Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G004830 Cucumis sativus L. HOM05D005529 ORTHO05D006800 1.2e-146 523.1 257 100.0
Sed0025527 Sechium edule HOM05D005529 ORTHO05D006800 3.7e-143 511.5 257 96.5
ClCG08G007150 Citrullus lanatus HOM05D005529 ORTHO05D006800 2.2e-132 475.7 257 91.1
QL02p036323 Quercus lobata HOM05D005529 ORTHO05D006800 3.3e-128 461.8 255 87.8
QL02p036742 Quercus lobata HOM05D005529 ORTHO05D006800 3.3e-128 461.8 255 87.8
Haze_17835 Corylus avellana HOM05D005529 ORTHO05D006800 7.4e-128 460.7 257 87.9
Haze_17841 Corylus avellana HOM05D005529 ORTHO05D006800 7.4e-128 460.7 257 87.9
Eucgr.F02670 Eucalyptus grandis HOM05D005529 ORTHO05D006800 2.2e-127 459.1 257 85.2
Thecc.08G196300 Theobroma cacao HOM05D005529 ORTHO05D006800 3.7e-127 458.4 257 85.6
MD05G1037000 Malus domestica HOM05D005529 ORTHO05D006800 4.8e-127 458.0 257 86.8
CiPaw.15G011100 Carya illinoinensis HOM05D005529 ORTHO05D006800 6.3e-127 457.6 255 85.9
PGR042G1245 Punica granatum HOM05D005529 ORTHO05D006800 6.3e-127 457.6 257 86.0
Prupe.8G045100 Prunus persica HOM05D005529 ORTHO05D006800 1.1e-126 456.8 257 87.2
CiPaw.16G006900 Carya illinoinensis HOM05D005529 ORTHO05D006800 1.4e-126 456.4 255 86.3
CANSAT25G1808 Cannabis sativa HOM05D005529 ORTHO05D006800 1.8e-126 456.1 255 87.5
Cc10_g06360 Coffea canephora HOM05D005529 ORTHO05D006800 2.4e-126 455.7 257 85.6
Solyc12g056770.3 Solanum lycopersicum HOM05D005529 ORTHO05D006800 1.2e-125 453.4 255 84.3
Sopen12g029450 Solanum pennellii HOM05D005529 ORTHO05D006800 1.2e-125 453.4 255 84.3
Aqoxy6G00458 Aquilegia oxysepala HOM05D005529 ORTHO05D006800 2.0e-125 452.6 257 84.8
Peaxi162Scf00160g01637 Petunia axillaris HOM05D005529 ORTHO05D006800 2.0e-125 452.6 257 84.0
Actinidia15622 Actinidia chinensis HOM05D005529 ORTHO05D006800 2.6e-125 452.2 257 85.6
Cpa.g.sc26.128 Carica papaya HOM05D005529 ORTHO05D006800 3.5e-125 451.8 257 85.6
Lj4A706T78 Lonicera japonica HOM05D005529 ORTHO05D006800 3.5e-125 451.8 255 84.7
GSVIVG01013675001 Vitis vinifera HOM05D005529 ORTHO05D006800 3.5e-125 451.8 257 84.8
Glyma.10G219900 Glycine max HOM05D005529 ORTHO05D006800 4.5e-125 451.4 255 84.3
CAN.G26.7 Capsicum annuum HOM05D005529 ORTHO05D006800 7.7e-125 450.7 257 83.7
Migut.C00162 Erythranthe guttata HOM05D005529 ORTHO05D006800 7.7e-125 450.7 255 84.7
Migut.O00737 Erythranthe guttata HOM05D005529 ORTHO05D006800 7.7e-125 450.7 255 84.7
RcHm_v2.0_Chr6g0273541 Rosa chinensis HOM05D005529 ORTHO05D006800 1.0e-124 450.3 257 84.8
Lj5g0011658 Lotus japonicus HOM05D005529 ORTHO05D006800 1.3e-124 449.9 257 83.3
Atru.chr13.1964 Acer truncatum HOM05D005529 ORTHO05D006800 2.9e-124 448.7 257 85.2
CSS0023417 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 5.0e-124 448.0 257 83.3
Psat6g189800 Pisum sativum HOM05D005529 ORTHO05D006800 5.0e-124 448.0 257 83.7
Medtr1g097380 Medicago truncatula HOM05D005529 ORTHO05D006800 6.5e-124 447.6 257 83.3
Phvul.007G085400 Phaseolus vulgaris HOM05D005529 ORTHO05D006800 8.5e-124 447.2 257 82.9
