Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G005040 Cucumis sativus L. HOM05D003947 ORTHO05D004614 1.0e-111 406.8 206 100.0
MELO3C008326.2 Cucumis melo HOM05D003947 ORTHO05D004614 9.6e-110 400.2 206 98.5
ClCG08G007400 Citrullus lanatus HOM05D003947 ORTHO05D004614 4.6e-96 354.8 206 88.3
Sed0006124 Sechium edule HOM05D003947 ORTHO05D004614 1.9e-70 269.6 171 78.9
Sed0022469 Sechium edule HOM05D003947 ORTHO05D004614 3.6e-64 248.8 172 78.5
Cfa018286 Carpinus fangiana HOM05D003947 ORTHO05D004614 2.0e-46 189.9 211 55.9
CiPaw.15G012800 Carya illinoinensis HOM05D003947 ORTHO05D004614 2.0e-46 189.9 212 56.6
MD10G1033900 Malus domestica HOM05D003947 ORTHO05D004614 5.7e-46 188.3 211 54.5
MD05G1032900 Malus domestica HOM05D003947 ORTHO05D004614 7.5e-46 188.0 211 53.6
Prupe.8G040000 Prunus persica HOM05D003947 ORTHO05D004614 9.7e-46 187.6 211 55.5
TWI32G0514 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 1.6e-43 180.3 211 54.5
Eucgr.F04191 Eucalyptus grandis HOM05D003947 ORTHO05D004614 3.5e-43 179.1 211 53.1
TWI60G0849 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 4.5e-43 178.7 211 53.6
Thecc.08G158700 Theobroma cacao HOM05D003947 ORTHO05D004614 1.7e-42 176.8 212 53.3
Manes.02G182900 Manihot esculenta HOM05D003947 ORTHO05D004614 2.2e-42 176.4 211 53.6
Potri.005G196300 Populus trichocarpa HOM05D003947 ORTHO05D004614 2.9e-42 176.0 211 53.1
Sabra05G0149600 Salix brachista HOM05D003947 ORTHO05D004614 6.5e-42 174.9 211 52.1
CANSAT25G3237 Cannabis sativa HOM05D003947 ORTHO05D004614 2.5e-41 172.9 213 53.5
Glyma.20G169600 Glycine max HOM05D003947 ORTHO05D004614 7.2e-41 171.4 212 50.9
Sabra02G0051800 Salix brachista HOM05D003947 ORTHO05D004614 7.2e-41 171.4 211 51.7
Potri.002G064900 Populus trichocarpa HOM05D003947 ORTHO05D004614 2.7e-40 169.5 212 51.9
Psat6g190840 Pisum sativum HOM05D003947 ORTHO05D004614 3.6e-40 169.1 212 50.0
Glyma.10G221900 Glycine max HOM05D003947 ORTHO05D004614 6.1e-40 168.3 212 50.5
VMungo0720G0983 Vigna mungo HOM05D003947 ORTHO05D004614 6.1e-40 168.3 212 50.9
FAN27G1126 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.4e-39 167.2 212 50.5
Phvul.007G083100 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 1.4e-39 167.2 212 50.9
FvH4_2g13060 Fragaria vesca HOM05D003947 ORTHO05D004614 2.3e-39 166.4 212 50.0
Lalb_Chr21g0305571 Lupinus albus HOM05D003947 ORTHO05D004614 2.3e-39 166.4 213 52.1
Ca_10666_v3 Cicer arietinum L. HOM05D003947 ORTHO05D004614 4.0e-39 165.6 212 49.1
GSVIVG01034579001 Vitis vinifera HOM05D003947 ORTHO05D004614 5.2e-39 165.2 212 52.4
Haze_17801 Corylus avellana HOM05D003947 ORTHO05D004614 8.8e-39 164.5 187 55.1
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 8.8e-39 164.5 211 49.3
arahy.Tifrunner.gnm1.ann1.8MR9WY Arachis hypogaea HOM05D003947 ORTHO05D004614 1.2e-38 164.1 212 51.4
arahy.Tifrunner.gnm1.ann1.H1TMWI Arachis hypogaea HOM05D003947 ORTHO05D004614 2.0e-38 163.3 212 50.5
CiPaw.16G008700 Carya illinoinensis HOM05D003947 ORTHO05D004614 2.0e-38 163.3 211 51.7
