Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G005460 Cucumis sativus L. HOM05D006658 ORTHO05D008515 1.5e-212 742.7 391 100.0
MELO3C021391.2 Cucumis melo HOM05D006658 ORTHO05D008515 3.3e-204 714.9 391 96.2
ClCG06G005690 Citrullus lanatus HOM05D006658 ORTHO05D008515 7.2e-199 697.2 391 94.4
Sed0019307 Sechium edule HOM05D006658 ORTHO05D008515 8.8e-181 637.1 391 86.7
CiPaw.02G090200 Carya illinoinensis HOM05D006658 ORTHO05D008515 1.6e-142 510.0 391 68.3
Haze_00994 Corylus avellana HOM05D006658 ORTHO05D008515 2.8e-142 509.2 391 67.5
Cfa015553 Carpinus fangiana HOM05D006658 ORTHO05D008515 8.1e-142 507.7 391 67.3
TAR365G0289 Trochodendron aralioides HOM05D006658 ORTHO05D008515 1.4e-138 496.9 345 72.5
QL06p005937 Quercus lobata HOM05D006658 ORTHO05D008515 1.6e-137 493.4 339 75.2
GSVIVG01017866001 Vitis vinifera HOM05D006658 ORTHO05D008515 3.9e-136 488.8 402 64.7
Potri.008G199900 Populus trichocarpa HOM05D006658 ORTHO05D008515 1.6e-134 483.4 391 65.5
Manes.15G021400 Manihot esculenta HOM05D006658 ORTHO05D008515 3.6e-134 482.3 389 66.8
arahy.Tifrunner.gnm1.ann1.V9Y9T8 Arachis hypogaea HOM05D006658 ORTHO05D008515 1.1e-133 480.7 386 64.5
CANSAT78G1897 Cannabis sativa HOM05D006658 ORTHO05D008515 1.4e-133 480.3 334 73.4
MD13G1180000 Malus domestica HOM05D006658 ORTHO05D008515 2.6e-132 476.1 370 67.3
Eucgr.E03351 Eucalyptus grandis HOM05D006658 ORTHO05D008515 1.7e-131 473.4 338 69.8
Ciclev10005116m.g Citrus clementina HOM05D006658 ORTHO05D008515 6.4e-131 471.5 400 63.0
vmacro15292 Vaccinium macrocarpon HOM05D006658 ORTHO05D008515 6.4e-131 471.5 322 72.7
Rhsim02G0017700 Rhododendron simsii HOM05D006658 ORTHO05D008515 1.4e-130 470.3 322 73.0
arahy.Tifrunner.gnm1.ann1.Q3CYV3 Arachis hypogaea HOM05D006658 ORTHO05D008515 4.2e-130 468.8 388 63.4
Lalb_Chr15g0087271 Lupinus albus HOM05D006658 ORTHO05D008515 1.2e-129 467.2 387 64.3
Sabra08G0161000 Salix brachista HOM05D006658 ORTHO05D008515 2.1e-129 466.5 403 63.3
VMungo0540G0090 Vigna mungo HOM05D006658 ORTHO05D008515 2.1e-129 466.5 394 63.5
Phvul.006G155900 Phaseolus vulgaris HOM05D006658 ORTHO05D008515 2.7e-129 466.1 394 62.7
Dinv38362 Davidia involucrata HOM05D006658 ORTHO05D008515 3.5e-129 465.7 331 71.0
Aqoxy2G03225 Aquilegia oxysepala HOM05D006658 ORTHO05D008515 4.6e-129 465.3 346 68.5
Prupe.1G148500 Prunus persica HOM05D006658 ORTHO05D008515 7.8e-129 464.5 370 67.0
Gorai.006G218300 Gossypium raimondii HOM05D006658 ORTHO05D008515 1.7e-128 463.4 337 69.1
RcHm_v2.0_Chr4g0419051 Rosa chinensis HOM05D006658 ORTHO05D008515 2.3e-128 463.0 335 69.9
HanXRQChr12g0359491 Helianthus annuus HOM05D006658 ORTHO05D008515 3.0e-128 462.6 344 68.6
Medtr2g021220 Medicago truncatula HOM05D006658 ORTHO05D008515 3.9e-128 462.2 393 63.1