arahy.Tifrunner.gnm1.ann1.MD2PB3 Arachis hypogaea HOM05D005529 ORTHO05D006800 2.5e-123 445.7 257 83.3
arahy.Tifrunner.gnm1.ann1.PZ5J07 Arachis hypogaea HOM05D005529 ORTHO05D006800 2.5e-123 445.7 257 83.3
Glyma.20G171800 Glycine max HOM05D005529 ORTHO05D006800 2.5e-123 445.7 255 83.5
Ciclev10002214m.g Citrus clementina HOM05D005529 ORTHO05D006800 1.2e-122 443.4 255 85.5
FvH4_2g12750 Fragaria vesca HOM05D005529 ORTHO05D006800 1.6e-122 443.0 257 83.7
FAN15G0152 Fragaria x ananassa HOM05D005529 ORTHO05D006800 1.6e-122 443.0 257 83.7
FAN27G2439 Fragaria x ananassa HOM05D005529 ORTHO05D006800 1.6e-122 443.0 257 83.7
TPR.G23153 Trifolium pratense HOM05D005529 ORTHO05D006800 3.6e-122 441.8 257 82.5
Sc26g0003120 Simmondsia chinensis HOM05D005529 ORTHO05D006800 4.7e-122 441.4 257 82.9
THA.LOC104800098 Tarenaya hassleriana HOM05D005529 ORTHO05D006800 6.1e-122 441.0 257 82.1
Manes.02G186100 Manihot esculenta HOM05D005529 ORTHO05D006800 1.0e-121 440.3 258 83.3
MSTRG.965 Avicennia marina HOM05D005529 ORTHO05D006800 1.8e-121 439.5 257 82.1
FAN24G1078 Fragaria x ananassa HOM05D005529 ORTHO05D006800 1.8e-121 439.5 257 83.3
Lalb_Chr06g0161811 Lupinus albus HOM05D005529 ORTHO05D006800 1.8e-121 439.5 257 82.1
COL.COLO4_05242 Corchorus olitorius HOM05D005529 ORTHO05D006800 2.3e-121 439.1 257 82.9
CSS0035962 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 3.0e-121 438.7 257 83.3
Nitab4.5_0004541g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 3.0e-121 438.7 265 80.8
Sabra05G0151800 Salix brachista HOM05D005529 ORTHO05D006800 3.0e-121 438.7 254 84.3
Potri.005G199600 Populus trichocarpa HOM05D005529 ORTHO05D006800 6.7e-121 437.6 254 84.3
CSS0031927 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 8.8e-121 437.2 257 82.9
Lalb_Chr21g0305631 Lupinus albus HOM05D005529 ORTHO05D006800 1.5e-120 436.4 257 80.2
VMungo0720G3143 Vigna mungo HOM05D005529 ORTHO05D006800 1.5e-120 436.4 257 81.7
MELO3C019956.2 Cucumis melo HOM05D005529 ORTHO05D006800 9.7e-120 433.7 257 86.4
Ah.05g168410 Amaranthus hybridus HOM05D005529 ORTHO05D006800 1.7e-119 433.0 255 81.2
Thhalv10019028m.g Eutrema salsugineum HOM05D005529 ORTHO05D006800 2.8e-119 432.2 255 80.8
PGSC0003DMG400016963 Solanum tuberosum HOM05D005529 ORTHO05D006800 4.8e-119 431.4 300 71.3
BcaC08g46609 Brassica carinata HOM05D005529 ORTHO05D006800 8.2e-119 430.6 257 80.2
A07p37940 Brassica napus HOM05D005529 ORTHO05D006800 8.2e-119 430.6 257 80.2
C06p45850 Brassica napus HOM05D005529 ORTHO05D006800 8.2e-119 430.6 257 80.2
BolC6t39637H Brassica oleracea HOM05D005529 ORTHO05D006800 8.2e-119 430.6 257 80.2
BraA07t31359Z Brassica rapa HOM05D005529 ORTHO05D006800 8.2e-119 430.6 257 80.2
AUR62032105 Chenopodium quinoa HOM05D005529 ORTHO05D006800 8.2e-119 430.6 271 77.1
Oeu027223.1 Olea europaea HOM05D005529 ORTHO05D006800 1.4e-118 429.9 257 82.1
Sp5g26810 Schrenkiella parvula HOM05D005529 ORTHO05D006800 1.4e-118 429.9 255 80.4
