Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G004530 Cucumis sativus L. HOM05D006718 ORTHO05D008492 0.0e+00 1077.8 600 100.0
MELO3C019922.2 Cucumis melo HOM05D006718 ORTHO05D008492 1.8e-294 1015.4 600 93.0
ClCG08G008520 Citrullus lanatus HOM05D006718 ORTHO05D008492 1.5e-259 899.4 610 81.5
Sed0008467 Sechium edule HOM05D006718 ORTHO05D008492 3.6e-189 665.6 616 68.7
Haze_03406 Corylus avellana HOM05D006718 ORTHO05D008492 1.3e-79 301.6 582 44.3
QL04p050382 Quercus lobata HOM05D006718 ORTHO05D008492 5.7e-78 296.2 574 44.4
Cfa010452 Carpinus fangiana HOM05D006718 ORTHO05D008492 1.2e-75 288.5 550 42.7
Prupe.2G061400 Prunus persica HOM05D006718 ORTHO05D008492 2.5e-73 280.8 566 39.9
MD02G1263300 Malus domestica HOM05D006718 ORTHO05D008492 2.8e-69 267.3 563 40.1
FAN23G2020 Fragaria x ananassa HOM05D006718 ORTHO05D008492 7.7e-67 259.2 566 41.5
MD07G1054700 Malus domestica HOM05D006718 ORTHO05D008492 3.8e-66 256.9 553 38.7
FAN19G2415 Fragaria x ananassa HOM05D006718 ORTHO05D008492 1.4e-65 255.0 564 41.7
FAN28G2084 Fragaria x ananassa HOM05D006718 ORTHO05D008492 2.5e-65 254.2 560 41.4
FvH4_1g30390 Fragaria vesca HOM05D006718 ORTHO05D008492 7.2e-65 252.7 565 41.2
RcHm_v2.0_Chr3g0490591 Rosa chinensis HOM05D006718 ORTHO05D008492 2.1e-64 251.1 566 39.8
CiPaw.13G047100 Carya illinoinensis HOM05D006718 ORTHO05D008492 2.7e-64 250.8 418 44.3
Dinv24591 Davidia involucrata HOM05D006718 ORTHO05D008492 2.0e-62 244.6 523 40.3
TWI38G0042 Tripterygium wilfordii HOM05D006718 ORTHO05D008492 8.2e-61 239.2 537 41.9
Eucgr.J00311 Eucalyptus grandis HOM05D006718 ORTHO05D008492 1.6e-56 224.9 566 35.3
Glyma.14G084400 Glycine max HOM05D006718 ORTHO05D008492 2.3e-55 221.1 581 37.7
Nn2g14019 Nelumbo nucifera HOM05D006718 ORTHO05D008492 2.3e-55 221.1 613 35.2
CANSAT56G0860 Cannabis sativa HOM05D006718 ORTHO05D008492 3.0e-55 220.7 577 37.8
Ciclev10015184m.g Citrus clementina HOM05D006718 ORTHO05D008492 1.3e-53 215.3 493 38.3
Atru.chr12.1182 Acer truncatum HOM05D006718 ORTHO05D008492 4.8e-53 213.4 500 35.4
Manes.07G082900 Manihot esculenta HOM05D006718 ORTHO05D008492 6.3e-53 213.0 545 38.0
TAR369G0954 Trochodendron aralioides HOM05D006718 ORTHO05D008492 1.8e-52 211.5 543 36.6
Thecc.10G129200 Theobroma cacao HOM05D006718 ORTHO05D008492 2.4e-52 211.1 532 39.8
VMungo0647G0438 Vigna mungo HOM05D006718 ORTHO05D008492 5.0e-50 203.4 442 38.9
Phvul.011G216700 Phaseolus vulgaris HOM05D006718 ORTHO05D008492 4.2e-49 200.3 590 35.1
MBI15_g36944_MAGBIO Magnolia biondii HOM05D006718 ORTHO05D008492 5.5e-49 199.9 557 35.4
Sc09g0004890 Simmondsia chinensis HOM05D006718 ORTHO05D008492 5.5e-49 199.9 442 38.7
Sabra10G0192200 Salix brachista HOM05D006718 ORTHO05D008492 1.2e-48 198.7 639 32.9
Gohir.A06G171400 Gossypium hirsutum HOM05D006718 ORTHO05D008492 1.6e-48 198.4 457 38.1
Glyma.17G240500 Glycine max HOM05D006718 ORTHO05D008492 6.1e-48 196.4 561 36.4
Potri.010G246500 Populus trichocarpa HOM05D006718 ORTHO05D008492 8.0e-48 196.1 622 32.6
