.3 93 59.1
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 2.4e-19 99.4 75 61.3
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 3.2e-19 99.0 106 38.7
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 4.2e-19 98.6 115 37.4
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 9.3e-19 97.4 64 68.8
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 2.5e-16 89.4 106 40.6
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 4.8e-15 85.1 50 78.0
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.4e-14 83.6 104 49.0
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 2.4e-14 82.8 111 39.6
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 2.9e-12 75.9 49 73.5
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 7.9e-10 67.8 60 43.3
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 1.8e-06 56.6 32 84.4
QL04p024921 Quercus lobata HOM05D004886 ORTHO05D005868 4.0e-06 55.5 28 92.9


User provided reference genes

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