Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G004260 Cucumis sativus L. HOM05D006196 ORTHO05D007758 2.3e-193 678.7 342 100.0
MELO3C019897.2 Cucumis melo HOM05D006196 ORTHO05D007758 2.9e-188 661.8 342 96.8
ClCG08G008290 Citrullus lanatus HOM05D006196 ORTHO05D007758 1.2e-170 603.2 339 88.8
Sed0021157 Sechium edule HOM05D006196 ORTHO05D007758 7.5e-160 567.4 351 81.2
Sed0008038 Sechium edule HOM05D006196 ORTHO05D007758 2.0e-149 532.7 339 77.9
Haze_03294 Corylus avellana HOM05D006196 ORTHO05D007758 4.5e-112 408.7 324 63.0
Lj2C33T17 Lonicera japonica HOM05D006196 ORTHO05D007758 7.4e-107 391.3 335 60.3
QL04p046737 Quercus lobata HOM05D006196 ORTHO05D007758 7.4e-107 391.3 358 57.5
Hma1.2p1_0457F.1_g156990 Hydrangea macrophylla HOM05D006196 ORTHO05D007758 6.2e-106 388.3 295 64.7
Thecc.10G115000 Theobroma cacao HOM05D006196 ORTHO05D007758 6.2e-106 388.3 337 59.1
CSS0023098 Camellia sinensis var. sinensis HOM05D006196 ORTHO05D007758 1.8e-105 386.7 335 59.4
CiPaw.13G040700 Carya illinoinensis HOM05D006196 ORTHO05D007758 4.0e-105 385.6 323 60.1
Duzib114G0383 Durio zibethinus HOM05D006196 ORTHO05D007758 2.6e-104 382.9 329 60.5
TAR623G1022 Trochodendron aralioides HOM05D006196 ORTHO05D007758 2.2e-103 379.8 327 59.0
Oeu026604.1 Olea europaea HOM05D006196 ORTHO05D007758 1.2e-101 374.0 340 56.2
Cpa.g.sc56.1 Carica papaya HOM05D006196 ORTHO05D007758 4.6e-101 372.1 336 56.2
Atru.chr12.1044 Acer truncatum HOM05D006196 ORTHO05D007758 6.0e-101 371.7 342 58.8
Actinidia18628 Actinidia chinensis HOM05D006196 ORTHO05D007758 1.0e-100 370.9 324 59.3
COL.COLO4_29746 Corchorus olitorius HOM05D006196 ORTHO05D007758 1.0e-100 370.9 326 58.0
Manes.07G086900 Manihot esculenta HOM05D006196 ORTHO05D007758 4.3e-99 365.5 324 59.9
Manes.10G062200 Manihot esculenta HOM05D006196 ORTHO05D007758 2.2e-98 363.2 323 59.8
Cc02_g09600 Coffea canephora HOM05D006196 ORTHO05D007758 8.2e-98 361.3 342 55.3
Rhsim03G0097800 Rhododendron simsii HOM05D006196 ORTHO05D007758 8.2e-98 361.3 346 56.4
Gorai.012G020000 Gossypium raimondii HOM05D006196 ORTHO05D007758 1.1e-97 360.9 324 57.4
Nitab4.5_0002586g0080 Nicotiana tabacum HOM05D006196 ORTHO05D007758 1.4e-97 360.5 343 57.1
Solyc11g006830.2 Solanum lycopersicum HOM05D006196 ORTHO05D007758 3.1e-97 359.4 336 56.8
Sopen11g002750 Solanum pennellii HOM05D006196 ORTHO05D007758 4.1e-97 359.0 336 56.8
Gohir.D04G017300 Gossypium hirsutum HOM05D006196 ORTHO05D007758 5.3e-97 358.6 324 57.4
Lsat_1_v5_gn_2_104380 Lactuca sativa HOM05D006196 ORTHO05D007758 9.0e-97 357.8 301 60.1
Potri.008G019700 Populus trichocarpa HOM05D006196 ORTHO05D007758 1.2e-96 357.5 329 58.1
THA.LOC104811342 Tarenaya hassleriana HOM05D006196 ORTHO05D007758 1.2e-96 357.5 351 52.4
