Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G005160 Cucumis sativus L. HOM05D006151 ORTHO05D007487 3.7e-108 395.2 245 100.0
MELO3C008336.2 Cucumis melo HOM05D006151 ORTHO05D007487 2.0e-98 362.8 232 81.9
ClCG08G007050 Citrullus lanatus HOM05D006151 ORTHO05D007487 6.7e-94 347.8 228 78.1
Sed0016357 Sechium edule HOM05D006151 ORTHO05D007487 8.5e-73 277.7 233 65.2
Sed0009804 Sechium edule HOM05D006151 ORTHO05D007487 1.4e-70 270.4 227 65.6
Duzib116G0486 Durio zibethinus HOM05D006151 ORTHO05D007487 3.6e-55 219.2 230 53.5
CANSAT25G1414 Cannabis sativa HOM05D006151 ORTHO05D007487 4.0e-54 215.7 230 53.5
Cfa018318 Carpinus fangiana HOM05D006151 ORTHO05D007487 3.4e-53 212.6 194 57.7
Thecc.08G153600 Theobroma cacao HOM05D006151 ORTHO05D007487 5.7e-53 211.8 222 53.6
Dinv25871 Davidia involucrata HOM05D006151 ORTHO05D007487 7.5e-53 211.5 207 56.5
Duzib041G0750 Durio zibethinus HOM05D006151 ORTHO05D007487 1.4e-51 207.2 236 50.4
GSVIVG01034539001 Vitis vinifera HOM05D006151 ORTHO05D007487 1.4e-51 207.2 229 52.8
COL.COLO4_04528 Corchorus olitorius HOM05D006151 ORTHO05D007487 3.1e-51 206.1 237 50.2
Actinidia04761 Actinidia chinensis HOM05D006151 ORTHO05D007487 1.2e-50 204.1 196 56.1
Cpa.g.sc21.206 Carica papaya HOM05D006151 ORTHO05D007487 1.6e-50 203.8 241 51.0
Gorai.005G078700 Gossypium raimondii HOM05D006151 ORTHO05D007487 1.6e-50 203.8 229 52.0
CSS0023884 Camellia sinensis var. sinensis HOM05D006151 ORTHO05D007487 2.7e-50 203.0 230 52.2
TAR628G1632 Trochodendron aralioides HOM05D006151 ORTHO05D007487 2.7e-50 203.0 226 54.9
TAR381G1121 Trochodendron aralioides HOM05D006151 ORTHO05D007487 3.5e-50 202.6 204 51.0
Ciclev10002306m.g Citrus clementina HOM05D006151 ORTHO05D007487 5.9e-50 201.8 227 52.0
Hma1.2p1_0105F.1_g050630 Hydrangea macrophylla HOM05D006151 ORTHO05D007487 5.9e-50 201.8 206 61.7
Atru.chr13.2098 Acer truncatum HOM05D006151 ORTHO05D007487 7.8e-50 201.4 228 52.6
CAN.G268.27 Capsicum annuum HOM05D006151 ORTHO05D007487 1.3e-49 200.7 209 52.2
Gohir.D02G069400 Gossypium hirsutum HOM05D006151 ORTHO05D007487 1.3e-49 200.7 229 51.5
Duzib093G0584 Durio zibethinus HOM05D006151 ORTHO05D007487 2.3e-49 199.9 232 50.9
Manes.02G180000 Manihot esculenta HOM05D006151 ORTHO05D007487 5.0e-49 198.7 229 49.8
Nitab4.5_0001062g0090 Nicotiana tabacum HOM05D006151 ORTHO05D007487 1.1e-48 197.6 203 52.7
Lj5g0026688 Lotus japonicus HOM05D006151 ORTHO05D007487 1.9e-48 196.8 234 49.6
Potri.002G067600 Populus trichocarpa HOM05D006151 ORTHO05D007487 1.9e-48 196.8 225 50.7
Gohir.A02G063800 Gossypium hirsutum HOM05D006151 ORTHO05D007487 2.5e-48 196.4 207 52.2
Lalb_Chr06g0161651 Lupinus albus HOM05D006151 ORTHO05D007487 3.3e-48 196.1 231 51.9
Eucgr.F04235 Eucalyptus grandis HOM05D006151 ORTHO05D007487 7.3e-48 194.9 238 47.9
