Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 4.3e-128 461.5 253 100.0
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 7.1e-115 417.5 256 92.2
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 1.1e-99 367.1 253 82.6
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 8.7e-89 330.9 255 75.3
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 9.1e-86 320.9 253 73.9
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 2.0e-61 240.0 254 56.7
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 5.0e-60 235.3 254 57.1
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 9.4e-59 231.1 256 57.0
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 6.1e-58 228.4 256 54.3
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 8.8e-57 224.6 254 53.1
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 3.4e-56 222.6 253 56.1
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 7.5e-56 221.5 255 55.3
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 1.3e-55 220.7 251 57.4
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 2.2e-55 219.9 256 53.1
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 2.8e-55 219.5 259 51.4
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 1.1e-54 217.6 258 56.2
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 7.0e-54 214.9 253 54.5
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 7.7e-53 211.5 257 49.4
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 7.7e-53 211.5 253 54.5
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 1.7e-52 210.3 251 53.8
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 1.7e-52 210.3 255 52.2
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 2.3e-52 209.9 253 51.8
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 2.9e-52 209.5 244 50.8
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 8.6e-52 208.0 270 51.9
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 1.1e-51 207.6 274 49.6
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 1.9e-51 206.8 245 57.6
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 4.2e-51 205.7 256 48.4
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 4.2e-51 205.7 265 52.1
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 5.5e-51 205.3 254 52.0
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 7.2e-51 204.9 253 51.0
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 7.2e-51 204.9 265 52.5
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 7.2e-51 204.9 254 52.8
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 1.2e-50 204.1 260 49.6
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 1.2e-50 204.1 253 53.0
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 1.6e-50 203.8 255 47.1
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 2.1e-50 203.4 257 48.2
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 2.8e-50 203.0 259 53.3
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 3.0e-49 199.5 264 53.8
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 4.0e-49 199.1 262 51.1
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 4.0e-49 199.1 276 51.1
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 4.0e-49 199.1 253 53.8
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 8.9e-49 198.0 262 50.8
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 1.5e-48 197.2 251 53.0
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 1.5e-48 197.2 252 53.6
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 5.7e-48 195.3 261 50.6
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 9.8e-48 194.5 250 48.8
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 1.3e-47 194.1 236 52.5
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 2.2e-47 193.4 315 45.4
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 2.8e-47 193.0 257 47.1
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 2.8e-47 193.0 261 50.2
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 2.8e-47 193.0 261 50.6
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 8.3e-47 191.4 253 49.8
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 8.3e-47 191.4 259 53.3
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 1.1e-46 191.0 260 46.9
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 4.1e-46 189.1 258 48.4
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 4.1e-46 189.1 258 48.4
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 5.4e-46 188.7 256 48.0
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 5.4e-46 188.7 210 55.2
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 9.2e-46 188.0 254 46.5
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 1.2e-45 187.6 259 49.0
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 1.6e-45 187.2 260 45.4
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 1.6e-45 187.2 242 52.5
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 3.5e-45 186.0 259 49.0
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 3.5e-45 186.0 244 48.4
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 2.3e-44 183.3 257 46.7
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 2.9e-44 183.0 242 49.6
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 3.8e-44 182.6 260 50.4
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 5.0e-44 182.2 256 46.1
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 8.6e-44 181.4 253 46.2
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 1.1e-43 181.0 265 45.7
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.1e-43 181.0 247 47.8
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 2.5e-43 179.9 261 46.7
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 3.3e-43 179.5 261 46.4
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 5.6e-43 178.7 255 49.0
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 5.6e-43 178.7 267 45.7
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 7.3e-43 178.3 260 46.2
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.6e-42 177.2 246 47.2
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 1.6e-42 177.2 249 46.6
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 3.6e-42 176.0 253 43.5
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 4.7e-42 175.6 248 45.6
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 4.7e-42 175.6 253 47.8
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 8.0e-42 174.9 203 51.2
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 1.4e-41 174.1 233 51.1
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 5.2e-41 172.2 163 55.2
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 2.0e-40 170.2 245 46.1
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 2.0e-40 170.2 259 47.1
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 7.5e-40 168.3 264 43.9
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 1.3e-39 167.5 242 47.9
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 2.2e-39 166.8 212 56.1
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 4.9e-39 165.6 280 43.6
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 1.1e-38 164.5 252 44.0
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 9.2e-38 161.4 260 45.0
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 1.2e-37 161.0 251 42.6
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 1.6e-37 160.6 263 43.0
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.6e-37 160.6 282 43.6
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 2.7e-37 159.8 262 43.1
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 4.6e-37 159.1 262 44.3
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 1.3e-36 157.5 157 53.5
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 1.3e-36 157.5 248 45.6
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 1.7e-36 157.1 253 44.7
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 2.3e-36 156.8 248 43.5
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 3.0e-36 156.4 171 57.9
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 3.9e-36 156.0 239 42.3
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 5.0e-36 155.6 251 43.0
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 5.0e-36 155.6 252 43.3
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 2.5e-35 153.3 253 45.8
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 3.3e-35 152.9 169 51.5
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 7.3e-35 151.8 260 45.0
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 7.3e-35 151.8 250 43.6
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 2.8e-34 149.8 258 42.6
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 8.0e-34 148.3 240 44.2
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 1.4e-33 147.5 164 49.4
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 2.3e-33 146.7 136 58.1
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 1.2e-32 144.4 259 43.6
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 2.0e-32 143.7 254 44.5
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 8.3e-31 138.3 272 41.2
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 1.1e-30 137.9 277 41.2
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 1.6e-29 134.0 259 39.4
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 2.0e-29 133.7 165 43.0
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 4.6e-29 132.5 276 39.9
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 6.0e-29 132.1 235 37.0
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 1.3e-28 131.0 232 43.1
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 3.9e-28 129.4 263 38.4
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 8.6e-28 128.3 159 47.8
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 1.1e-27 127.9 141 53.2
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 5.6e-27 125.6 371 34.0
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 2.2e-23 113.6 143 49.0
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 1.4e-22 110.9 240 34.6
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 7.1e-22 108.6 150 47.3
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 9.5e-19 98.2 91 54.9
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 1.4e-17 94.4 127 46.5
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 4.0e-17 92.8 242 29.3
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 2.0e-16 90.5 147 40.1
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 2.6e-16 90.1 244 37.7
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 1.3e-15 87.8 196 33.7
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.3e-12 77.8 255 34.1
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 1.9e-11 73.9 69 56.5
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 4.3e-11 72.8 144 34.7
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 7.3e-11 72.0 156 37.2
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 7.3e-11 72.0 124 46.0
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 9.6e-11 71.6 122 49.2
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 2.8e-10 70.1 227 28.6
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 3.6e-10 69.7 130 46.9
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 5.2e-09 65.9 101 37.6


User provided reference genes

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