Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G004850 Cucumis sativus L. HOM05D005543 ORTHO05D006584 1.2e-89 333.2 166 100.0
MELO3C019959.2 Cucumis melo HOM05D005543 ORTHO05D006584 6.0e-62 241.1 143 83.9
ClCG08G007180 Citrullus lanatus HOM05D005543 ORTHO05D006584 2.5e-60 235.7 143 82.5
Sed0022332 Sechium edule HOM05D005543 ORTHO05D006584 4.3e-52 208.4 141 73.0
Hma1.2p1_0276F.1_g110980 Hydrangea macrophylla HOM05D005543 ORTHO05D006584 7.3e-44 181.0 125 70.4
Peaxi162Scf00226g00217 Petunia axillaris HOM05D005543 ORTHO05D006584 1.6e-43 179.9 118 74.6
Nitab4.5_0002585g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 2.8e-43 179.1 110 72.7
Dinv41020 Davidia involucrata HOM05D005543 ORTHO05D006584 6.2e-43 177.9 129 65.1
Solyc04g072120.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 2.4e-42 176.0 119 72.3
Sopen04g028290 Solanum pennellii HOM05D005543 ORTHO05D006584 2.4e-42 176.0 119 72.3
Nitab4.5_0001000g0150 Nicotiana tabacum HOM05D005543 ORTHO05D006584 4.0e-42 175.3 119 70.6
Nitab4.5_0000433g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 1.2e-41 173.7 119 69.7
Cpa.g.sc26.124 Carica papaya HOM05D005543 ORTHO05D006584 1.5e-41 173.3 123 65.9
TAR625G0687 Trochodendron aralioides HOM05D005543 ORTHO05D006584 1.5e-41 173.3 151 60.9
PGSC0003DMG400031139 Solanum tuberosum HOM05D005543 ORTHO05D006584 2.0e-41 172.9 119 70.6
TWI53G2072 Tripterygium wilfordii HOM05D005543 ORTHO05D006584 2.0e-41 172.9 120 68.3
PGR102G0915 Punica granatum HOM05D005543 ORTHO05D006584 5.8e-41 171.4 123 69.1
Haze_17839 Corylus avellana HOM05D005543 ORTHO05D006584 7.6e-41 171.0 126 65.9
Atru.chr13.1972 Acer truncatum HOM05D005543 ORTHO05D006584 3.8e-40 168.7 117 68.4
Haze_17833 Corylus avellana HOM05D005543 ORTHO05D006584 3.8e-40 168.7 126 65.1
Peaxi162Scf00160g01739 Petunia axillaris HOM05D005543 ORTHO05D006584 4.9e-40 168.3 124 66.1
CiPaw.16G007100 Carya illinoinensis HOM05D005543 ORTHO05D006584 1.9e-39 166.4 129 64.3
FvH4_2g12791 Fragaria vesca HOM05D005543 ORTHO05D006584 1.9e-39 166.4 113 68.1
FAN15G0123 Fragaria x ananassa HOM05D005543 ORTHO05D006584 1.9e-39 166.4 113 68.1
HanXRQChr11g0320551 Helianthus annuus HOM05D005543 ORTHO05D006584 1.9e-39 166.4 120 67.5
Lsat_1_v5_gn_9_42581 Lactuca sativa HOM05D005543 ORTHO05D006584 1.9e-39 166.4 123 64.2
THA.LOC104800097 Tarenaya hassleriana HOM05D005543 ORTHO05D006584 1.9e-39 166.4 121 66.9
Nitab4.5_0004541g0020 Nicotiana tabacum HOM05D005543 ORTHO05D006584 2.4e-39 166.0 116 68.1
Eucgr.F04165 Eucalyptus grandis HOM05D005543 ORTHO05D006584 3.2e-39 165.6 127 64.6
SGA_v2.0_scaffold166G38393 Striga asiatica HOM05D005543 ORTHO05D006584 3.2e-39 165.6 120 63.3
FAN24G1753 Fragaria x ananassa HOM05D005543 ORTHO05D006584 4.2e-39 165.2 113 67.3
Hund17502 Selenicereus undatus HOM05D005543 ORTHO05D006584 4.2e-39 165.2 100 75.0