PGSC0003DMG400024091 Solanum tuberosum HOM05D006151 ORTHO05D007487 7.3e-48 194.9 223 49.3
PSO447G0272 Papaver somniferum HOM05D006151 ORTHO05D007487 1.6e-47 193.7 233 44.2
Solyc04g071500.4 Solanum lycopersicum HOM05D006151 ORTHO05D007487 1.6e-47 193.7 223 49.8
Sopen04g027470 Solanum pennellii HOM05D006151 ORTHO05D007487 1.6e-47 193.7 223 49.3
Peaxi162Scf00599g00048 Petunia axillaris HOM05D006151 ORTHO05D007487 2.1e-47 193.4 205 51.2
Potri.005G192800 Populus trichocarpa HOM05D006151 ORTHO05D007487 3.6e-47 192.6 209 53.1
PSO210G3290 Papaver somniferum HOM05D006151 ORTHO05D007487 4.7e-47 192.2 233 43.8
Rhsim11G0083500 Rhododendron simsii HOM05D006151 ORTHO05D007487 4.7e-47 192.2 207 52.2
Gohir.D05G244900 Gossypium hirsutum HOM05D006151 ORTHO05D007487 6.1e-47 191.8 237 48.9
Nitab4.5_0009071g0020 Nicotiana tabacum HOM05D006151 ORTHO05D007487 1.0e-46 191.0 213 50.7
Nn5g28758 Nelumbo nucifera HOM05D006151 ORTHO05D007487 1.8e-46 190.3 225 45.8
Cc10_g14430 Coffea canephora HOM05D006151 ORTHO05D007487 2.3e-46 189.9 223 49.3
RcHm_v2.0_Chr6g0275291 Rosa chinensis HOM05D006151 ORTHO05D007487 5.2e-46 188.7 231 48.5
FAN24G0867 Fragaria x ananassa HOM05D006151 ORTHO05D007487 6.8e-46 188.3 228 47.8
FAN15G1313 Fragaria x ananassa HOM05D006151 ORTHO05D007487 8.9e-46 188.0 228 48.2
Manes.18G092600 Manihot esculenta HOM05D006151 ORTHO05D007487 8.9e-46 188.0 196 55.1
FAN27G2560 Fragaria x ananassa HOM05D006151 ORTHO05D007487 2.0e-45 186.8 224 48.2
TWI34G1794 Tripterygium wilfordii HOM05D006151 ORTHO05D007487 2.0e-45 186.8 226 48.2
CiPaw.15G015800 Carya illinoinensis HOM05D006151 ORTHO05D007487 2.6e-45 186.4 226 48.2
FvH4_2g13650 Fragaria vesca HOM05D006151 ORTHO05D007487 2.6e-45 186.4 228 47.4
MSTRG.1087 Avicennia marina HOM05D006151 ORTHO05D007487 4.4e-45 185.7 223 50.2
FAN20G0746 Fragaria x ananassa HOM05D006151 ORTHO05D007487 4.4e-45 185.7 228 48.2
Glyma.20G168200 Glycine max HOM05D006151 ORTHO05D007487 9.8e-45 184.5 228 49.1
QL02p039028 Quercus lobata HOM05D006151 ORTHO05D007487 3.7e-44 182.6 223 52.5
Glyma.10G223700 Glycine max HOM05D006151 ORTHO05D007487 4.9e-44 182.2 221 52.0
Oeu046040.1 Olea europaea HOM05D006151 ORTHO05D007487 8.3e-44 181.4 229 47.6
DCAR_001140 Daucus carota HOM05D006151 ORTHO05D007487 1.1e-43 181.0 231 45.9
Dinv41078 Davidia involucrata HOM05D006151 ORTHO05D007487 1.1e-43 181.0 225 48.4
VMungo0720G2232 Vigna mungo HOM05D006151 ORTHO05D007487 2.4e-43 179.9 206 49.5
vmacro01457 Vaccinium macrocarpon HOM05D006151 ORTHO05D007487 3.2e-43 179.5 207 52.2
Nn1g06074 Nelumbo nucifera HOM05D006151 ORTHO05D007487 5.4e-43 178.7 208 46.2
MD05G1026900 Malus domestica HOM05D006151 ORTHO05D007487 9.2e-43 177.9 237 46.4