Manes.18G094500 Manihot esculenta HOM05D003947 ORTHO05D004614 2.0e-38 163.3 211 50.2
Duzib116G0212 Durio zibethinus HOM05D003947 ORTHO05D004614 2.6e-38 162.9 212 50.5
RcHm_v2.0_Chr6g0274321 Rosa chinensis HOM05D003947 ORTHO05D004614 2.6e-38 162.9 212 50.5
Gorai.005G077400 Gossypium raimondii HOM05D003947 ORTHO05D004614 3.4e-38 162.5 214 51.9
Gohir.A02G062801 Gossypium hirsutum HOM05D003947 ORTHO05D004614 4.4e-38 162.2 214 51.9
Actinidia29546 Actinidia chinensis HOM05D003947 ORTHO05D004614 7.5e-38 161.4 214 49.5
Gohir.D02G068500 Gossypium hirsutum HOM05D003947 ORTHO05D004614 9.8e-38 161.0 214 51.4
QL02p038162 Quercus lobata HOM05D003947 ORTHO05D004614 1.3e-37 160.6 187 54.0
CSS0022992 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 2.8e-37 159.5 214 48.6
Dinv41043 Davidia involucrata HOM05D003947 ORTHO05D004614 2.8e-37 159.5 215 49.8
arahy.Tifrunner.gnm1.ann1.2W58SS Arachis hypogaea HOM05D003947 ORTHO05D004614 3.7e-37 159.1 212 50.0
Atru.chr13.2012 Acer truncatum HOM05D003947 ORTHO05D004614 1.1e-36 157.5 216 51.9
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.4e-36 157.1 207 49.3
Duzib093G0177 Durio zibethinus HOM05D003947 ORTHO05D004614 1.8e-36 156.8 212 49.5
Hma1.2p1_0358F.1_g134715 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 1.8e-36 156.8 216 48.1
Lj5g0019118 Lotus japonicus HOM05D003947 ORTHO05D004614 2.4e-36 156.4 217 49.8
Sed0008617 Sechium edule HOM05D003947 ORTHO05D004614 2.0e-35 153.3 213 48.8
Cpa.g.sc26.88 Carica papaya HOM05D003947 ORTHO05D004614 3.5e-35 152.5 186 52.7
Glyma.16G163700 Glycine max HOM05D003947 ORTHO05D004614 4.5e-35 152.1 212 48.6
PGR044G0664 Punica granatum HOM05D003947 ORTHO05D004614 1.3e-34 150.6 214 47.7
Lalb_Chr02g0141531 Lupinus albus HOM05D003947 ORTHO05D004614 1.7e-34 150.2 212 49.1
Gorai.009G258400 Gossypium raimondii HOM05D003947 ORTHO05D004614 2.3e-34 149.8 214 49.5
Ciclev10002453m.g Citrus clementina HOM05D003947 ORTHO05D004614 2.9e-34 149.4 217 48.4
Gohir.A05G246100 Gossypium hirsutum HOM05D003947 ORTHO05D004614 2.9e-34 149.4 214 49.5
Gohir.D05G247600 Gossypium hirsutum HOM05D003947 ORTHO05D004614 2.9e-34 149.4 214 49.5
Medtr1g098260 Medicago truncatula HOM05D003947 ORTHO05D004614 3.8e-34 149.1 234 45.7
Actinidia17770 Actinidia chinensis HOM05D003947 ORTHO05D004614 6.5e-34 148.3 212 46.7
ClCG08G003050 Citrullus lanatus HOM05D003947 ORTHO05D004614 6.5e-34 148.3 200 49.0
Cc10_g15190 Coffea canephora HOM05D003947 ORTHO05D004614 8.6e-34 147.9 211 46.9
Duzib041G0104 Durio zibethinus HOM05D003947 ORTHO05D004614 8.6e-34 147.9 188 51.1
arahy.Tifrunner.gnm1.ann1.P1AQDG Arachis hypogaea HOM05D003947 ORTHO05D004614 1.5e-33 147.1 190 51.6
Solyc04g071970.4 Solanum lycopersicum HOM05D003947 ORTHO05D004614 1.5e-33 147.1 216 47.2
Hma1.2p1_0678F.1_g202000 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 4.2e-33 145.6 215 48.8
Nitab4.5_0002812g0010 Nicotiana tabacum HOM05D003947 ORTHO05D004614 5.5e-33 145.2 216 46.8