PGR065G0004 Punica granatum HOM05D006658 ORTHO05D008515 5.1e-128 461.8 365 66.0
Glyma.15G101900 Glycine max HOM05D006658 ORTHO05D008515 6.6e-128 461.5 392 61.7
TWI53G0915 Tripterygium wilfordii HOM05D006658 ORTHO05D008515 6.6e-128 461.5 338 69.5
FvH4_4g14170 Fragaria vesca HOM05D006658 ORTHO05D008515 8.7e-128 461.1 333 69.4
FAN12G0854 Fragaria x ananassa HOM05D006658 ORTHO05D008515 8.7e-128 461.1 340 68.8
Lsat_1_v5_gn_5_165480 Lactuca sativa HOM05D006658 ORTHO05D008515 1.9e-127 459.9 331 70.1
Thecc.04G218900 Theobroma cacao HOM05D006658 ORTHO05D008515 3.3e-127 459.1 336 69.0
Atru.chr4.2671 Acer truncatum HOM05D006658 ORTHO05D008515 4.3e-127 458.8 391 61.6
Actinidia00076 Actinidia chinensis HOM05D006658 ORTHO05D008515 7.3e-127 458.0 314 72.6
Ca_00605_v3 Cicer arietinum L. HOM05D000887 ORTHO05D000908 7.3e-127 458.0 336 68.2
Lj6g0017983 Lotus japonicus HOM05D006658 ORTHO05D008515 7.3e-127 458.0 336 69.0
MBI17_g29609_MAGBIO Magnolia biondii HOM05D006658 ORTHO05D008515 9.6e-127 457.6 371 66.3
PSO170G4721 Papaver somniferum HOM05D006658 ORTHO05D008515 2.8e-126 456.1 339 68.7
Cpa.g.sc16.52 Carica papaya HOM05D006658 ORTHO05D008515 4.8e-126 455.3 372 65.3
PSO407G0441 Papaver somniferum HOM05D006658 ORTHO05D008515 4.0e-125 452.2 317 71.9
Cc03_g02920 Coffea canephora HOM05D006658 ORTHO05D008515 1.2e-124 450.7 378 63.0
Sc13g0003830 Simmondsia chinensis HOM05D006658 ORTHO05D008515 1.5e-124 450.3 370 61.6
TPR.G28916 Trifolium pratense HOM05D000887 ORTHO05D000908 1.4e-122 443.7 393 61.6
CARHR097540 Cardamine hirsuta HOM05D006658 ORTHO05D008515 7.9e-121 438.0 336 64.6
Carub.0003s2162 Capsella rubella HOM05D006658 ORTHO05D008515 1.3e-120 437.2 336 65.2
FAN07G2752 Fragaria x ananassa HOM05D006658 ORTHO05D008515 2.3e-120 436.4 364 62.9
AT3G21580 Arabidopsis thaliana HOM05D006658 ORTHO05D008515 2.5e-119 433.0 336 64.6
Os05g0400600 Oryza sativa ssp. japonica HOM05D006658 ORTHO05D008515 4.3e-119 432.2 320 65.3
AL3G35700 Arabidopsis lyrata HOM05D006658 ORTHO05D008515 1.3e-118 430.6 375 59.7
BcaB04g19174 Brassica carinata HOM05D006658 ORTHO05D008515 1.3e-118 430.6 340 63.8
Thhalv10020897m.g Eutrema salsugineum HOM05D006658 ORTHO05D008515 1.3e-118 430.6 373 60.1
THA.LOC104820222 Tarenaya hassleriana HOM05D006658 ORTHO05D008515 1.6e-118 430.3 336 65.8
A03p42320 Brassica napus HOM05D006658 ORTHO05D008515 2.1e-118 429.9 381 59.6
BraA03t13384Z Brassica rapa HOM05D006658 ORTHO05D008515 2.1e-118 429.9 381 59.6
Aa31sc174G10 Aethionema arabicum HOM05D006658 ORTHO05D008515 3.6e-118 429.1 336 63.4
Sp3g19610 Schrenkiella parvula HOM05D006658 ORTHO05D008515 4.8e-118 428.7 337 64.4
MSTRG.24762 Avicennia marina HOM05D006658 ORTHO05D008515 6.2e-118 428.3 329 63.5