PSO541G4578 Papaver somniferum HOM05D005543 ORTHO05D006584 7.1e-39 164.5 122 68.0
Potri.002G062300 Populus trichocarpa HOM05D005543 ORTHO05D006584 7.1e-39 164.5 148 58.8
Gohir.A05G247100 Gossypium hirsutum HOM05D005543 ORTHO05D006584 9.3e-39 164.1 122 63.9
CSS0010673 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 1.2e-38 163.7 91 76.9
CANSAT25G2335 Cannabis sativa HOM05D005543 ORTHO05D006584 1.2e-38 163.7 125 63.2
FAN27G1145 Fragaria x ananassa HOM05D005543 ORTHO05D006584 1.6e-38 163.3 96 77.1
Oeu022062.1 Olea europaea HOM05D005543 ORTHO05D006584 1.6e-38 163.3 127 60.6
Gohir.D05G248600 Gossypium hirsutum HOM05D005543 ORTHO05D006584 2.7e-38 162.5 120 65.8
Gorai.009G259700 Gossypium raimondii HOM05D005543 ORTHO05D006584 2.7e-38 162.5 120 65.8
Cc10_g06390 Coffea canephora HOM05D005543 ORTHO05D006584 3.5e-38 162.2 117 64.1
Actinidia17758 Actinidia chinensis HOM05D005543 ORTHO05D006584 7.9e-38 161.0 121 65.3
Aa31LG4G8860 Aethionema arabicum HOM05D005543 ORTHO05D006584 7.9e-38 161.0 138 60.9
MD05G1036200 Malus domestica HOM05D005543 ORTHO05D006584 7.9e-38 161.0 122 62.3
MSTRG.22116 Avicennia marina HOM05D005543 ORTHO05D006584 1.0e-37 160.6 145 53.1
Sc20g0003140 Simmondsia chinensis HOM05D005543 ORTHO05D006584 1.0e-37 160.6 170 48.8
PSO675G1818 Papaver somniferum HOM05D005543 ORTHO05D006584 1.3e-37 160.2 122 63.9
Manes.02G185600 Manihot esculenta HOM05D005543 ORTHO05D006584 1.8e-37 159.8 121 64.5
Sabra02G0050300 Salix brachista HOM05D005543 ORTHO05D006584 1.8e-37 159.8 148 56.8
Duzib116G0276 Durio zibethinus HOM05D005543 ORTHO05D006584 3.0e-37 159.1 117 64.1
RcHm_v2.0_Chr6g0273681 Rosa chinensis HOM05D005543 ORTHO05D006584 3.0e-37 159.1 105 68.6
Ah.05g168360 Amaranthus hybridus HOM05D005543 ORTHO05D006584 3.9e-37 158.7 126 60.3
Nn5g28876 Nelumbo nucifera HOM05D005543 ORTHO05D006584 3.9e-37 158.7 141 56.0
SalBow6G1236 Salvia bowleyana HOM05D005543 ORTHO05D006584 3.9e-37 158.7 121 61.2
CSS0045165 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 5.1e-37 158.3 127 60.6
MD10G1038300 Malus domestica HOM05D005543 ORTHO05D006584 5.1e-37 158.3 122 62.3
Sopen12g029440 Solanum pennellii HOM05D005543 ORTHO05D006584 6.7e-37 157.9 123 61.0
BcaB03g15617 Brassica carinata HOM05D005543 ORTHO05D006584 8.7e-37 157.5 147 55.8
BraA07t31358Z Brassica rapa HOM05D005543 ORTHO05D006584 8.7e-37 157.5 118 65.3
Solyc12g056760.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 1.1e-36 157.1 123 60.2
A07p30600 Brassica napus HOM05D005543 ORTHO05D006584 1.9e-36 156.4 118 63.6
Lj2g0006240 Lotus japonicus HOM05D005543 ORTHO05D006584 1.9e-36 156.4 115 61.7
Rhsim06G0093300 Rhododendron simsii HOM05D005543 ORTHO05D006584 1.9e-36 156.4 116 62.9
BcaC08g46604 Brassica carinata HOM05D005543 ORTHO05D006584 2.5e-36 156.0 118 64.4