arahy.Tifrunner.gnm1.ann1.2F6CI2 Arachis hypogaea HOM05D006151 ORTHO05D007487 1.2e-42 177.6 211 53.1
Phvul.007G081100 Phaseolus vulgaris HOM05D006151 ORTHO05D007487 1.6e-42 177.2 225 47.1
MD10G1026200 Malus domestica HOM05D006151 ORTHO05D007487 2.7e-42 176.4 237 46.4
AT1G21090 Arabidopsis thaliana HOM05D006151 ORTHO05D007487 3.5e-42 176.0 227 46.7
CARHR021560 Cardamine hirsuta HOM05D006151 ORTHO05D007487 3.5e-42 176.0 216 47.2
Prupe.8G031400 Prunus persica HOM05D006151 ORTHO05D007487 3.5e-42 176.0 238 47.1
Gorai.009G254700 Gossypium raimondii HOM05D006151 ORTHO05D007487 1.0e-41 174.5 233 47.2
Migut.C00998 Erythranthe guttata HOM05D006151 ORTHO05D007487 1.3e-41 174.1 227 47.6
Carub.0001s2055 Capsella rubella HOM05D006151 ORTHO05D007487 2.3e-41 173.3 232 44.8
Gohir.A05G243900 Gossypium hirsutum HOM05D006151 ORTHO05D007487 3.0e-41 172.9 241 45.6
THA.LOC104813720 Tarenaya hassleriana HOM05D006151 ORTHO05D007487 3.9e-41 172.6 214 47.7
AL1G34140 Arabidopsis lyrata HOM05D006151 ORTHO05D007487 6.6e-41 171.8 228 45.2
Glyma.16G166000 Glycine max HOM05D006151 ORTHO05D007487 1.5e-40 170.6 229 47.6
AUR62026702 Chenopodium quinoa HOM05D006151 ORTHO05D007487 4.3e-40 169.1 204 46.1
AUR62013592 Chenopodium quinoa HOM05D006151 ORTHO05D007487 7.3e-40 168.3 209 45.9
Sp1g18760 Schrenkiella parvula HOM05D006151 ORTHO05D007487 1.2e-39 167.5 232 43.5
HanXRQChr05g0161971 Helianthus annuus HOM05D006151 ORTHO05D007487 4.7e-39 165.6 228 43.4
Medtr1g098580 Medicago truncatula HOM05D006151 ORTHO05D007487 1.1e-38 164.5 234 44.0
BcaB03g14281 Brassica carinata HOM05D006151 ORTHO05D007487 2.3e-38 163.3 218 46.3
Ca_10677_v3 Cicer arietinum L. HOM05D006151 ORTHO05D007487 2.3e-38 163.3 205 47.8
SGA_v2.0_scaffold24G10349 Striga asiatica HOM05D000219 ORTHO05D000226 3.1e-38 162.9 208 46.2
THA.LOC104812035 Tarenaya hassleriana HOM05D006151 ORTHO05D007487 5.2e-38 162.2 210 44.3
MBI09_g40713_MAGBIO Magnolia biondii HOM05D006151 ORTHO05D007487 6.8e-38 161.8 209 47.8
Phvul.004G093600 Phaseolus vulgaris HOM05D006151 ORTHO05D007487 6.8e-38 161.8 207 46.9
BcaB07g32102 Brassica carinata HOM05D006151 ORTHO05D007487 1.2e-37 161.0 231 42.9
VMungo0464G0684 Vigna mungo HOM05D006151 ORTHO05D007487 1.2e-37 161.0 239 43.1
PGR044G2378 Punica granatum HOM05D006151 ORTHO05D007487 1.5e-37 160.6 222 44.6
PGR100G0011 Punica granatum HOM05D006151 ORTHO05D007487 1.5e-37 160.6 222 44.6
Aqoxy5G02075 Aquilegia oxysepala HOM05D006151 ORTHO05D007487 1.3e-36 157.5 202 48.0
TWI60G0448 Tripterygium wilfordii HOM05D006151 ORTHO05D007487 1.3e-36 157.5 167 49.1
Lsat_1_v5_gn_6_100560 Lactuca sativa HOM05D006151 ORTHO05D007487 2.2e-36 156.8 252 41.7
Hund26694 Selenicereus undatus HOM05D006151 ORTHO05D007487 2.2e-36 156.8 208 43.3
