Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 2516.1 1271 100.0
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 2416.3 1264 96.4
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 2244.9 1272 89.2
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 2241.1 1273 90.0
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1838.5 1266 73.9
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1815.8 1276 72.1
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1808.5 1257 73.2
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1808.1 1279 71.9
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1804.6 1274 72.1
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1804.6 1281 71.5
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1799.3 1259 72.8
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1793.1 1273 71.6
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1788.9 1275 70.7
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1783.1 1303 70.3
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1777.3 1273 71.3
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1771.1 1276 70.6
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1765.4 1280 70.2
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1763.0 1280 70.2
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1763.0 1278 70.7
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1762.7 1280 70.0
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1758.0 1278 70.1
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1753.4 1257 71.4
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1739.2 1264 69.5
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1738.8 1278 69.5
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1736.1 1263 69.8
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1733.8 1282 69.4
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1730.3 1267 68.9
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1728.8 1280 68.8
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1726.8 1263 69.0
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1726.1 1279 68.6
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1726.1 1282 69.2
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1724.5 1260 68.7
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1720.3 1267 68.4
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1719.1 1266 68.6
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1712.2 1283 67.7
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1708.3 1281 67.8
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1699.1 1277 68.8
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1698.7 1275 68.8
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1696.8 1255 67.9
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1696.4 1326 66.4
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1696.4 1277 67.3
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1693.7 1272 68.6
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1691.8 1297 66.8
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1691.4 1352 64.9
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1684.1 1257 66.7
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1681.8 1281 66.8
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1680.6 1258 67.6
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1664.8 1276 66.1
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1664.8 1285 67.8
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1663.7 1282 66.9
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1662.5 1275 66.4
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1662.5 1256 66.1
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1662.1 1261 66.9
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1658.3 1278 66.1
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1656.0 1271 66.5
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1654.4 1259 66.2
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1653.3 1323 64.9
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1652.9 1263 65.9
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1652.1 1272 66.7
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1650.2 1280 66.3
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1649.8 1271 66.0
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1648.6 1276 66.0
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1646.3 1275 65.7
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1645.9 1256 65.4
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1642.1 1269 66.0
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1640.9 1257 66.4
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1635.2 1186 70.5
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1634.8 1326 63.8
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1627.8 1262 65.5
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1625.1 1257 66.1
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 1609.3 1276 64.4
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1609.0 1263 64.8
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 1607.8 1277 64.7
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1597.8 1235 67.1
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1594.7 1183 67.7
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 1594.3 1280 64.2
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1592.4 1334 62.1
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1591.6 1250 65.0
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1586.6 1282 64.1
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1586.6 1282 64.1
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1552.0 1283 63.3
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1545.0 1195 67.2
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1541.6 1275 63.4
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1541.2 1262 63.5
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1540.8 1296 61.6
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1514.6 1189 64.5
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1513.0 1209 64.1
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1479.9 1025 72.3
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1463.0 1010 72.7
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1458.7 1175 63.7
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1446.4 1290 58.6
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1431.0 1256 59.1
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1430.2 1254 59.0
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1408.3 1263 57.6
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1402.1 1258 58.1
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1241.1 1042 61.9
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1168.7 890 65.7
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 0.0e+00 1165.6 1263 50.0
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 1159.8 1269 49.3
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1159.4 1257 51.8
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 0.0e+00 1131.3 966 59.5
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 0.0e+00 1094.3 890 64.6
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1084.3 955 60.8
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 2.3e-294 1016.1 796 64.2
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 1.1e-291 1007.3 672 75.0
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 7.6e-290 1001.1 1224 45.8
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 4.4e-282 975.3 821 61.6
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 3.7e-268 929.1 1206 44.2
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 7.5e-221 771.9 1310 37.2
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 2.6e-213 746.9 547 69.5
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 5.0e-193 679.5 1408 34.2
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 1.5e-189 667.9 622 55.8
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 7.3e-184 649.0 595 56.0
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 8.9e-182 642.1 481 67.8
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 3.2e-179 633.6 1277 33.6
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 1.3e-172 611.7 495 64.4
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 6.7e-153 546.2 654 47.6
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.5e-128 465.3 326 69.9
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 2.8e-127 461.1 1161 30.8
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 3.7e-127 460.7 703 43.0
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 1.1e-118 432.6 276 77.2
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 2.8e-95 354.8 345 56.8
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 2.4e-94 351.7 231 77.1
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 2.2e-87 328.6 251 69.7
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 2.1e-82 312.0 268 59.0
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 2.1e-82 312.0 268 59.0
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 6.2e-74 283.9 233 61.8
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 1.4e-73 282.7 200 70.0
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 2.4e-54 218.8 180 64.4
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 4.6e-53 214.5 176 63.6
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 2.6e-48 198.7 162 64.2
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 4.4e-48 198.0 157 63.1
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 2.9e-39 168.7 104 75.0
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 1.6e-37 162.9 1208 21.4
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 6.2e-34 151.0 121 64.5
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 3.2e-30 138.7 120 61.7
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 4.2e-30 138.3 112 67.9
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 2.8e-26 125.6 225 38.7
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 2.1e-21 109.4 137 43.1
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 8.7e-20 104.0 115 44.3
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 1.9e-19 102.8 110 51.8
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 5.7e-19 101.3 115 42.6
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 7.4e-19 100.9 95 54.7
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 1.1e-17 97.1 165 33.9
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 2.4e-17 95.9 62 75.8
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 9.0e-17 94.0 127 46.5
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 3.6e-13 82.0 66 56.1
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 3.6e-13 82.0 108 41.7
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 1.0e-12 80.5 56 75.0
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 2.0e-11 76.3 249 25.7
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 2.5e-11 75.9 122 43.4
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 1.8e-09 69.7 47 70.2
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 6.9e-09 67.8 71 53.5
AUR62044220 Chenopodium quinoa HOM05D004478 ORTHO05D018907 2.6e-08 65.9 41 73.2
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 1.9e-06 59.7 157 32.5
AagrBONN_evm.TU.Sc2ySwM_228.35 Anthoceros agrestis HOM05D004478 ORTHO05D072883 2.5e-06 59.3 94 38.3
Gohir.A04G047850 Gossypium hirsutum HOM05D004478 ORTHO05D016211 2.5e-06 59.3 67 49.3
Gohir.A02G122601 Gossypium hirsutum HOM05D004478 ORTHO05D016211 4.2e-06 58.5 66 50.0
Gohir.A06G146601 Gossypium hirsutum HOM05D000669 ORTHO05D015433 4.2e-06 58.5 55 54.5


User provided reference genes

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