PGSC0003DMG400023969 Solanum tuberosum HOM05D006196 ORTHO05D007758 1.5e-96 357.1 335 57.0
Nitab4.5_0003590g0020 Nicotiana tabacum HOM05D006196 ORTHO05D007758 2.0e-96 356.7 341 56.3
Gohir.A05G398600 Gossypium hirsutum HOM05D006196 ORTHO05D007758 3.4e-96 355.9 324 57.1
Sabra10G0187700 Salix brachista HOM05D006196 ORTHO05D007758 5.9e-96 355.1 323 56.3
HanXRQChr07g0194291 Helianthus annuus HOM05D006196 ORTHO05D007758 7.6e-96 354.8 297 60.3
Potri.010G239700 Populus trichocarpa HOM05D006196 ORTHO05D007758 1.7e-95 353.6 319 56.1
Migut.F00871 Erythranthe guttata HOM05D006196 ORTHO05D007758 2.9e-95 352.8 340 53.2
ECA238G1493 Erigeron canadensis HOM05D006196 ORTHO05D007758 1.1e-94 350.9 297 59.6
MSTRG.27569 Avicennia marina HOM05D006196 ORTHO05D007758 1.4e-94 350.5 341 54.0
HanXRQChr11g0342081 Helianthus annuus HOM05D006196 ORTHO05D007758 3.2e-94 349.4 292 61.3
CAN.G645.29 Capsicum annuum HOM05D006196 ORTHO05D007758 5.5e-94 348.6 338 54.7
Sabra08G0013000 Salix brachista HOM05D006196 ORTHO05D007758 5.5e-94 348.6 327 56.9
CANSAT56G0980 Cannabis sativa HOM05D006196 ORTHO05D007758 7.9e-93 344.7 334 56.3
Lj5g0013601 Lotus japonicus HOM05D006196 ORTHO05D007758 1.0e-92 344.4 335 55.8
AT3G54290 Arabidopsis thaliana HOM05D006196 ORTHO05D007758 2.3e-92 343.2 340 50.9
Carub.0005s2088 Capsella rubella HOM05D006196 ORTHO05D007758 3.0e-92 342.8 341 51.3
Medtr1g111960 Medicago truncatula HOM05D006196 ORTHO05D007758 1.9e-91 340.1 342 52.9
MSTRG.9056 Avicennia marina HOM05D006196 ORTHO05D007758 2.5e-91 339.7 342 51.8
Lalb_Chr06g0166391 Lupinus albus HOM05D006196 ORTHO05D007758 3.3e-91 339.3 341 54.5
Glyma.20G111300 Glycine max HOM05D006196 ORTHO05D007758 4.3e-91 339.0 329 54.4
TWI38G1704 Tripterygium wilfordii HOM05D006196 ORTHO05D007758 4.3e-91 339.0 324 55.6
AL5G35330 Arabidopsis lyrata HOM05D006196 ORTHO05D007758 7.4e-91 338.2 343 52.2
CARHR164220 Cardamine hirsuta HOM05D006196 ORTHO05D007758 3.7e-90 335.9 346 50.0
Thhalv10010495m.g Eutrema salsugineum HOM05D006196 ORTHO05D007758 3.7e-90 335.9 347 49.9
Psat0s1903g0040 Pisum sativum HOM05D006196 ORTHO05D007758 6.3e-90 335.1 342 55.0
Aa31sc392G30 Aethionema arabicum HOM05D006196 ORTHO05D007758 3.1e-89 332.8 337 50.7
arahy.Tifrunner.gnm1.ann1.EL78PJ Arachis hypogaea HOM05D006196 ORTHO05D007758 4.1e-89 332.4 342 52.6
Sp5g08100 Schrenkiella parvula HOM05D006196 ORTHO05D007758 5.3e-89 332.0 344 49.4
SalBow6G5730 Salvia bowleyana HOM05D006196 ORTHO05D007758 9.1e-89 331.3 340 49.7
arahy.Tifrunner.gnm1.ann1.N25XM0 Arachis hypogaea HOM05D006196 ORTHO05D007758 3.4e-88 329.3 342 52.3
BcaC02g09075 Brassica carinata HOM05D006196 ORTHO05D007758 5.9e-88 328.6 326 50.6
SGA_v2.0_scaffold13G06435 Striga asiatica HOM05D006196 ORTHO05D007758 1.0e-87 327.8 388 47.2