SpUn0095_0040 Schrenkiella parvula HOM05D005529 ORTHO05D006800 1.4e-118 429.9 255 80.4
AT1G71790 Arabidopsis thaliana HOM05D005529 ORTHO05D006800 1.8e-118 429.5 255 79.6
AUR62034931 Chenopodium quinoa HOM05D005529 ORTHO05D006800 1.8e-118 429.5 271 77.1
Manes.18G096400 Manihot esculenta HOM05D005529 ORTHO05D006800 4.1e-118 428.3 258 81.4
DCAR_019977 Daucus carota HOM05D005529 ORTHO05D006800 5.3e-118 427.9 254 79.1
ECA232G2783 Erigeron canadensis HOM05D005529 ORTHO05D006800 7.0e-118 427.6 256 78.5
AL2G31360 Arabidopsis lyrata HOM05D005529 ORTHO05D006800 9.1e-118 427.2 255 79.2
Carub.0002s1855 Capsella rubella HOM05D005529 ORTHO05D006800 9.1e-118 427.2 255 79.2
SGA_v2.0_scaffold161G37858 Striga asiatica HOM05D005529 ORTHO05D006800 1.2e-117 426.8 263 79.8
Gohir.A05G247200 Gossypium hirsutum HOM05D005529 ORTHO05D006800 1.6e-117 426.4 257 80.9
Gohir.D05G248700 Gossypium hirsutum HOM05D005529 ORTHO05D006800 1.6e-117 426.4 257 80.9
Gorai.009G259800 Gossypium raimondii HOM05D005529 ORTHO05D006800 1.6e-117 426.4 257 80.9
TWI34G1474 Tripterygium wilfordii HOM05D005529 ORTHO05D006800 2.0e-117 426.0 257 81.3
Aa31LG4G8850 Aethionema arabicum HOM05D005529 ORTHO05D006800 3.5e-117 425.2 255 80.0
HanXRQChr11g0320531 Helianthus annuus HOM05D005529 ORTHO05D006800 3.5e-117 425.2 257 79.8
unitig_32.g11170 Utricularia gibba HOM05D005529 ORTHO05D006800 7.7e-117 424.1 257 78.6
CDE04G0217 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 6.5e-116 421.0 255 77.6
ECA247G3042 Erigeron canadensis HOM05D005529 ORTHO05D006800 7.2e-115 417.5 255 78.0
Nn1g05167 Nelumbo nucifera HOM05D005529 ORTHO05D006800 7.2e-115 417.5 257 79.4
PSO675G2610 Papaver somniferum HOM05D005529 ORTHO05D006800 9.4e-115 417.2 256 78.1
PSO541G1243 Papaver somniferum HOM05D005529 ORTHO05D006800 3.6e-114 415.2 256 77.7
Cfa018254 Carpinus fangiana HOM05D005529 ORTHO05D006800 4.7e-114 414.8 257 80.9
Lsat_1_v5_gn_9_42620 Lactuca sativa HOM05D005529 ORTHO05D006800 1.1e-110 403.7 252 76.6
Dinv41017 Davidia involucrata HOM05D005529 ORTHO05D006800 3.1e-110 402.1 230 84.8
Lsat_1_v5_gn_1_5401 Lactuca sativa HOM05D005529 ORTHO05D006800 9.1e-110 400.6 254 76.8
Os03g0381200 Oryza sativa ssp. japonica HOM05D005529 ORTHO05D006800 5.5e-107 391.3 257 73.9
TAR381G0607 Trochodendron aralioides HOM05D005529 ORTHO05D006800 8.0e-106 387.5 281 71.2
Nn5g28882 Nelumbo nucifera HOM05D005529 ORTHO05D006800 2.3e-105 386.0 250 74.8
vmacro21201 Vaccinium macrocarpon HOM05D005529 ORTHO05D006800 2.2e-103 379.4 214 83.6
ATR0564G028 Amborella trichopoda HOM05D005529 ORTHO05D006800 3.5e-101 372.1 231 77.5
Duzib093G1833 Durio zibethinus HOM05D005529 ORTHO05D006800 1.3e-100 370.2 257 72.8
Hma1.2p1_0358F.1_g134920 Hydrangea macrophylla HOM05D005529 ORTHO05D006800 4.3e-99 365.2 213 81.2
Nitab4.5_0004295g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 7.3e-99 364.4 223 78.9
Lj7C387G8 Lonicera japonica HOM05D005529 ORTHO05D006800 5.7e-96 354.8 255 67.5
Mapoly0006s0028 Marchantia polymorpha HOM05D005529 ORTHO05D006800 5.9e-93 344.7 247 69.2