BcaC08g46607 Brassica carinata HOM05D005543 ORTHO05D006584 2.5e-36 156.0 119 63.9
Thhalv10019179m.g Eutrema salsugineum HOM05D005543 ORTHO05D006584 2.5e-36 156.0 142 57.0
Glyma.16G160100 Glycine max HOM05D005543 ORTHO05D006584 2.5e-36 156.0 124 62.1
Prupe.8G044500 Prunus persica HOM05D005543 ORTHO05D006584 2.5e-36 156.0 125 60.0
C06p45840 Brassica napus HOM05D005543 ORTHO05D006584 3.3e-36 155.6 118 65.3
Thecc.08G164300 Theobroma cacao HOM05D005543 ORTHO05D006584 4.3e-36 155.2 121 60.3
BraA07t30695Z Brassica rapa HOM05D005543 ORTHO05D006584 5.6e-36 154.8 118 63.6
Lj4A705G47 Lonicera japonica HOM05D005543 ORTHO05D006584 5.6e-36 154.8 122 63.1
COL.COLO4_13722 Corchorus olitorius HOM05D005543 ORTHO05D006584 7.4e-36 154.5 118 61.0
arahy.Tifrunner.gnm1.ann1.FFL75L Arachis hypogaea HOM05D005543 ORTHO05D006584 9.6e-36 154.1 116 64.7
arahy.Tifrunner.gnm1.ann1.XA0Q13 Arachis hypogaea HOM05D005543 ORTHO05D006584 9.6e-36 154.1 116 64.7
A07p37930 Brassica napus HOM05D005543 ORTHO05D006584 9.6e-36 154.1 139 59.0
BolC6t39636H Brassica oleracea HOM05D005543 ORTHO05D006584 9.6e-36 154.1 118 64.4
ECA232G2646 Erigeron canadensis HOM05D005543 ORTHO05D006584 9.6e-36 154.1 120 65.0
Sp5g26800 Schrenkiella parvula HOM05D005543 ORTHO05D006584 9.6e-36 154.1 132 58.3
SpUn0095_0030 Schrenkiella parvula HOM05D005543 ORTHO05D006584 9.6e-36 154.1 132 58.3
Medtr6g034680 Medicago truncatula HOM05D005543 ORTHO05D006584 1.3e-35 153.7 99 71.7
Phvul.004G088200 Phaseolus vulgaris HOM05D005543 ORTHO05D006584 1.6e-35 153.3 141 54.6
PGSC0003DMG400016956 Solanum tuberosum HOM05D005543 ORTHO05D006584 1.6e-35 153.3 123 60.2
AUR62026611 Chenopodium quinoa HOM05D005543 ORTHO05D006584 2.1e-35 152.9 130 59.2
Lj7A386T90 Lonicera japonica HOM05D005543 ORTHO05D006584 2.1e-35 152.9 144 56.2
Migut.N02941 Erythranthe guttata HOM05D005543 ORTHO05D006584 3.7e-35 152.1 119 58.8
VMungo0464G0571 Vigna mungo HOM05D005543 ORTHO05D006584 3.7e-35 152.1 142 56.3
BcaC08g45757 Brassica carinata HOM05D005543 ORTHO05D006584 4.8e-35 151.8 118 61.9
C06p35380 Brassica napus HOM05D005543 ORTHO05D006584 4.8e-35 151.8 118 61.9
HPP92_007671 Vanilla planifolia HOM05D005543 ORTHO05D006584 4.8e-35 151.8 127 59.1
AT1G71780 Arabidopsis thaliana HOM05D005543 ORTHO05D006584 1.1e-34 150.6 117 62.4
BolC6t38643H Brassica oleracea HOM05D005543 ORTHO05D006584 1.1e-34 150.6 118 61.9
Psat0s2687g0120 Pisum sativum HOM05D005543 ORTHO05D006584 2.4e-34 149.4 107 64.5
Sabra05G0151400 Salix brachista HOM05D005543 ORTHO05D006584 5.3e-34 148.3 120 61.7
vmacro21199 Vaccinium macrocarpon HOM05D005543 ORTHO05D006584 6.9e-34 147.9 124 58.1
Carub.0002s1854 Capsella rubella HOM05D005543 ORTHO05D006584 9.0e-34 147.5 117 61.5
QL02p036789 Quercus lobata HOM05D005543 ORTHO05D006584 9.0e-34 147.5 124 61.3
AL2G31350 Arabidopsis lyrata HOM05D005543 ORTHO05D006584 1.2e-33 147.1 123 59.3
