Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G004310 Cucumis sativus L. HOM05D007506 ORTHO05D008409 7.3e-21 103.6 81 100.0
MELO3C019903.2 Cucumis melo HOM05D007506 ORTHO05D008409 1.7e-17 92.4 84 92.9
ClCG08G008330 Citrullus lanatus HOM05D007506 ORTHO05D008409 2.4e-16 88.6 55 90.9
Sed0023104 Sechium edule HOM05D007506 ORTHO05D008409 1.8e-11 72.4 56 76.8
Cpa.g.sc54.9 Carica papaya HOM05D007506 ORTHO05D008409 9.9e-10 66.6 52 75.0
CSS0050385 Camellia sinensis var. sinensis HOM05D007506 ORTHO05D008409 1.7e-09 65.9 55 65.5
Potri.010G240401 Populus trichocarpa HOM05D007506 ORTHO05D008409 3.7e-09 64.7 55 69.1
Os08g0558900 Oryza sativa ssp. japonica HOM05D007506 ORTHO05D008409 6.4e-09 63.9 57 64.9
Ciclev10017346m.g Citrus clementina HOM05D007506 ORTHO05D008409 8.3e-09 63.5 53 69.8
PGR142G2547 Punica granatum HOM05D007506 ORTHO05D008409 8.3e-09 63.5 54 72.2
Dinv12843 Davidia involucrata HOM05D007506 ORTHO05D008409 1.1e-08 63.2 57 63.2
Manes.07G086800 Manihot esculenta HOM05D007506 ORTHO05D008409 2.4e-08 62.0 53 67.9
RcHm_v2.0_Chr1g0331731 Rosa chinensis HOM05D007506 ORTHO05D008409 2.4e-08 62.0 58 65.5
Migut.F00865 Erythranthe guttata HOM05D007506 ORTHO05D008409 3.2e-08 61.6 57 61.4
Thecc.10G114000 Theobroma cacao HOM05D007506 ORTHO05D008409 5.4e-08 60.8 56 62.5
Zm00001eb252110 Zea mays HOM05D000188 ORTHO05D003976 5.4e-08 60.8 56 66.1
Sabra08G0010500 Salix brachista HOM05D007506 ORTHO05D008409 7.1e-08 60.5 55 63.6
Peaxi162Scf00519g00621 Petunia axillaris HOM05D007506 ORTHO05D008409 9.2e-08 60.1 54 61.1
Cc02_g09560 Coffea canephora HOM05D007506 ORTHO05D008409 1.2e-07 59.7 58 60.3
Hma1.2p1_0756F.1_g213210 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 1.2e-07 59.7 58 56.9
Hma1.2p1_0756F.1_g213215 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 1.2e-07 59.7 58 56.9
Hma1.2p1_1491F.1_g286710 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 1.2e-07 59.7 58 56.9
CiPaw.14G033800 Carya illinoinensis HOM05D007506 ORTHO05D008409 1.6e-07 59.3 55 60.0
Haze_03301 Corylus avellana HOM05D007506 ORTHO05D008409 1.6e-07 59.3 55 63.6
Duzib106G0675 Durio zibethinus HOM05D007506 ORTHO05D008409 1.6e-07 59.3 57 66.7
Nitab4.5_0010633g0010 Nicotiana tabacum HOM05D007506 ORTHO05D008409 1.6e-07 59.3 60 58.3
Potri.008G016801 Populus trichocarpa HOM05D007506 ORTHO05D008409 1.6e-07 59.3 55 61.8
Nitab4.5_0002586g0040 Nicotiana tabacum HOM05D007506 ORTHO05D008409 2.7e-07 58.5 57 57.9
Nitab4.5_0005214g0030 Nicotiana tabacum HOM05D007506 ORTHO05D008409 2.7e-07 58.5 60 58.3
CANSAT56G4328 Cannabis sativa HOM05D007506 ORTHO05D008409 3.5e-07 58.2 55 63.6
Solyc11g006750.1 Solanum lycopersicum HOM05D007506 ORTHO05D008409 4.6e-07 57.8 57 57.9
Zm00001eb039390 Zea mays HOM05D007506 ORTHO05D008409 6.0e-07 57.4 54 63.0