Pp3c1_32040 Physcomitrium patens HOM05D005529 ORTHO05D006800 3.0e-92 342.4 251 68.9
SMO141G0273 Selaginella moellendorffii HOM05D005529 ORTHO05D006800 1.4e-89 333.6 250 66.4
TAR625G0192 Trochodendron aralioides HOM05D005529 ORTHO05D006800 1.4e-89 333.6 198 81.3
CDE07G0226 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 2.0e-88 329.7 203 75.4
AagrBONN_evm.TU.Sc2ySwM_228.4378 Anthoceros agrestis HOM05D005529 ORTHO05D006800 1.7e-87 326.6 251 66.5
MD10G1039400 Malus domestica HOM05D005529 ORTHO05D006800 3.9e-76 288.9 159 84.3
Zm00001eb018520 Zea mays HOM05D005529 ORTHO05D006800 2.5e-67 259.6 170 71.8
CARHR290990 Cardamine hirsuta HOM05D005529 ORTHO05D006800 3.3e-67 259.2 153 79.7
Dinv13098 Davidia involucrata HOM05D005529 ORTHO05D006800 2.2e-63 246.5 132 88.6
PRCOL_00004850 Prasinoderma coloniale HOM05D005529 ORTHO05D006800 2.4e-62 243.0 254 51.2
Ca_10643_v3 Cicer arietinum L. HOM05D005529 ORTHO05D006800 5.1e-60 235.3 142 79.6
Haze_27340 Corylus avellana HOM05D005529 ORTHO05D006800 7.3e-59 231.5 248 47.6
MD10G1040900 Malus domestica HOM05D005529 ORTHO05D006800 8.4e-55 218.0 198 60.6
CSS0032133 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 1.8e-52 210.3 116 81.0
Glyma.06G212500 Glycine max HOM05D005529 ORTHO05D006800 6.7e-52 208.4 130 78.5
Actinidia02780 Actinidia chinensis HOM05D005529 ORTHO05D006800 8.7e-52 208.0 112 90.2
Rhsim06G0089200 Rhododendron simsii HOM05D005529 ORTHO05D006800 1.8e-49 200.3 105 92.4
Cfa022509 Carpinus fangiana HOM05D005529 ORTHO05D006800 3.1e-49 199.5 272 41.2
Lsat_1_v5_gn_8_71180 Lactuca sativa HOM05D005529 ORTHO05D006800 2.6e-48 196.4 156 63.5
Glyma.20G171766 Glycine max HOM05D005529 ORTHO05D006800 3.8e-47 192.6 105 85.7
Glyma.09G074800 Glycine max HOM05D005529 ORTHO05D006800 4.6e-45 185.7 114 79.8
AUR62022308 Chenopodium quinoa HOM05D005529 ORTHO05D006800 6.7e-44 181.8 257 45.1
HPP92_020840 Vanilla planifolia HOM05D005529 ORTHO05D006800 3.3e-43 179.5 105 82.9
BcaC08g46606 Brassica carinata HOM05D005529 ORTHO05D006800 1.3e-42 177.6 105 80.0
Glyma.04G140500 Glycine max HOM05D005529 ORTHO05D006800 1.2e-37 161.0 104 77.9
Lsat_1_v5_gn_3_73520 Lactuca sativa HOM05D005529 ORTHO05D006800 4.8e-34 149.1 91 73.6
Actinidia17753 Actinidia chinensis HOM05D005529 ORTHO05D006800 6.5e-31 138.7 117 61.5
SalBow7G1408 Salvia bowleyana HOM05D005529 ORTHO05D006800 6.7e-28 128.6 67 91.0
HPP92_020745 Vanilla planifolia HOM05D005529 ORTHO05D006800 1.3e-23 114.4 96 61.5
HPP92_020744 Vanilla planifolia HOM05D005529 ORTHO05D006800 2.5e-22 110.2 102 55.9
MD10G1041000 Malus domestica HOM05D005529 ORTHO05D006800 6.1e-21 105.5 60 86.7
HPP92_020839 Vanilla planifolia HOM05D005529 ORTHO05D006800 1.6e-13 80.9 55 69.1
Glyma.16G101900 Glycine max HOM05D005529 ORTHO05D006800 3.6e-13 79.7 60 66.7
VMungo0464G1177 Vigna mungo HOM05D005529 ORTHO05D006800 2.0e-08 63.9 40 77.5


User provided reference genes

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