THA.LOC104806764 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 7.2e-33 144.8 213 47.9
Sopen04g027950 Solanum pennellii HOM05D003947 ORTHO05D004614 9.5e-33 144.4 214 46.3
PSO541G4258 Papaver somniferum HOM05D003947 ORTHO05D004614 1.2e-32 144.1 210 44.3
Peaxi162Scf00360g00029 Petunia axillaris HOM05D003947 ORTHO05D004614 1.6e-32 143.7 214 46.3
Nitab4.5_0000099g0180 Nicotiana tabacum HOM05D003947 ORTHO05D004614 2.1e-32 143.3 216 46.3
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 2.8e-32 142.9 214 47.2
COL.COLO4_03360 Corchorus olitorius HOM05D003947 ORTHO05D004614 1.0e-31 141.0 188 48.4
PGSC0003DMG401025066 Solanum tuberosum HOM05D003947 ORTHO05D004614 1.0e-31 141.0 216 46.8
THA.LOC104813088 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 1.8e-31 140.2 216 46.3
Lalb_Chr19g0130101 Lupinus albus HOM05D003947 ORTHO05D004614 4.0e-31 139.0 206 45.6
Carub.0001s2230 Capsella rubella HOM05D003947 ORTHO05D004614 6.8e-31 138.3 220 43.6
Hund17479 Selenicereus undatus HOM05D003947 ORTHO05D004614 6.8e-31 138.3 209 47.8
Glyma.02G079300 Glycine max HOM05D003947 ORTHO05D004614 1.2e-30 137.5 210 45.7
PSO675G7401 Papaver somniferum HOM05D003947 ORTHO05D004614 1.5e-30 137.1 213 45.1
BcaB07g33023 Brassica carinata HOM05D030501 ORTHO05D004614 2.0e-30 136.7 215 44.7
Sp1g29270 Schrenkiella parvula HOM05D003947 ORTHO05D004614 2.0e-30 136.7 212 43.4
TAR376G1220 Trochodendron aralioides HOM05D003947 ORTHO05D004614 3.4e-30 136.0 211 44.1
AUR62034897 Chenopodium quinoa HOM05D003947 ORTHO05D004614 4.4e-30 135.6 197 47.7
Rhsim11G0087300 Rhododendron simsii HOM05D003947 ORTHO05D004614 9.8e-30 134.4 214 45.3
Actinidia04751 Actinidia chinensis HOM05D003947 ORTHO05D004614 1.3e-29 134.0 211 46.0
AL1G36340 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 1.3e-29 134.0 217 44.2
Sed0016828 Sechium edule HOM05D003947 ORTHO05D004614 1.7e-29 133.7 187 47.1
AT1G22790 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 2.2e-29 133.3 220 43.2
Sc02g0003850 Simmondsia chinensis HOM05D003947 ORTHO05D004614 3.7e-29 132.5 211 45.0
Oeu051281.1 Olea europaea HOM05D003947 ORTHO05D004614 8.3e-29 131.3 193 46.1
Aa31LG6G8230 Aethionema arabicum HOM05D003947 ORTHO05D004614 1.4e-28 130.6 217 41.5
Lj7P382T65 Lonicera japonica HOM05D003947 ORTHO05D004614 1.4e-28 130.6 191 48.7
A09p32460 Brassica napus HOM05D003947 ORTHO05D004614 3.1e-28 129.4 215 42.3
vmacro21121 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 4.1e-28 129.0 193 46.6
Aa31LG7G6750 Aethionema arabicum HOM05D003947 ORTHO05D004614 5.4e-28 128.6 213 43.2
CARHR023150 Cardamine hirsuta HOM05D003947 ORTHO05D004614 5.4e-28 128.6 230 43.9
Lj4P703T37 Lonicera japonica HOM05D003947 ORTHO05D004614 5.4e-28 128.6 216 45.8
THA.LOC104810422 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 7.0e-28 128.3 212 42.9
DCAR_001161 Daucus carota HOM05D003947 ORTHO05D004614 9.2e-28 127.9 200 46.5
Thhalv10008850m.g Eutrema salsugineum HOM05D003947 ORTHO05D004614 1.2e-27 127.5 214 43.9