FvH4_7g05151 Fragaria vesca HOM05D007506 ORTHO05D008409 1.0e-06 56.6 53 66.0
FAN05G5073 Fragaria x ananassa HOM05D007506 ORTHO05D008409 1.0e-06 56.6 53 66.0
FAN08G2571 Fragaria x ananassa HOM05D007506 ORTHO05D008409 1.0e-06 56.6 53 66.0
FAN28G2052 Fragaria x ananassa HOM05D007506 ORTHO05D008409 1.0e-06 56.6 53 66.0
Atru.chr12.1049 Acer truncatum HOM05D007506 ORTHO05D008409 1.3e-06 56.2 51 62.7
Medtr1g111840 Medicago truncatula HOM05D007506 ORTHO05D008409 1.3e-06 56.2 55 63.6
Sopen11g002680 Solanum pennellii HOM05D007506 ORTHO05D008409 1.3e-06 56.2 57 56.1
THA.LOC109117254 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 1.3e-06 56.2 64 56.2
TWI38G1985 Tripterygium wilfordii HOM05D007506 ORTHO05D008409 1.3e-06 56.2 52 61.5
THA.LOC104816468 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 2.3e-06 55.5 65 58.5
VMungo0720G0153 Vigna mungo HOM05D007506 ORTHO05D008409 2.3e-06 55.5 55 65.5
Manes.10G062500 Manihot esculenta HOM05D007506 ORTHO05D008409 3.0e-06 55.1 49 67.3
GSVIVG01010679001 Vitis vinifera HOM05D007506 ORTHO05D008409 3.0e-06 55.1 30 90.0
Dinv02210 Davidia involucrata HOM05D007506 ORTHO05D008409 3.9e-06 54.7 55 58.2
Glyma.10G277900 Glycine max HOM05D007506 ORTHO05D008409 3.9e-06 54.7 55 65.5
MD07G1070900 Malus domestica HOM05D007506 ORTHO05D008409 3.9e-06 54.7 49 63.3
Oeu027974.1 Olea europaea HOM05D007506 ORTHO05D008409 3.9e-06 54.7 57 61.4
Ca_25653_v3 Cicer arietinum L. HOM05D007506 ORTHO05D008409 5.1e-06 54.3 55 61.8
HanXRQChr12g0368271 Helianthus annuus HOM05D021830 ORTHO05D008409 5.1e-06 54.3 57 61.4
Peaxi162Scf00125g00216 Petunia axillaris HOM05D007506 ORTHO05D008409 5.1e-06 54.3 57 52.6
Phvul.007G023500 Phaseolus vulgaris HOM05D007506 ORTHO05D008409 5.1e-06 54.3 55 63.6
SalBow3G3829 Salvia bowleyana HOM05D007506 ORTHO05D008409 5.1e-06 54.3 52 61.5
PGSC0003DMG400023979 Solanum tuberosum HOM05D007506 ORTHO05D008409 5.1e-06 54.3 57 56.1
TAR633G2594 Trochodendron aralioides HOM05D007506 ORTHO05D008409 5.1e-06 54.3 55 61.8
HPP92_013812 Vanilla planifolia HOM05D007506 ORTHO05D008409 5.1e-06 54.3 44 65.9
CAN.G1373.1 Capsicum annuum HOM05D007506 ORTHO05D008409 6.6e-06 53.9 58 51.7
CiPaw.13G041100 Carya illinoinensis HOM05D007506 ORTHO05D008409 6.6e-06 53.9 32 78.1
COL.COLO4_37375 Corchorus olitorius HOM05D007506 ORTHO05D008409 6.6e-06 53.9 52 59.6
Lalb_Chr06g0166331 Lupinus albus HOM05D007506 ORTHO05D008409 6.6e-06 53.9 56 62.5
Oeu024806.1 Olea europaea HOM05D007506 ORTHO05D008409 6.6e-06 53.9 56 58.9
unitig_899.g14468 Utricularia gibba HOM05D007506 ORTHO05D008409 6.6e-06 53.9 34 79.4
Lj5g0016646 Lotus japonicus HOM05D007506 ORTHO05D008409 8.6e-06 53.5 55 61.8


User provided reference genes

Program Settings