Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 4.2e-110 401.4 201 100.0
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.2e-109 399.8 201 99.5
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.2e-109 399.8 201 99.5
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 7.4e-99 364.0 210 88.6
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 4.2e-86 321.6 201 83.1
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 6.5e-79 297.7 201 77.6
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 3.7e-74 282.0 201 72.6
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 5.3e-73 278.1 201 71.6
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 7.7e-72 274.2 201 72.1
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.5e-70 270.0 202 71.8
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 5.5e-70 268.1 204 69.1
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 1.2e-69 266.9 204 68.6
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 2.1e-69 266.2 199 68.8
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 2.7e-69 265.8 201 68.7
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 3.6e-69 265.4 204 69.6
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 1.4e-68 263.5 203 69.0
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 1.4e-68 263.5 202 68.8
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 1.8e-68 263.1 202 66.8
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 1.8e-68 263.1 202 68.8
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 1.8e-68 263.1 202 68.8
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 1.8e-68 263.1 202 68.8
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 3.0e-68 262.3 201 68.2
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 4.0e-68 261.9 203 68.0
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 4.0e-68 261.9 204 69.1
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 5.2e-68 261.5 199 69.3
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 6.8e-68 261.2 201 67.7
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 6.8e-68 261.2 194 70.1
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 8.8e-68 260.8 203 68.5
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 1.2e-67 260.4 210 66.7
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 2.0e-67 259.6 200 68.5
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 2.0e-67 259.6 210 66.7
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 2.6e-67 259.2 201 67.2
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 3.4e-67 258.8 202 67.3
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 4.4e-67 258.5 202 67.8
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 5.7e-67 258.1 204 67.6
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 7.5e-67 257.7 207 67.1
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 9.8e-67 257.3 201 64.7
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 9.8e-67 257.3 202 67.3
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 1.3e-66 256.9 199 69.3
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 1.3e-66 256.9 202 65.8
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 1.7e-66 256.5 201 66.2
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 1.7e-66 256.5 201 66.2
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 1.7e-66 256.5 207 67.6
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 2.8e-66 255.8 203 68.5
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 3.7e-66 255.4 201 66.7
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 4.8e-66 255.0 204 65.7
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 4.8e-66 255.0 201 66.2
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 4.8e-66 255.0 198 67.7
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 4.8e-66 255.0 203 66.5
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 6.3e-66 254.6 202 66.8
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 6.3e-66 254.6 202 66.8
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 6.3e-66 254.6 201 65.7
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 1.4e-65 253.4 202 66.3
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 1.4e-65 253.4 203 66.0
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.4e-65 252.7 188 68.6
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 5.4e-65 251.5 188 68.6
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 7.0e-65 251.1 203 65.5
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 7.0e-65 251.1 202 64.9
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 7.0e-65 251.1 205 66.3
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 7.0e-65 251.1 202 65.3
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 7.0e-65 251.1 192 68.8
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 7.0e-65 251.1 212 63.7
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 9.1e-65 250.8 189 69.3
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 9.1e-65 250.8 199 66.8
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 9.1e-65 250.8 225 62.7
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.2e-64 250.4 188 68.1
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.6e-64 250.0 188 68.6
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 1.6e-64 250.0 203 65.0
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 2.0e-64 249.6 199 64.8
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 2.0e-64 249.6 201 65.2
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 2.7e-64 249.2 204 64.2
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 2.7e-64 249.2 204 64.2
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 2.7e-64 249.2 188 68.1
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 2.7e-64 249.2 202 64.4
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 3.5e-64 248.8 202 64.9
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 4.5e-64 248.4 202 64.4
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 4.5e-64 248.4 237 57.8
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 4.5e-64 248.4 198 65.2
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 7.7e-64 247.7 202 64.9
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 7.7e-64 247.7 201 64.2
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 7.7e-64 247.7 218 65.6
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 1.0e-63 247.3 202 64.9
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 1.0e-63 247.3 202 64.9
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 2.3e-63 246.1 202 64.4
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 2.3e-63 246.1 203 65.0
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 2.3e-63 246.1 202 61.9
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 2.9e-63 245.7 204 63.2
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 2.9e-63 245.7 202 64.4
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 2.9e-63 245.7 187 68.4
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 3.8e-63 245.4 194 65.5
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.8e-63 245.4 168 77.4
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 3.8e-63 245.4 201 65.7
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 3.8e-63 245.4 202 64.4
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 5.0e-63 245.0 194 65.5
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 5.0e-63 245.0 194 65.5
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 1.1e-62 243.8 201 63.2
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 1.1e-62 243.8 201 63.7
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 4.2e-62 241.9 192 68.2
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 5.5e-62 241.5 197 65.0
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 7.2e-62 241.1 188 67.6
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 9.5e-62 240.7 203 63.5
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 9.5e-62 240.7 203 63.5
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 1.2e-61 240.4 202 60.9
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 8.0e-61 237.7 202 61.4
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 2.0e-59 233.0 198 60.6
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 3.4e-59 232.3 205 62.0
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 3.1e-57 225.7 248 54.0
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 7.0e-57 224.6 201 63.7
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 1.6e-56 223.4 199 58.8
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 6.6e-55 218.0 255 49.0
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 1.9e-54 216.5 196 58.2
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 9.5e-54 214.2 105 98.1
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 4.7e-53 211.8 201 55.2
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 1.8e-52 209.9 181 64.1
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 2.3e-52 209.5 292 45.5
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 4.0e-52 208.8 172 64.0
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 8.9e-52 207.6 105 95.2
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 3.2e-49 199.1 203 56.7
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 1.0e-47 194.1 113 82.3
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 6.6e-47 191.4 113 79.6
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 2.8e-45 186.0 115 75.7
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 7.3e-38 161.4 113 68.1
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 2.3e-36 156.4 137 61.3
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 1.3e-34 150.6 182 45.1
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 2.9e-34 149.4 148 58.1
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 3.7e-34 149.1 142 53.5
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 2.7e-32 142.9 126 61.1
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 1.3e-31 140.6 106 58.5
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 3.0e-31 139.4 137 56.2
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 7.3e-30 134.8 138 54.3
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 1.4e-28 130.6 149 53.7
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 7.6e-27 124.8 81 72.8
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 7.6e-27 124.8 81 72.8
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 6.4e-26 121.7 141 49.6
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 8.4e-26 121.3 129 53.5
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 2.4e-25 119.8 132 52.3
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 5.4e-25 118.6 63 90.5
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 9.6e-22 107.8 64 81.2
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 2.1e-21 106.7 61 82.0
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 2.8e-21 106.3 104 45.2
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 2.4e-20 103.2 65 75.4
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 4.0e-20 102.4 106 39.6
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 6.9e-20 101.7 65 72.3
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 2.6e-19 99.8 84 46.4
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 2.4e-17 93.2 115 52.2
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 3.2e-17 92.8 106 41.5
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 1.1e-14 84.3 50 78.0
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.9e-14 83.6 104 49.0
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 5.6e-14 82.0 111 39.6
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 1.4e-12 77.4 122 36.9
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 2.5e-06 56.6 32 84.4
QL04p024921 Quercus lobata HOM05D004886 ORTHO05D005868 5.6e-06 55.5 28 92.9


User provided reference genes

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