Ca_25660_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 1.3e-87 327.4 341 53.7
BraA04t16248Z Brassica rapa HOM05D006196 ORTHO05D007758 2.2e-87 326.6 326 51.5
VMungo0720G0291 Vigna mungo HOM05D006196 ORTHO05D007758 5.0e-87 325.5 326 53.4
Dinv10931 Davidia involucrata HOM05D006196 ORTHO05D007758 6.5e-87 325.1 259 62.2
TPR.G2427 Trifolium pratense HOM05D006196 ORTHO05D007758 6.5e-87 325.1 331 53.5
MBI01_g16486_MAGBIO Magnolia biondii HOM05D006196 ORTHO05D007758 8.5e-87 324.7 334 52.1
Glyma.10G278400 Glycine max HOM05D006196 ORTHO05D007758 1.1e-86 324.3 328 53.7
unitig_37.g12349 Utricularia gibba HOM05D006196 ORTHO05D007758 1.9e-86 323.6 345 49.9
BcaB02g08483 Brassica carinata HOM05D006196 ORTHO05D007758 2.5e-86 323.2 330 50.3
A04p05460 Brassica napus HOM05D006196 ORTHO05D007758 2.5e-86 323.2 326 50.6
Phvul.007G023000 Phaseolus vulgaris HOM05D006196 ORTHO05D007758 1.2e-85 320.9 326 53.7
GSVIVG01010724001 Vitis vinifera HOM05D006196 ORTHO05D007758 1.2e-85 320.9 271 59.4
Medtr1g050385 Medicago truncatula HOM05D006196 ORTHO05D007758 7.9e-85 318.2 345 52.8
CDE08G0664 Ceratophyllum demersum HOM05D006196 ORTHO05D007758 1.0e-84 317.8 295 51.2
PSO801G0620 Papaver somniferum HOM05D006196 ORTHO05D007758 1.0e-84 317.8 341 49.0
Prupe.2G067800 Prunus persica HOM05D006196 ORTHO05D007758 2.3e-84 316.6 356 52.8
TPR.G10627 Trifolium pratense HOM05D006196 ORTHO05D007758 2.3e-84 316.6 361 50.1
PSO339G1429 Papaver somniferum HOM05D006196 ORTHO05D007758 3.9e-84 315.8 344 48.3
MD07G1059000 Malus domestica HOM05D006196 ORTHO05D007758 6.7e-84 315.1 359 49.6
Hund06787 Selenicereus undatus HOM05D006196 ORTHO05D007758 6.7e-84 315.1 318 53.5
A09p47290 Brassica napus HOM05D006196 ORTHO05D007758 5.7e-83 312.0 289 52.6
BolC8t50558H Brassica oleracea HOM05D006196 ORTHO05D007758 7.4e-83 311.6 289 52.6
BraA09t40190Z Brassica rapa HOM05D006196 ORTHO05D007758 7.4e-83 311.6 289 52.2
C08p29520 Brassica napus HOM05D006196 ORTHO05D007758 2.2e-82 310.1 289 52.2
C04p38140 Brassica napus HOM05D006196 ORTHO05D007758 2.8e-82 309.7 327 48.9
MD07G1059300 Malus domestica HOM05D006196 ORTHO05D007758 2.8e-82 309.7 365 48.2
Lj6g0028083 Lotus japonicus HOM05D006196 ORTHO05D007758 8.2e-82 308.1 343 50.7
Sc09g0005310 Simmondsia chinensis HOM05D006196 ORTHO05D007758 8.2e-82 308.1 308 52.9
Peaxi162Scf00173g00018 Petunia axillaris HOM05D006196 ORTHO05D007758 1.1e-81 307.8 291 57.7
DCAR_019003 Daucus carota HOM05D006196 ORTHO05D007758 9.1e-81 304.7 339 49.3
Psat6g093840 Pisum sativum HOM05D006196 ORTHO05D007758 4.2e-78 295.8 347 49.0
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 2.7e-77 293.1 301 51.2
Ah.06g186650 Amaranthus hybridus HOM05D006196 ORTHO05D007758 8.0e-77 291.6 334 48.5