Aa31LG4G8980 Aethionema arabicum HOM05D003947 ORTHO05D004614 2.7e-27 126.3 211 40.8
BolC5t32518H Brassica oleracea HOM05D003947 ORTHO05D004614 3.5e-27 125.9 213 43.2
Carub.0001s3209 Capsella rubella HOM05D003947 ORTHO05D004614 3.5e-27 125.9 217 40.6
VMungo0464G0903 Vigna mungo HOM05D003947 ORTHO05D004614 3.5e-27 125.9 187 48.1
BcaC08g43824 Brassica carinata HOM05D003947 ORTHO05D004614 4.5e-27 125.6 214 42.5
C06p12080 Brassica napus HOM05D003947 ORTHO05D004614 4.5e-27 125.6 214 42.5
BolC6t36345H Brassica oleracea HOM05D003947 ORTHO05D004614 4.5e-27 125.6 214 42.5
TAR625G1169 Trochodendron aralioides HOM05D003947 ORTHO05D004614 4.5e-27 125.6 187 45.5
MSTRG.1106 Avicennia marina HOM05D003947 ORTHO05D004614 7.8e-27 124.8 221 41.6
vmacro01489 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 7.8e-27 124.8 189 47.1
MSTRG.25300 Avicennia marina HOM05D003947 ORTHO05D004614 2.3e-26 123.2 229 42.8
HPP92_002802 Vanilla planifolia HOM05D003947 ORTHO05D004614 2.9e-26 122.9 219 41.1
AT1G34010 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 3.8e-26 122.5 215 40.5
BcaC05g27781 Brassica carinata HOM05D003947 ORTHO05D004614 3.8e-26 122.5 213 41.3
Lj2g0016258 Lotus japonicus HOM05D003947 ORTHO05D004614 5.0e-26 122.1 207 44.0
TAR628G1588 Trochodendron aralioides HOM05D003947 ORTHO05D004614 5.0e-26 122.1 188 46.3
AL1G48450 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 1.5e-25 120.6 217 41.5
CARHR033390 Cardamine hirsuta HOM05D003947 ORTHO05D004614 1.5e-25 120.6 215 41.4
Migut.C00963 Erythranthe guttata HOM05D003947 ORTHO05D004614 1.5e-25 120.6 229 43.7
Dinv25896 Davidia involucrata HOM05D003947 ORTHO05D004614 1.9e-25 120.2 211 42.7
MSTRG.24219 Avicennia marina HOM05D003947 ORTHO05D004614 2.5e-25 119.8 220 42.3
Ah.05g168170 Amaranthus hybridus HOM05D003947 ORTHO05D004614 9.5e-25 117.9 190 43.2
SalBow6G2315 Salvia bowleyana HOM05D003947 ORTHO05D004614 1.2e-24 117.5 208 42.8
Oeu002064.1 Olea europaea HOM05D003947 ORTHO05D004614 1.6e-24 117.1 194 45.4
Oeu017623.1 Olea europaea HOM05D003947 ORTHO05D004614 2.1e-24 116.7 192 43.8
A05p24080 Brassica napus HOM05D003947 ORTHO05D004614 2.8e-24 116.3 211 42.2
TAR381G1088 Trochodendron aralioides HOM05D003947 ORTHO05D004614 3.6e-24 115.9 190 44.7
CSS0014660 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 4.7e-24 115.5 211 41.7
Aqoxy6G00408 Aquilegia oxysepala HOM05D003947 ORTHO05D004614 6.1e-24 115.2 187 42.2
Nn1g06005 Nelumbo nucifera HOM05D003947 ORTHO05D004614 6.1e-24 115.2 224 38.4
SGA_v2.0_scaffold108G30867 Striga asiatica HOM05D003947 ORTHO05D004614 6.1e-24 115.2 210 42.9
HanXRQChr05g0162361 Helianthus annuus HOM05D003947 ORTHO05D004614 1.0e-23 114.4 222 41.0
MBI04_g08942_MAGBIO Magnolia biondii HOM05D003947 ORTHO05D004614 2.3e-23 113.2 191 45.5
BraA09t38788Z Brassica rapa HOM05D003947 ORTHO05D004614 5.2e-23 112.1 191 42.4
TPR.G17018 Trifolium pratense HOM05D003947 ORTHO05D004614 6.8e-23 111.7 167 44.3
