Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 3.6e-126 454.9 227 100.0
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 3.7e-107 391.7 227 85.9
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 3.2e-106 388.7 198 97.5
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 4.2e-98 361.7 189 94.2
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 2.7e-97 359.0 198 88.9
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 7.6e-92 340.9 228 74.6
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 7.6e-92 340.9 227 74.9
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 2.1e-89 332.8 198 79.8
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 7.8e-89 330.9 224 72.8
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 1.0e-88 330.5 227 72.7
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 5.6e-87 324.7 211 75.8
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 1.3e-86 323.6 227 69.6
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 2.1e-86 322.8 213 73.7
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 4.8e-86 321.6 214 72.9
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 2.4e-85 319.3 199 75.4
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 6.9e-85 317.8 211 75.4
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 2.6e-84 315.8 227 69.2
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 3.4e-84 315.5 211 74.4
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 5.8e-84 314.7 199 72.4
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 5.8e-84 314.7 199 74.9
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 1.3e-83 313.5 198 73.7
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 3.8e-83 312.0 198 76.3
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 1.1e-82 310.5 230 67.4
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 1.4e-82 310.1 198 73.2
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 4.2e-82 308.5 198 73.2
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 5.4e-82 308.1 198 73.2
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 5.4e-82 308.1 198 74.2
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 9.3e-82 307.4 225 66.7
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 1.2e-81 307.0 199 73.4
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 2.1e-81 306.2 227 64.8
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 2.1e-81 306.2 198 71.2
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 2.1e-81 306.2 225 65.8
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 2.1e-81 306.2 198 72.7
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 2.7e-81 305.8 198 73.7
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 3.5e-81 305.4 220 68.2
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 3.5e-81 305.4 198 73.7
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 4.6e-81 305.1 227 63.9
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 6.0e-81 304.7 198 74.2
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 6.0e-81 304.7 233 64.4
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 7.9e-81 304.3 198 74.2
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 1.3e-80 303.5 198 71.7
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.3e-80 303.5 183 78.1
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 1.3e-80 303.5 196 71.9
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 1.8e-80 303.1 227 64.8
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 2.3e-80 302.8 220 67.3
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 3.0e-80 302.4 198 73.2
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 3.9e-80 302.0 198 70.7
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 6.7e-80 301.2 198 73.2
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 8.7e-80 300.8 198 71.2
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.1e-79 300.4 198 73.7
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 1.5e-79 300.1 226 66.4
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 5.6e-79 298.1 223 67.3
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 5.6e-79 298.1 198 70.2
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 5.6e-79 298.1 198 70.2
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 5.6e-79 298.1 198 70.7
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 7.4e-79 297.7 223 67.3
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 1.3e-78 297.0 199 71.4
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 1.3e-78 297.0 198 71.7
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 1.3e-78 297.0 197 70.1
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 1.6e-78 296.6 197 73.6
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 6.2e-78 294.7 227 63.0
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 6.2e-78 294.7 198 71.2
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 1.1e-77 293.9 198 70.2
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 1.1e-77 293.9 198 71.2
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 1.8e-77 293.1 198 71.7
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 3.1e-77 292.4 196 69.9
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 6.9e-77 291.2 198 68.7
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 6.9e-77 291.2 198 70.7
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 1.5e-76 290.0 196 70.4
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 1.5e-76 290.0 198 68.7
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 2.0e-76 289.7 217 65.4
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 3.4e-76 288.9 197 71.1
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 7.6e-76 287.7 198 71.7
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.0e-75 287.3 184 74.5
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 1.3e-75 287.0 198 66.2
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 1.7e-75 286.6 198 70.7
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 1.7e-75 286.6 200 69.0