Glyma.10G111100 Glycine max HOM05D006196 ORTHO05D007758 1.8e-76 290.4 343 50.7
Lalb_Chr01g0010431 Lupinus albus HOM05D006196 ORTHO05D007758 8.8e-76 288.1 374 46.3
Ciclev10015947m.g Citrus clementina HOM05D006196 ORTHO05D007758 6.5e-71 271.9 317 48.6
BcaB01g00209 Brassica carinata HOM05D006196 ORTHO05D007758 9.4e-62 241.5 218 53.2
ATR0820G221 Amborella trichopoda HOM05D006196 ORTHO05D007758 3.4e-59 233.0 210 54.3
BolC4t25389H Brassica oleracea HOM05D006196 ORTHO05D007758 2.0e-56 223.8 193 56.5
HPP92_026086 Vanilla planifolia HOM05D006196 ORTHO05D007758 2.9e-55 219.9 319 40.1
HPP92_025137 Vanilla planifolia HOM05D006196 ORTHO05D007758 4.7e-53 212.6 319 39.8
unitig_46.g18638 Utricularia gibba HOM05D006196 ORTHO05D007758 6.1e-53 212.2 178 60.1
Os01g0861700 Oryza sativa ssp. japonica HOM05D006196 ORTHO05D007758 5.9e-48 195.7 330 37.9
Zm00001eb147080 Zea mays HOM05D006196 ORTHO05D007758 7.3e-46 188.7 319 37.0
Ca_20266_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 5.8e-43 179.1 222 47.7
SMO146G0289 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 9.8e-43 178.3 245 40.4
Mapoly0016s0155 Marchantia polymorpha HOM05D006196 ORTHO05D007758 1.2e-37 161.4 212 39.2
Pp3c12_15440 Physcomitrium patens HOM05D006196 ORTHO05D007758 6.2e-37 159.1 229 39.7
Pp3c25_11830 Physcomitrium patens HOM05D006196 ORTHO05D007758 6.8e-36 155.6 211 41.2
Pp3c3_21020 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.2e-35 154.8 209 42.6
Pp3c13_16840 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.5e-35 154.5 202 42.1
Pp3c16_23080 Physcomitrium patens HOM05D006196 ORTHO05D007758 2.0e-35 154.1 211 40.3
SMO198G0051 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 2.0e-35 154.1 228 39.5
AagrBONN_evm.TU.Sc2ySwM_228.4853 Anthoceros agrestis HOM05D006196 ORTHO05D007758 1.3e-34 151.4 193 43.5
Pp3c16_23090 Physcomitrium patens HOM05D006196 ORTHO05D007758 2.7e-32 143.7 212 37.7
Pp3c6_4750 Physcomitrium patens HOM05D006196 ORTHO05D007758 3.5e-32 143.3 223 36.3
Pp3c25_11860 Physcomitrium patens HOM05D006196 ORTHO05D007758 3.2e-25 120.2 153 41.2
CBR_g31351 Chara braunii HOM05D006196 ORTHO05D007758 3.6e-21 106.7 181 34.3
arahy.Tifrunner.gnm1.ann1.5GK804 Arachis hypogaea HOM05D006196 ORTHO05D007758 5.2e-20 102.8 108 53.7
Zm00001eb366830 Zea mays HOM05D006196 ORTHO05D007758 1.2e-16 91.7 118 44.9
arahy.Tifrunner.gnm1.ann1.K1D1LI Arachis hypogaea HOM05D006196 ORTHO05D007758 1.7e-15 87.8 108 50.9
Actinidia02755 Actinidia chinensis HOM05D006196 ORTHO05D007758 2.3e-15 87.4 73 58.9
unitig_46.g18639 Utricularia gibba HOM05D006196 ORTHO05D007758 6.6e-15 85.9 108 42.6


User provided reference genes

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