Os01g0589700 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 8.9e-23 111.3 212 40.6
Hund26679 Selenicereus undatus HOM05D003947 ORTHO05D004614 2.0e-22 110.2 186 45.7
SalBow7G0665 Salvia bowleyana HOM05D003947 ORTHO05D004614 2.6e-22 109.8 194 46.4
Manes.16G051400 Manihot esculenta HOM05D003947 ORTHO05D004614 4.4e-22 109.0 153 47.7
PGR042G2534 Punica granatum HOM05D003947 ORTHO05D004614 4.4e-22 109.0 214 41.6
HanXRQChr10g0278611 Helianthus annuus HOM05D003947 ORTHO05D004614 9.8e-22 107.8 216 42.1
Oeu022056.3 Olea europaea HOM05D003947 ORTHO05D004614 3.7e-21 105.9 196 42.3
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 1.1e-20 104.4 210 41.0
Migut.N03200 Erythranthe guttata HOM05D003947 ORTHO05D004614 1.4e-20 104.0 227 38.3
Phvul.004G091200 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 2.4e-20 103.2 183 43.7
ATR1120G111 Amborella trichopoda HOM05D003947 ORTHO05D004614 3.2e-20 102.8 225 39.6
C05p37750 Brassica napus HOM05D003947 ORTHO05D004614 9.2e-20 101.3 189 40.2
unitig_32.g11256 Utricularia gibba HOM05D003947 ORTHO05D004614 9.2e-20 101.3 232 36.6
Zm00001eb160770 Zea mays HOM05D003947 ORTHO05D004614 1.2e-19 100.9 214 39.7
BcaNung06442 Brassica carinata HOM05D003947 ORTHO05D004614 4.6e-19 99.0 235 36.2
SHI09085 Sapria himalayana HOM05D003947 ORTHO05D004614 4.6e-19 99.0 189 39.2
Rhsim06G0091600 Rhododendron simsii HOM05D003947 ORTHO05D004614 6.6e-18 95.1 211 39.3
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 8.6e-18 94.7 187 41.2
PSO170G0396 Papaver somniferum HOM05D003947 ORTHO05D004614 9.5e-17 91.3 216 35.2
BraA09t39684Z Brassica rapa HOM05D003947 ORTHO05D004614 2.1e-16 90.1 230 36.5
SGA_v2.0_scaffold195G40776 Striga asiatica HOM05D003947 ORTHO05D004614 8.0e-16 88.2 193 36.3
PSO700G0284 Papaver somniferum HOM05D003947 ORTHO05D004614 2.3e-15 86.7 216 34.7
Zm00001eb357510 Zea mays HOM05D003947 ORTHO05D004614 4.0e-15 85.9 186 38.2
Lsat_1_v5_gn_9_42121 Lactuca sativa HOM05D003947 ORTHO05D004614 5.2e-15 85.5 195 37.4
Lsat_1_v5_gn_6_101640 Lactuca sativa HOM05D003947 ORTHO05D004614 7.5e-14 81.6 220 36.8
BolC5t30884H Brassica oleracea HOM05D003947 ORTHO05D004614 6.4e-13 78.6 235 35.3
Lsat_1_v5_gn_1_5261 Lactuca sativa HOM05D003947 ORTHO05D004614 6.4e-13 78.6 230 36.1
Actinidia26828 Actinidia chinensis HOM05D003947 ORTHO05D004614 1.1e-12 77.8 168 38.1
BcaNung06106 Brassica carinata HOM05D003947 ORTHO05D004614 1.1e-12 77.8 183 37.2
C05p21890 Brassica napus HOM05D003947 ORTHO05D004614 2.0e-11 73.6 181 36.5
A09p41960 Brassica napus HOM05D003947 ORTHO05D004614 2.3e-10 70.1 220 32.3
HPP92_002804 Vanilla planifolia HOM05D003947 ORTHO05D004614 7.3e-09 65.1 167 34.7
Lsat_1_v5_gn_6_55560 Lactuca sativa HOM05D007392 ORTHO05D009181 4.4e-06 55.8 58 48.3
Ciclev10017000m.g Citrus clementina HOM05D007392 ORTHO05D009181 5.8e-06 55.5 55 45.5
Carub.0001s4396 Capsella rubella HOM05D007392 ORTHO05D009181 9.9e-06 54.7 103 35.0


User provided reference genes

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