Psat6g192320 Pisum sativum HOM05D006151 ORTHO05D007487 6.4e-36 155.2 229 41.5
PGR080G0005 Punica granatum HOM05D006151 ORTHO05D007487 2.4e-35 153.3 214 44.9
Peaxi162Scf01294g00115 Petunia axillaris HOM05D006151 ORTHO05D007487 7.0e-35 151.8 224 43.8
C05p19820 Brassica napus HOM05D006151 ORTHO05D007487 9.2e-35 151.4 233 42.5
BolC5t30681H Brassica oleracea HOM05D006151 ORTHO05D007487 9.2e-35 151.4 233 42.5
BraA06t24819Z Brassica rapa HOM05D006151 ORTHO05D007487 2.7e-34 149.8 233 42.1
Nitab4.5_0002487g0030 Nicotiana tabacum HOM05D006151 ORTHO05D007487 2.7e-34 149.8 189 49.2
Actinidia29533 Actinidia chinensis HOM05D006151 ORTHO05D007487 1.3e-33 147.5 106 66.0
A06p17160 Brassica napus HOM05D006151 ORTHO05D007487 1.3e-33 147.5 233 41.6
ECA246G2194 Erigeron canadensis HOM05D006151 ORTHO05D007487 8.6e-33 144.8 248 38.7
TPR.G17045 Trifolium pratense HOM05D006151 ORTHO05D007487 1.9e-32 143.7 240 40.0
EL10Ac1g01556 Beta vulgaris HOM05D006151 ORTHO05D007487 1.8e-30 137.1 190 43.2
arahy.Tifrunner.gnm1.ann1.5IW37T Arachis hypogaea HOM05D006151 ORTHO05D007487 4.0e-30 136.0 184 50.0
Aa31LG7G5240 Aethionema arabicum HOM05D006151 ORTHO05D007487 1.2e-29 134.4 136 52.2
Thhalv10008611m.g Eutrema salsugineum HOM05D006151 ORTHO05D007487 2.0e-29 133.7 230 38.7
unitig_748.g7705 Utricularia gibba HOM05D006151 ORTHO05D007487 2.9e-28 129.8 202 40.6
Hund17438 Selenicereus undatus HOM05D006151 ORTHO05D007487 3.7e-28 129.4 205 43.4
BraA07t29267Z Brassica rapa HOM05D006151 ORTHO05D007487 1.1e-27 127.9 142 50.7
A07p15290 Brassica napus HOM05D006151 ORTHO05D007487 4.1e-27 125.9 140 50.7
BcaC06g34887 Brassica carinata HOM05D006151 ORTHO05D007487 2.7e-26 123.2 142 48.6
BolC7t42748H Brassica oleracea HOM05D006151 ORTHO05D007487 2.7e-26 123.2 142 48.6
C07p22470 Brassica napus HOM05D006151 ORTHO05D007487 6.0e-26 122.1 142 48.6
BcaC05g26017 Brassica carinata HOM05D006151 ORTHO05D007487 5.1e-25 119.0 198 40.9
HPP92_004418 Vanilla planifolia HOM05D006151 ORTHO05D007487 3.4e-21 106.3 199 33.7
Nitab4.5_0010143g0010 Nicotiana tabacum HOM05D006151 ORTHO05D007487 6.4e-20 102.1 207 39.1
Ah.05g167920 Amaranthus hybridus HOM05D006151 ORTHO05D007487 7.1e-19 98.6 208 34.1
Lj7C374T8 Lonicera japonica HOM05D006151 ORTHO05D007487 5.6e-16 89.0 153 39.9
CDE08G0602 Ceratophyllum demersum HOM05D006151 ORTHO05D007487 2.1e-15 87.0 179 35.8
Sc02g0004030 Simmondsia chinensis HOM05D006151 ORTHO05D007487 3.3e-08 63.2 128 35.2
Peaxi162Scf00476g00615 Petunia axillaris HOM05D002901 ORTHO05D003183 7.3e-08 62.0 86 44.2
Nn1g02131 Nelumbo nucifera HOM05D006151 ORTHO05D007487 2.1e-07 60.5 148 35.8
AUR62044379 Chenopodium quinoa HOM05D006151 ORTHO05D007487 1.4e-06 57.8 38 73.7


User provided reference genes

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