Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 1.8e-134 482.6 248 100.0
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 3.9e-118 428.3 250 89.2
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 1.2e-79 300.4 244 62.7
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 1.6e-79 300.1 238 65.1
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 1.6e-79 300.1 250 61.2
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 4.6e-74 282.0 238 62.6
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 8.1e-63 244.6 239 52.7
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 1.4e-62 243.8 248 51.6
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 1.2e-61 240.7 239 53.1
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 2.0e-61 240.0 241 50.2
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 2.0e-61 240.0 241 52.7
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 2.6e-61 239.6 239 51.5
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 5.8e-61 238.4 239 49.0
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 1.3e-60 237.3 239 51.0
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 1.3e-60 237.3 248 50.8
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 1.7e-60 236.9 243 51.0
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 4.9e-60 235.3 248 50.4
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 1.4e-59 233.8 245 48.6
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 1.9e-59 233.4 229 54.1
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 3.2e-59 232.6 244 49.6
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 9.2e-59 231.1 241 50.2
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 1.2e-58 230.7 240 51.7
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 3.5e-58 229.2 230 52.6
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 1.3e-57 227.3 244 49.2
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 3.0e-57 226.1 244 47.5
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 8.7e-57 224.6 243 48.1
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 8.7e-57 224.6 244 47.1
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 4.3e-56 222.2 245 47.3
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 2.1e-55 219.9 238 47.9
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 2.1e-55 219.9 245 46.9
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 2.8e-55 219.5 242 46.3
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 2.8e-55 219.5 260 45.0
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 3.6e-55 219.2 265 44.9
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 3.6e-55 219.2 248 47.2
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 3.6e-55 219.2 245 46.5
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 3.6e-55 219.2 245 46.5
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 4.7e-55 218.8 237 48.1
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 5.3e-54 215.3 248 47.2
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 9.0e-54 214.5 239 47.7
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 1.5e-53 213.8 240 47.9
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 2.6e-53 213.0 238 45.8
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 4.4e-53 212.2 241 46.5
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 7.6e-53 211.5 232 47.8
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 7.6e-53 211.5 250 47.2
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 2.2e-52 209.9 237 45.6
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 3.8e-52 209.1 239 44.8
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 6.4e-52 208.4 242 47.5
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 6.4e-52 208.4 220 50.0
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 8.4e-52 208.0 238 44.5
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.1e-51 207.6 248 46.0
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 9.3e-51 204.5 237 47.7
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 1.7e-49 200.3 237 43.0
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 5.1e-49 198.7 204 52.0
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 2.5e-48 196.4 210 47.6
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 3.3e-48 196.1 242 43.0
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 4.8e-47 192.2 226 46.9
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 6.2e-47 191.8 269 41.6
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 1.1e-46 191.0 246 43.1
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 1.8e-46 190.3 205 46.8
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 3.1e-46 189.5 241 42.7
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 3.1e-46 189.5 226 43.8
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 1.2e-45 187.6 233 43.3
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 2.6e-45 186.4 208 46.6
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 3.4e-45 186.0 246 40.7
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 7.6e-45 184.9 246 40.7
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 7.6e-45 184.9 220 43.2
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 7.6e-45 184.9 246 40.2
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 9.9e-45 184.5 246 41.1
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 2.2e-44 183.3 246 40.7
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 3.8e-44 182.6 241 41.1
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 6.4e-44 181.8 246 39.8
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 6.4e-44 181.8 246 40.2
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 6.4e-44 181.8 248 38.7
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 8.4e-44 181.4 243 40.7
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 8.4e-44 181.4 243 40.7
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 2.4e-43 179.9 202 46.5
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 3.2e-43 179.5 196 48.0
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 3.2e-43 179.5 199 46.7
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 4.2e-43 179.1 243 39.5
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 7.1e-43 178.3 211 46.4
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 1.2e-42 177.6 245 41.6
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 1.6e-42 177.2 241 40.2
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 5.6e-40 168.7 240 37.5
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 2.8e-39 166.4 295 35.9
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 4.8e-39 165.6 196 45.9
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.4e-38 164.1 259 41.3
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 5.3e-38 162.2 200 47.0
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 1.3e-36 157.5 239 39.7
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 3.2e-35 152.9 153 54.9
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 5.5e-35 152.1 185 43.8
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 7.1e-35 151.8 244 39.3
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 9.3e-35 151.4 239 39.7
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 5.1e-33 145.6 239 37.2
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 1.1e-32 144.4 196 40.8
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 2.5e-32 143.3 232 38.4
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 4.3e-32 142.5 198 41.9
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 4.0e-30 136.0 235 34.0
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 4.0e-30 136.0 183 41.0
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 6.9e-30 135.2 237 35.0
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 7.6e-29 131.7 239 35.1
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 8.4e-28 128.3 167 43.1
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 7.1e-27 125.2 217 37.3
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 6.7e-25 118.6 240 33.8
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 5.7e-24 115.5 243 31.7
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 1.3e-23 114.4 247 30.0
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 2.8e-23 113.2 237 32.5
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 4.1e-22 109.4 147 38.8
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 2.6e-21 106.7 128 45.3
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 7.7e-21 105.1 127 40.9
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 2.2e-20 103.6 114 43.0
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 3.6e-18 96.3 204 31.4
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 6.1e-18 95.5 111 42.3
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 1.5e-16 90.9 115 41.7
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 2.8e-15 86.7 110 41.8
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 3.1e-14 83.2 114 39.5
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 3.1e-14 83.2 107 37.4
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 4.1e-14 82.8 109 39.4
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 9.1e-14 81.6 121 35.5
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 1.3e-12 77.8 184 33.2
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 2.2e-12 77.0 108 40.7
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 3.8e-12 76.3 85 37.6
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 5.0e-12 75.9 107 37.4
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 2.5e-11 73.6 115 37.4
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 7.2e-11 72.0 106 34.9
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 8.8e-09 65.1 71 43.7
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 1.5e-08 64.3 106 37.7
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 2.8e-07 60.1 71 39.4
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 2.8e-07 60.1 77 37.7
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 6.3e-07 58.9 73 38.4


User provided reference genes

Program Settings