AUR62034923 Chenopodium quinoa HOM05D005543 ORTHO05D006584 1.2e-33 147.1 136 56.6
Nn1g05159 Nelumbo nucifera HOM05D005543 ORTHO05D006584 1.2e-33 147.1 123 57.7
Ciclev10002600m.g Citrus clementina HOM05D005543 ORTHO05D006584 1.5e-33 146.7 119 58.0
TAR381G0628 Trochodendron aralioides HOM05D005543 ORTHO05D006584 1.5e-33 146.7 148 53.4
CDE05G2658 Ceratophyllum demersum HOM05D005543 ORTHO05D006584 2.0e-33 146.4 111 63.1
Lalb_Chr06g0161821 Lupinus albus HOM05D005543 ORTHO05D006584 2.0e-33 146.4 117 60.7
EL10Ac1g01633 Beta vulgaris HOM05D005543 ORTHO05D006584 2.6e-33 146.0 100 63.0
unitig_578.g16221 Utricularia gibba HOM05D005543 ORTHO05D006584 3.4e-33 145.6 90 73.3
GSVIVG01013678001 Vitis vinifera HOM05D005543 ORTHO05D006584 4.5e-33 145.2 114 61.4
Ca_04656_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 2.9e-32 142.5 110 59.1
CARHR291000 Cardamine hirsuta HOM05D005543 ORTHO05D006584 3.8e-32 142.1 149 57.0
DCAR_009611 Daucus carota HOM05D005543 ORTHO05D006584 3.2e-31 139.0 105 64.8
DCAR_019968 Daucus carota HOM05D005543 ORTHO05D006584 4.6e-30 135.2 127 53.5
Aqoxy6G00453 Aquilegia oxysepala HOM05D005543 ORTHO05D006584 8.7e-29 131.0 123 51.2
Medtr1g097400 Medicago truncatula HOM05D005543 ORTHO05D006584 1.4e-26 123.6 99 58.6
Lj5g0027482 Lotus japonicus HOM05D005543 ORTHO05D006584 3.1e-26 122.5 82 65.9
Psat6g189440 Pisum sativum HOM05D005543 ORTHO05D006584 5.3e-26 121.7 113 54.0
Os01g0715800 Oryza sativa ssp. japonica HOM05D005543 ORTHO05D006584 1.5e-25 120.2 84 65.5
TPR.G17022 Trifolium pratense HOM05D005543 ORTHO05D006584 4.5e-25 118.6 122 50.0
Ca_10645_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 2.2e-24 116.3 91 58.2
SEGI_37275 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 2.5e-23 112.8 101 51.5
SEGI_03773 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 3.2e-23 112.5 161 39.8
SEGI_04047 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 3.2e-23 112.5 161 39.8
SGA_v2.0_scaffold43G16323 Striga asiatica HOM05D005543 ORTHO05D006584 3.5e-22 109.0 93 53.8
SEGI_08036 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 7.4e-20 101.3 126 43.7
Zm00001eb121890 Zea mays HOM05D005543 ORTHO05D006584 3.1e-18 95.9 97 43.3
Cfa018258 Carpinus fangiana HOM05D005543 ORTHO05D006584 1.2e-14 84.0 70 61.4
SGA_v2.0_scaffold130G34341 Striga asiatica HOM05D005543 ORTHO05D006584 1.2e-14 84.0 122 40.2
VMungo1127G1001 Vigna mungo HOM05D005543 ORTHO05D006584 3.6e-14 82.4 73 57.5
Mapoly0005s0207 Marchantia polymorpha HOM05D005543 ORTHO05D006584 9.7e-12 74.3 107 31.8
Pp3c1_40160 Physcomitrium patens HOM05D005543 ORTHO05D006584 3.4e-09 65.9 102 29.4
Pp3c17_20130 Physcomitrium patens HOM05D005543 ORTHO05D006584 1.2e-06 57.4 85 27.1


User provided reference genes

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