Lj3g0008993 Lotus japonicus HOM05D006718 ORTHO05D008492 1.0e-47 195.7 567 35.4
Lalb_Chr25g0284721 Lupinus albus HOM05D006718 ORTHO05D008492 3.0e-47 194.1 561 36.7
Gohir.D06G179500 Gossypium hirsutum HOM05D006718 ORTHO05D008492 4.0e-47 193.7 444 37.8
Gorai.010G210100 Gossypium raimondii HOM05D006718 ORTHO05D008492 4.0e-47 193.7 444 37.8
Duzib128G0030 Durio zibethinus HOM05D006718 ORTHO05D008492 1.5e-46 191.8 379 43.5
Ca_03601_v3 Cicer arietinum L. HOM05D006718 ORTHO05D008492 7.5e-46 189.5 490 35.5
GSVIVG01027215001 Vitis vinifera HOM05D006718 ORTHO05D008492 1.4e-44 185.3 447 39.4
PGR044G1203 Punica granatum HOM05D006718 ORTHO05D008492 4.5e-43 180.3 570 36.7
THA.LOC104811338 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 1.0e-42 179.1 444 34.7
AL6G29690 Arabidopsis lyrata HOM05D006718 ORTHO05D008492 8.5e-42 176.0 410 34.6
Hund06826 Selenicereus undatus HOM05D006718 ORTHO05D008492 1.5e-41 175.3 560 35.0
AUR62014308 Chenopodium quinoa HOM05D006718 ORTHO05D008492 5.5e-41 173.3 581 34.1
SGA_v2.0_scaffold196G40987 Striga asiatica HOM05D006718 ORTHO05D008492 1.2e-40 172.2 426 35.4
Nitab4.5_0001611g0090 Nicotiana tabacum HOM05D006718 ORTHO05D008492 2.1e-40 171.4 426 38.3
AUR62034103 Chenopodium quinoa HOM05D006718 ORTHO05D008492 8.0e-40 169.5 582 34.7
AT5G18440 Arabidopsis thaliana HOM05D006718 ORTHO05D008492 1.0e-39 169.1 413 34.9
Lj7A493G35 Lonicera japonica HOM05D006718 ORTHO05D008492 3.0e-39 167.5 309 41.1
Sabra08G0007500 Salix brachista HOM05D006718 ORTHO05D008492 3.0e-39 167.5 614 31.6
Thhalv10013325m.g Eutrema salsugineum HOM05D006718 ORTHO05D008492 4.0e-39 167.2 429 35.7
Peaxi162Scf00647g00315 Petunia axillaris HOM05D006718 ORTHO05D008492 6.8e-39 166.4 548 34.1
Carub.0006s1670 Capsella rubella HOM05D006718 ORTHO05D008492 1.2e-38 165.6 428 34.6
CAN.G134.56 Capsicum annuum HOM05D006718 ORTHO05D008492 4.9e-37 160.2 557 33.0
DCAR_006628 Daucus carota HOM05D006718 ORTHO05D008492 6.3e-37 159.8 240 44.6
Nitab4.5_0005056g0030 Nicotiana tabacum HOM05D006718 ORTHO05D008492 6.3e-37 159.8 457 35.9
Sp6g25880 Schrenkiella parvula HOM05D006718 ORTHO05D008492 1.4e-36 158.7 423 38.3
Solyc01g096920.3 Solanum lycopersicum HOM05D006718 ORTHO05D008492 1.4e-36 158.7 517 35.4
EL10Ac4g08778 Beta vulgaris HOM05D006718 ORTHO05D008492 1.8e-36 158.3 573 30.7
Sopen01g040630 Solanum pennellii HOM05D006718 ORTHO05D008492 2.4e-36 157.9 519 35.8
MSTRG.5086 Avicennia marina HOM05D006718 ORTHO05D008492 3.1e-36 157.5 514 31.5
Aqoxy1G00086 Aquilegia oxysepala HOM05D006718 ORTHO05D008492 5.4e-36 156.8 542 34.3
PGSC0003DMG400027524 Solanum tuberosum HOM05D006718 ORTHO05D008492 1.6e-35 155.2 561 33.9
Ah.06g191200 Amaranthus hybridus HOM05D006718 ORTHO05D008492 4.5e-35 153.7 545 31.6
CSS0042038 Camellia sinensis var. sinensis HOM05D006718 ORTHO05D008492 4.5e-35 153.7 217 46.1
COL.COLO4_28900 Corchorus olitorius HOM05D006718 ORTHO05D008492 1.7e-34 151.8 214 48.1
PSO339G3483 Papaver somniferum HOM05D006718 ORTHO05D008492 8.6e-34 149.4 539 32.1
