Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 3.2e-262 907.9 472 100.0
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 1.6e-248 862.4 472 95.3
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 3.7e-234 814.7 472 89.6
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 6.7e-191 671.0 473 74.6
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 3.8e-186 655.2 472 73.3
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 2.2e-162 576.2 476 64.9
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 1.7e-154 550.1 472 62.1
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 2.9e-154 549.3 478 62.1
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 2.9e-154 549.3 478 62.6
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 3.8e-154 548.9 481 62.8
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 6.5e-154 548.1 479 62.4
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 1.4e-153 547.0 472 62.1
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 3.2e-153 545.8 478 62.3
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 1.1e-150 537.3 476 61.6
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 2.0e-150 536.6 478 63.6
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 2.6e-150 536.2 477 61.8
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 3.3e-150 535.8 477 61.0
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 4.4e-150 535.4 475 62.7
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 5.7e-150 535.0 477 61.2
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 1.3e-149 533.9 476 60.3
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 3.7e-149 532.3 481 60.5
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 3.1e-148 529.3 475 60.4
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 5.3e-148 528.5 474 60.3
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 3.8e-146 522.3 478 59.6
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 6.5e-146 521.5 477 59.1
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 2.5e-145 519.6 477 59.3
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 5.5e-145 518.5 474 58.9
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 7.2e-145 518.1 478 59.2
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 1.6e-144 516.9 476 60.1
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 2.7e-144 516.2 474 58.9
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 4.7e-144 515.4 475 59.8
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 4.7e-144 515.4 475 59.8
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 6.1e-144 515.0 477 60.4
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.4e-143 513.8 478 59.2
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 1.4e-143 513.8 475 60.6
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 3.0e-143 512.7 488 58.0
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 5.2e-143 511.9 481 59.3
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 8.8e-143 511.1 471 59.0
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 1.5e-142 510.4 479 58.0
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 2.8e-141 506.1 481 57.0
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 8.2e-141 504.6 476 58.2
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.8e-140 503.4 473 57.9
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 4.1e-140 502.3 483 60.7
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 7.0e-140 501.5 473 57.9
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 9.1e-140 501.1 471 59.0
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 4.5e-139 498.8 605 49.4
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 3.8e-138 495.7 482 58.9
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 6.5e-138 495.0 476 55.5
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 4.2e-137 492.3 475 58.3
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 7.2e-137 491.5 473 56.9
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 7.2e-137 491.5 483 58.2
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 9.4e-137 491.1 476 57.8
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.8e-132 476.9 479 56.4
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.2e-131 474.2 493 55.2
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 2.5e-129 466.5 482 55.4
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 2.5e-129 466.5 475 56.4
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 1.2e-126 457.6 508 51.4
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.8e-125 453.0 476 54.8
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 4.9e-125 452.2 476 55.0
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 1.1e-124 451.1 476 54.6
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 7.0e-124 448.4 475 54.9
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 3.8e-122 442.6 476 52.1
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 1.5e-121 440.7 474 53.6
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 8.0e-120 434.9 439 56.5
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 6.8e-119 431.8 393 57.0
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 1.2e-118 431.0 486 52.5
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 1.2e-118 431.0 486 52.5
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 4.4e-118 429.1 483 52.6
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 4.4e-118 429.1 478 52.7
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 6.4e-117 425.2 549 47.9
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 1.4e-116 424.1 480 53.8
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 1.2e-115 421.0 490 50.2
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 1.7e-114 417.2 348 62.1
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 8.0e-112 408.3 487 51.5
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.4e-111 407.5 487 50.1
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 4.0e-111 406.0 500 48.0
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 5.8e-110 402.1 530 46.4
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 8.3e-109 398.3 376 59.6
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 3.2e-108 396.4 461 49.7
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 5.4e-108 395.6 487 49.5
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 5.4e-108 395.6 478 49.4
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 7.0e-108 395.2 478 48.5
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 9.2e-108 394.8 485 49.3
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 1.2e-107 394.4 487 47.8
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 2.7e-107 393.3 517 46.0
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 4.6e-107 392.5 479 47.8
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 1.0e-106 391.3 461 49.7
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.0e-106 391.3 465 49.2
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 1.3e-106 391.0 478 47.9
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 1.3e-106 391.0 479 47.6
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 3.0e-106 389.8 498 47.0
