Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 8.1e-177 623.6 315 100.0
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 3.7e-169 598.2 314 95.2
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 2.9e-158 562.0 340 84.7
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 6.3e-153 544.3 313 85.6
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 1.1e-133 480.3 314 73.2
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 2.4e-128 462.6 313 71.6
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 2.7e-127 459.1 348 67.0
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 3.5e-127 458.8 314 72.3
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 2.2e-126 456.1 316 70.6
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 1.5e-125 453.4 316 69.3
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 3.2e-125 452.2 313 70.6
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 4.2e-125 451.8 314 70.7
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 7.2e-125 451.1 312 70.5
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 9.4e-125 450.7 316 70.6
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.2e-124 450.3 314 70.7
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 1.2e-124 450.3 312 68.9
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.6e-124 449.9 314 70.7
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.6e-124 449.9 314 70.4
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 2.1e-124 449.5 314 70.7
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 2.7e-124 449.1 316 70.3
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 3.6e-124 448.7 313 69.6
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 4.7e-124 448.4 314 70.7
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 4.7e-124 448.4 313 70.0
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 8.0e-124 447.6 314 70.7
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 1.4e-123 446.8 316 68.7
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 1.4e-123 446.8 310 69.7
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 1.8e-123 446.4 316 70.3
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 2.3e-123 446.0 313 70.0
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 3.0e-123 445.7 313 70.0
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 5.2e-123 444.9 314 67.5
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 5.2e-123 444.9 317 70.0
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 2.6e-122 442.6 317 69.7
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 7.5e-122 441.0 311 68.2
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 2.8e-121 439.1 318 67.9
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 2.8e-121 439.1 315 69.2
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 4.8e-121 438.3 322 67.7
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 4.8e-121 438.3 316 69.0
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 6.3e-121 438.0 317 69.1
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 1.4e-120 436.8 322 67.4
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 3.1e-120 435.6 316 67.4
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 4.1e-120 435.3 317 67.8
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 4.1e-120 435.3 312 66.3
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 7.0e-120 434.5 321 66.4
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 9.1e-120 434.1 315 66.7
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 2.0e-119 433.0 315 67.3
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 4.5e-119 431.8 316 66.8
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 4.5e-119 431.8 316 66.8
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 5.9e-119 431.4 316 66.5
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 2.3e-118 429.5 316 66.5
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 2.9e-118 429.1 313 67.4
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 5.0e-118 428.3 314 67.2
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 1.9e-117 426.4 314 66.2
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 1.9e-117 426.4 320 65.9
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 3.2e-117 425.6 316 64.6
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 4.2e-117 425.2 312 66.3
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 4.2e-117 425.2 313 66.8
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 5.5e-117 424.9 311 67.2
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 1.6e-116 423.3 315 66.3
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 1.6e-116 423.3 322 64.6
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 6.1e-116 421.4 322 64.6
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 6.1e-116 421.4 317 65.3
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 1.0e-115 420.6 314 66.6
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 1.4e-115 420.2 313 64.2
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 2.3e-115 419.5 314 67.2
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 3.0e-115 419.1 318 65.1
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 5.2e-115 418.3 315 63.2
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 1.2e-114 417.2 315 65.1
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 1.2e-114 417.2 312 66.0
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 1.5e-114 416.8 317 65.3
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 1.5e-114 416.8 315 63.8
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 3.4e-114 415.6 311 65.9
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 7.5e-114 414.5 310 67.1
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 9.8e-114 414.1 315 64.4
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 9.8e-114 414.1 315 64.1
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 4.9e-113 411.8 325 63.4
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 1.1e-112 410.6 311 64.0
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 1.8e-112 409.8 314 64.6
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 5.4e-112 408.3 314 63.4
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 7.0e-112 407.9 313 62.6
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 7.0e-112 407.9 312 64.4
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 1.2e-111 407.1 368 56.5
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 2.0e-111 406.4 317 65.3
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 4.5e-111 405.2 317 65.3
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 4.5e-111 405.2 317 65.0
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 5.9e-111 404.8 318 65.1
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 1.0e-110 404.1 317 64.4
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 2.5e-109 399.4 305 65.6
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 4.7e-108 395.2 329 62.0
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 8.0e-108 394.4 333 59.5
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 1.0e-107 394.0 295 63.7
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 1.5e-106 390.2 260 73.1
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 2.6e-106 389.4 313 60.1
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 2.6e-106 389.4 311 62.4
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 5.7e-106 388.3 293 64.5
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 3.0e-102 375.9 280 65.0
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 8.6e-102 374.4 273 64.8
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 4.3e-101 372.1 314 58.0
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 3.4e-98 362.5 279 64.5
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 5.8e-98 361.7 241 74.3
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 4.9e-97 358.6 239 72.8
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 1.2e-92 344.0 236 72.0
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 1.2e-90 337.4 239 67.4
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 3.2e-88 329.3 230 66.5
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 7.1e-88 328.2 307 53.7
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 2.5e-85 319.7 315 50.8
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 1.6e-84 317.0 238 67.2
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 1.1e-80 304.3 203 72.9
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 2.3e-78 296.6 231 61.9
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 3.9e-78 295.8 329 49.2
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 4.7e-76 288.9 310 51.0
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 1.5e-74 283.9 241 63.9
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 2.9e-73 279.6 238 61.8
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 1.7e-65 253.8 188 66.5
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 2.2e-65 253.4 302 44.4
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 7.4e-61 238.4 189 59.3
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 7.1e-56 221.9 179 64.2
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 3.8e-49 199.5 132 71.2
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 4.6e-47 192.6 325 40.0
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 6.0e-47 192.2 316 39.9
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 2.3e-38 163.7 320 35.9
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 3.0e-38 163.3 117 66.7
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 9.1e-35 151.8 107 71.0
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 2.2e-33 147.1 122 57.4
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 2.5e-32 143.7 105 70.5
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 3.2e-32 143.3 111 63.1
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 3.2e-32 143.3 111 63.1
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 3.2e-32 143.3 111 63.1
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 5.7e-29 132.5 126 53.2
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 7.0e-27 125.6 94 61.7
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 2.2e-25 120.6 90 62.2
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 1.4e-22 111.3 79 70.9
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 5.2e-22 109.4 81 69.1
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 1.5e-16 91.3 75 58.7
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 1.3e-12 78.2 89 49.4
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 2.2e-12 77.4 52 61.5
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 1.1e-11 75.1 57 56.1
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 5.3e-11 72.8 60 60.0
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 5.3e-11 72.8 60 60.0


User provided reference genes

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