Rhsim01G0121600 Rhododendron simsii HOM05D006718 ORTHO05D008492 8.6e-34 149.4 530 34.9
BolC9t58690H Brassica oleracea HOM05D006718 ORTHO05D008492 1.9e-33 148.3 406 33.7
PSO384G1654 Papaver somniferum HOM05D006718 ORTHO05D008492 1.9e-33 148.3 544 32.9
FAN26G3384 Fragaria x ananassa HOM05D006718 ORTHO05D008492 4.2e-33 147.1 519 32.9
SalBow4G0879 Salvia bowleyana HOM05D006718 ORTHO05D008492 5.5e-33 146.7 436 34.2
A10p21140 Brassica napus HOM05D006718 ORTHO05D008492 2.1e-32 144.8 417 33.8
Potri.008G012250 Populus trichocarpa HOM05D006718 ORTHO05D008492 2.1e-32 144.8 325 36.0
C09p58250 Brassica napus HOM05D006718 ORTHO05D008492 4.7e-32 143.7 406 34.7
CARHR194580 Cardamine hirsuta HOM05D006718 ORTHO05D008492 3.0e-31 141.0 361 34.9
BcaB08g36679 Brassica carinata HOM05D006718 ORTHO05D008492 8.9e-31 139.4 335 34.6
Cc02_g32070 Coffea canephora HOM05D006718 ORTHO05D008492 1.2e-30 139.0 583 29.7
Os01g0814000 Oryza sativa ssp. japonica HOM05D006718 ORTHO05D008492 1.2e-30 139.0 199 40.7
ATR0068G071 Amborella trichopoda HOM05D006718 ORTHO05D008492 1.5e-30 138.7 584 30.7
Medtr2g067220 Medicago truncatula HOM05D006718 ORTHO05D008492 2.6e-30 137.9 530 33.8
Aa31LG11G11170 Aethionema arabicum HOM05D006718 ORTHO05D008492 7.5e-30 136.3 525 31.4
unitig_899.g15585 Utricularia gibba HOM05D006718 ORTHO05D008492 7.5e-30 136.3 451 32.4
Migut.O00435 Erythranthe guttata HOM05D006718 ORTHO05D008492 1.3e-29 135.6 564 31.4
BcaC04g18692 Brassica carinata HOM05D006718 ORTHO05D008492 2.2e-29 134.8 247 39.7
ECA232G4797 Erigeron canadensis HOM05D006718 ORTHO05D008492 5.4e-28 130.2 584 30.7
TPR.G33809 Trifolium pratense HOM05D006718 ORTHO05D008492 5.4e-28 130.2 548 30.7
Zm00001eb149940 Zea mays HOM05D006718 ORTHO05D008492 9.2e-28 129.4 226 35.8
HPP92_007508 Vanilla planifolia HOM05D006718 ORTHO05D008492 2.0e-27 128.3 536 31.9
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 2.7e-27 127.9 591 29.3
BraA10t44177Z Brassica rapa HOM05D006718 ORTHO05D008492 1.7e-26 125.2 420 31.7
Migut.N01880 Erythranthe guttata HOM05D006718 ORTHO05D008492 2.3e-26 124.8 228 39.0
vmacro20846 Vaccinium macrocarpon HOM05D006718 ORTHO05D008492 5.0e-26 123.6 508 31.7
Lsat_1_v5_gn_4_139420 Lactuca sativa HOM05D006718 ORTHO05D008492 4.3e-25 120.6 570 30.5
HanXRQChr09g0250361 Helianthus annuus HOM05D006718 ORTHO05D008492 7.3e-25 119.8 533 32.1
Cpa.g.sc163.26 Carica papaya HOM05D006718 ORTHO05D008492 4.9e-21 107.1 144 47.2
Pp3c27_4140 Physcomitrium patens HOM05D006718 ORTHO05D008492 6.2e-16 90.1 270 30.4
Mapoly0025s0136 Marchantia polymorpha HOM05D006718 ORTHO05D008492 1.7e-13 82.0 282 27.7
A02p04900 Brassica napus HOM05D006718 ORTHO05D008492 4.6e-11 73.9 410 26.1
CDE04G2801 Ceratophyllum demersum HOM05D001339 ORTHO05D003609 4.6e-11 73.9 535 25.8
BcaB05g23323 Brassica carinata HOM05D006718 ORTHO05D008492 2.0e-06 58.5 127 35.4
Peaxi162Scf00558g00016 Petunia axillaris HOM05D006718 ORTHO05D008492 9.9e-06 56.2 181 28.7


User provided reference genes

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