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 1.1e-105 387.9 488 48.4
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.1e-105 387.9 483 49.3
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 1.9e-105 387.1 479 49.9
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 3.3e-105 386.3 485 48.5
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 3.3e-105 386.3 484 49.2
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 3.3e-105 386.3 487 47.2
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 5.6e-105 385.6 485 47.6
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 7.3e-105 385.2 476 48.7
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 7.3e-105 385.2 475 46.9
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 1.2e-104 384.4 482 48.8
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 1.2e-104 384.4 480 47.3
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 1.6e-104 384.0 476 48.5
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 2.8e-104 383.3 483 49.3
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 3.6e-104 382.9 483 47.6
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 8.1e-104 381.7 483 49.1
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 1.1e-103 381.3 481 49.3
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 1.8e-103 380.6 481 49.3
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 3.1e-103 379.8 479 46.3
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 3.1e-103 379.8 476 47.9
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 4.0e-103 379.4 473 46.9
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 4.4e-102 375.9 427 51.3
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 1.3e-101 374.4 485 47.6
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 2.2e-101 373.6 474 48.9
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 2.9e-101 373.2 490 46.9
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 8.3e-101 371.7 374 58.0
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 2.1e-99 367.1 477 47.0
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 1.6e-96 357.5 279 65.2
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.1e-95 354.8 477 46.1
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 3.1e-95 353.2 429 47.8
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 2.0e-94 350.5 477 46.3
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 1.7e-93 347.4 465 46.0
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 1.6e-91 340.9 479 44.9
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 6.6e-90 335.5 471 43.5
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.5e-89 334.3 449 45.2
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 2.8e-88 330.1 311 55.0
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 4.7e-88 329.3 370 47.3
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 8.1e-88 328.6 370 48.9
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 4.9e-85 319.3 359 48.7
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 1.1e-84 318.2 382 49.0
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 3.2e-84 316.6 441 45.4
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 3.2e-84 316.6 460 44.6
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 7.8e-83 312.0 374 50.0
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 2.5e-81 307.0 364 45.1
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 2.8e-80 303.5 484 41.3
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 5.3e-79 299.3 382 50.0
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 4.9e-77 292.7 327 50.8
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 2.1e-75 287.3 311 50.2
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 7.9e-75 285.4 372 46.8
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 4.3e-73 279.6 355 48.7
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 1.3e-72 278.1 242 58.3
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 2.1e-72 277.3 369 44.4
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 3.4e-70 270.0 212 64.2
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 9.3e-68 261.9 316 48.1
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 5.3e-63 246.1 401 40.9
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 6.5e-61 239.2 304 43.8
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.4e-60 238.0 312 41.3
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 1.9e-60 237.7 314 42.4
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.5e-60 237.3 312 41.3
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.5e-57 228.0 371 41.2
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 2.8e-56 223.8 144 73.6
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 9.0e-55 218.8 357 40.1
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.7e-53 214.5 293 41.0
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 1.7e-53 214.5 266 41.0
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 1.1e-52 211.8 391 35.5
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 3.2e-52 210.3 375 36.5
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 1.5e-49 201.4 205 52.2
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 2.0e-49 201.1 228 50.0
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 5.7e-49 199.5 262 44.3
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 1.3e-48 198.4 249 42.6
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 4.1e-47 193.4 321 37.7
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 1.2e-46 191.8 272 41.5
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 4.7e-43 179.9 234 43.2
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 9.4e-36 155.6 102 69.6
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 2.1e-35 154.5 140 55.0
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 1.8e-34 151.4 243 40.7
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 2.8e-32 144.1 206 44.2
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 2.7e-27 127.5 207 39.6
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 3.4e-25 120.6 76 72.4
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 2.2e-24 117.9 107 55.1
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.1e-23 115.5 80 66.2
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 1.2e-22 112.1 193 36.3
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.7e-21 108.2 191 37.7
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 8.0e-19 99.4 72 68.1
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.5e-17 95.1 86 57.0
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 1.1e-15 89.0 62 66.1
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 1.1e-15 89.0 125 44.8
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 1.2e-09 68.9 52 59.6
GSVIVG01001936001 Vitis vinifera HOM05D003737 ORTHO05D004640 2.8e-08 64.3 79 54.4
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 2.4e-07 61.2 34 85.3
Medtr4g097660 Medicago truncatula HOM05D003737 ORTHO05D048953 9.2e-07 59.3 77 44.2


User provided reference genes

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