Zm00001eb346810 Zea mays HOM05D006658 ORTHO05D008515 6.2e-118 428.3 323 65.3
BcaC01g03498 Brassica carinata HOM05D006658 ORTHO05D008515 2.4e-117 426.4 340 64.4
COL.COLO4_21620 Corchorus olitorius HOM05D006658 ORTHO05D008515 9.0e-117 424.5 337 66.8
SalBow5G3198 Salvia bowleyana HOM05D006658 ORTHO05D008515 2.6e-116 422.9 308 68.2
Solyc01g080300.4 Solanum lycopersicum HOM05D006658 ORTHO05D008515 7.6e-116 421.4 380 59.5
PGSC0003DMG400004353 Solanum tuberosum HOM05D006658 ORTHO05D008515 7.6e-116 421.4 322 65.5
Migut.N00139 Erythranthe guttata HOM05D006658 ORTHO05D008515 1.3e-115 420.6 329 62.9
DCAR_027140 Daucus carota HOM05D006658 ORTHO05D008515 1.7e-115 420.2 295 71.5
Sopen01g032090 Solanum pennellii HOM05D006658 ORTHO05D008515 3.8e-115 419.1 335 63.9
BolC3t17462H Brassica oleracea HOM05D006658 ORTHO05D008515 1.1e-114 417.5 340 63.5
C03p51780 Brassica napus HOM05D006658 ORTHO05D008515 2.4e-114 416.4 340 63.2
CAN.G522.10 Capsicum annuum HOM05D006658 ORTHO05D008515 7.1e-114 414.8 337 63.5
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 2.1e-113 413.3 326 65.0
HPP92_001401 Vanilla planifolia HOM05D006658 ORTHO05D008515 2.1e-113 413.3 322 63.7
Duzib212G0844 Durio zibethinus HOM05D006658 ORTHO05D008515 7.9e-113 411.4 286 70.6
Nn4g26153 Nelumbo nucifera HOM05D006658 ORTHO05D008515 1.3e-112 410.6 379 58.6
SGA_v2.0_scaffold107G30765 Striga asiatica HOM05D006658 ORTHO05D008515 3.0e-112 409.5 331 61.3
Nitab4.5_0003070g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008515 5.1e-112 408.7 376 58.2
ATR0626G018 Amborella trichopoda HOM05D006658 ORTHO05D007095 1.5e-111 407.1 292 70.2
EL10Ac4g08937 Beta vulgaris HOM05D006658 ORTHO05D008515 1.3e-110 404.1 337 63.2
Psat5g176560 Pisum sativum HOM05D006658 ORTHO05D008515 6.2e-110 401.7 410 54.4
Gohir.D09G194900 Gossypium hirsutum HOM05D006658 ORTHO05D008515 1.2e-108 397.5 337 62.0
Gohir.A09G200700 Gossypium hirsutum HOM05D006658 ORTHO05D008515 2.6e-108 396.4 407 56.0
SEGI_40702 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 1.4e-106 390.6 323 60.7
FAN22G2256 Fragaria x ananassa HOM05D006658 ORTHO05D008515 5.1e-104 382.1 256 74.2
PGR004G0022 Punica granatum HOM05D006658 ORTHO05D008515 1.1e-103 380.9 306 65.7
CDE02G1914 Ceratophyllum demersum HOM05D006658 ORTHO05D008515 2.3e-96 356.7 321 57.9
RcHm_v2.0_Chr2g0086241 Rosa chinensis HOM05D006658 ORTHO05D008515 1.9e-95 353.6 285 64.6
CSS0022396 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 2.5e-95 353.2 246 70.7
ECA234G3592 Erigeron canadensis HOM05D006658 ORTHO05D008515 1.4e-93 347.4 228 75.0
AUR62004779 Chenopodium quinoa HOM05D006658 ORTHO05D008515 7.2e-90 335.1 329 56.5