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 1.7e-75 286.6 196 68.4
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 2.2e-75 286.2 183 74.9
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 2.2e-75 286.2 186 75.3
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 2.2e-75 286.2 198 69.7
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 3.8e-75 285.4 198 70.7
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 6.5e-75 284.6 184 73.9
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 6.5e-75 284.6 184 73.9
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 6.5e-75 284.6 198 66.7
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 6.5e-75 284.6 198 68.7
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 8.4e-75 284.3 198 66.7
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 8.4e-75 284.3 198 67.7
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 1.1e-74 283.9 198 69.2
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 1.9e-74 283.1 183 71.6
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 2.5e-74 282.7 199 67.8
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 3.2e-74 282.3 198 69.7
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 4.2e-74 282.0 217 62.2
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 7.1e-74 281.2 191 69.6
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 7.1e-74 281.2 198 70.2
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 9.3e-74 280.8 186 74.7
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 1.2e-73 280.4 198 69.7
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 1.2e-73 280.4 198 66.7
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 1.6e-73 280.0 196 68.9
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 2.1e-73 279.6 186 74.2
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 6.0e-73 278.1 198 69.7
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 7.9e-73 277.7 191 72.3
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 1.3e-72 276.9 192 69.3
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 1.3e-72 276.9 199 67.8
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 1.3e-72 276.9 198 67.7
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 2.3e-72 276.2 198 65.7
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 3.9e-72 275.4 197 65.0
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 3.9e-72 275.4 199 67.3
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 1.5e-71 273.5 198 63.6
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 2.5e-71 272.7 196 69.4
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 2.8e-70 269.2 187 68.4
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 2.6e-68 262.7 178 69.7
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 4.5e-68 261.9 198 63.1
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 7.6e-68 261.2 196 63.8
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 3.2e-66 255.8 183 67.2
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 1.5e-63 246.9 198 59.6
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 3.1e-61 239.2 196 59.7
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 2.6e-60 236.1 187 56.7
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 1.7e-59 233.4 183 60.1
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 1.1e-58 230.7 170 67.1
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 1.4e-58 230.3 169 65.1
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 2.7e-57 226.1 143 73.4
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 7.9e-57 224.6 144 72.9
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 2.3e-56 223.0 155 68.4
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 2.3e-56 223.0 227 52.9
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 2.5e-55 219.5 144 67.4
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 2.5e-55 219.5 187 55.6
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 1.3e-54 217.2 144 66.0
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 2.2e-54 216.5 156 61.5
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 4.1e-53 212.2 194 53.1
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 7.9e-49 198.0 198 49.5
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 4.8e-46 188.7 198 53.5
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 9.1e-45 184.5 114 71.1
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 1.1e-42 177.6 124 68.5
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 1.6e-41 173.7 198 49.0
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 6.1e-41 171.8 98 78.6
MCO05G386 Micromonas commoda HOM05D004717 ORTHO05D005636 6.3e-38 161.8 188 46.3
PRCOL_00002165 Prasinoderma coloniale HOM05D004717 ORTHO05D005636 3.2e-34 149.4 188 48.9
Haze_27496 Corylus avellana HOM05D004717 ORTHO05D005636 4.0e-32 142.5 184 42.4
ECA247G3377 Erigeron canadensis HOM05D004717 ORTHO05D005636 1.2e-23 114.4 68 75.0
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 3.4e-23 112.8 73 63.0
Cfa021666 Carpinus fangiana HOM05D004717 ORTHO05D005636 8.3e-22 108.2 185 35.1
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 8.3e-22 108.2 106 49.1
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 2.4e-21 106.7 194 39.7
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 2.0e-20 103.6 120 45.0
AagrBONN_evm.TU.Sc2ySwM_344.2327 Anthoceros agrestis HOM05D004717 ORTHO05D005636 4.5e-20 102.4 134 43.3
AagrBONN_evm.TU.Sc2ySwM_117.4144 Anthoceros agrestis HOM05D004717 ORTHO05D005636 1.5e-18 97.4 124 43.5
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 1.2e-17 94.4 70 58.6
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 2.8e-17 93.2 103 48.5
RhsimUnG0160700 Rhododendron simsii HOM05D004717 ORTHO05D005636 3.4e-15 86.3 58 74.1
Actinidia11311 Actinidia chinensis HOM05D004717 ORTHO05D005636 2.8e-09 66.6 55 61.8
Dinv05788 Davidia involucrata HOM05D004717 ORTHO05D005636 8.0e-09 65.1 49 73.5
Nn2g15094 Nelumbo nucifera HOM05D004717 ORTHO05D005636 2.2e-06 57.0 44 59.1


User provided reference genes

Program Settings