Mapoly0015s0173 Marchantia polymorpha HOM05D006658 ORTHO05D008515 2.7e-89 333.2 304 53.9
Glyma.13G210900 Glycine max HOM05D006658 ORTHO05D008515 6.1e-89 332.0 319 57.1
Pp3c16_5660 Physcomitrium patens HOM05D006658 ORTHO05D008515 1.5e-87 327.4 342 49.1
Ah.06g191650 Amaranthus hybridus HOM05D006658 ORTHO05D008515 2.5e-87 326.6 268 63.8
unitig_61.g26008 Utricularia gibba HOM05D006658 ORTHO05D008515 2.5e-87 326.6 312 54.8
SMO361G0230 Selaginella moellendorffii HOM05D006658 ORTHO05D008515 5.5e-82 308.9 362 46.4
Lj3A803G20 Lonicera japonica HOM05D006658 ORTHO05D008515 1.5e-79 300.8 248 62.9
RcHm_v2.0_Chr5g0064291 Rosa chinensis HOM05D006658 ORTHO05D008515 5.7e-79 298.9 198 74.7
AagrBONN_evm.TU.Sc2ySwM_228.2900 Anthoceros agrestis HOM05D006670 ORTHO05D008715 3.7e-78 296.2 311 49.2
Psat1g186040 Pisum sativum HOM05D006658 ORTHO05D008515 1.5e-74 284.3 188 75.0
AUR62003399 Chenopodium quinoa HOM05D006658 ORTHO05D008515 9.4e-74 281.6 271 57.9
CDE09G1086 Ceratophyllum demersum HOM05D002356 ORTHO05D002546 1.2e-73 281.2 250 58.4
RcHm_v2.0_Chr5g0045591 Rosa chinensis HOM05D006658 ORTHO05D008515 1.3e-67 261.2 179 72.6
CSS0004357 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 2.7e-65 253.4 228 58.3
Manes.07G121800 Manihot esculenta HOM05D006658 ORTHO05D008515 3.7e-62 243.0 159 76.7
Nn1g02127 Nelumbo nucifera HOM05D006658 ORTHO05D008515 3.5e-60 236.5 200 62.5
Hund26050 Selenicereus undatus HOM05D006658 ORTHO05D008515 1.0e-59 235.0 244 54.5
Cre12.g533950 Chlamydomonas reinhardtii HOM05D006658 ORTHO05D008515 3.2e-58 229.9 290 42.4
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 3.8e-51 206.5 307 44.3
PRCOL_00004089 Prasinoderma coloniale HOM05D006658 ORTHO05D008515 3.0e-48 196.8 270 41.9
SEGI_22040 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 2.5e-42 177.2 137 65.7
MCO01G250 Micromonas commoda HOM05D006658 ORTHO05D008515 8.0e-41 172.2 297 34.0
HPP92_001340 Vanilla planifolia HOM05D006658 ORTHO05D008515 1.2e-31 141.7 105 64.8
Psat2g070960 Pisum sativum HOM05D006658 ORTHO05D008515 1.7e-30 137.9 233 39.5
Peaxi162Scf00095g00724 Petunia axillaris HOM05D006658 ORTHO05D008515 2.3e-27 127.5 129 52.7
Oeu023652.1 Olea europaea HOM05D006658 ORTHO05D008515 5.2e-24 116.3 229 38.4
Actinidia32371 Actinidia chinensis HOM05D006658 ORTHO05D008515 6.8e-24 115.9 83 75.9
Actinidia08452 Actinidia chinensis HOM05D006658 ORTHO05D008515 8.4e-22 109.0 83 71.1
HanXRQChr09g0256171 Helianthus annuus HOM05D006658 ORTHO05D008515 8.4e-14 82.4 62 64.5
Oeu037664.1 Olea europaea HOM05D006658 ORTHO05D008515 6.0e-12 76.3 53 60.4
HanXRQChr04g0123631 Helianthus annuus HOM05D034347 ORTHO05D227534 8.1e-09 65.9 46 69.6


User provided reference genes

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