Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G004220 Cucumis sativus L. HOM05D007039 ORTHO05D008886 5.2e-110 401.0 191 100.0
MELO3C019894.2 Cucumis melo HOM05D007039 ORTHO05D008886 1.6e-103 379.4 184 97.3
ClCG08G008260 Citrullus lanatus HOM05D007039 ORTHO05D008886 4.1e-99 364.8 185 91.9
Sed0014501 Sechium edule HOM05D007039 ORTHO05D008886 2.5e-88 328.9 183 84.2
CANSAT56G1368 Cannabis sativa HOM05D007039 ORTHO05D008886 4.8e-71 271.6 180 67.8
Cc02_g09650 Coffea canephora HOM05D007039 ORTHO05D008886 1.5e-69 266.5 180 68.9
vmacro10308 Vaccinium macrocarpon HOM05D007039 ORTHO05D008886 1.7e-68 263.1 184 67.9
Oeu025598.1 Olea europaea HOM05D007039 ORTHO05D008886 6.4e-68 261.2 180 68.9
GSVIVG01001001001 Vitis vinifera HOM05D007039 ORTHO05D008886 6.4e-68 261.2 180 66.7
MD02G1261300 Malus domestica HOM05D007039 ORTHO05D008886 8.4e-68 260.8 180 67.2
Rhsim09G0142000 Rhododendron simsii HOM05D007039 ORTHO05D008886 8.4e-68 260.8 180 68.3
CAN.G186.55 Capsicum annuum HOM05D007039 ORTHO05D008886 4.2e-67 258.5 181 66.9
Eucgr.J00258 Eucalyptus grandis HOM05D007039 ORTHO05D008886 5.4e-67 258.1 188 68.1
Prupe.2G067300 Prunus persica HOM05D007039 ORTHO05D008886 9.3e-67 257.3 180 67.8
CSS0047124 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 1.2e-66 256.9 180 66.7
Thecc.07G140700 Theobroma cacao HOM05D007039 ORTHO05D008886 1.2e-66 256.9 180 66.1
HanXRQChr08g0217501 Helianthus annuus HOM05D007039 ORTHO05D008886 1.6e-66 256.5 180 65.0
CiPaw.14G032800 Carya illinoinensis HOM05D007039 ORTHO05D008886 2.1e-66 256.1 180 66.1
Migut.F00878 Erythranthe guttata HOM05D007039 ORTHO05D008886 2.1e-66 256.1 184 67.9
Dinv11837 Davidia involucrata HOM05D007039 ORTHO05D008886 2.7e-66 255.8 180 67.8
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 1.8e-65 253.1 180 63.9
Lj2A32T31 Lonicera japonica HOM05D007039 ORTHO05D008886 2.3e-65 252.7 180 66.7
TWI63G1767 Tripterygium wilfordii HOM05D007039 ORTHO05D008886 2.3e-65 252.7 180 65.0
Ciclev10016452m.g Citrus clementina HOM05D007039 ORTHO05D008886 5.1e-65 251.5 180 65.0
CSS0023700 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 6.7e-65 251.1 180 66.1
PGSC0003DMG400023289 Solanum tuberosum HOM05D007039 ORTHO05D008886 8.7e-65 250.8 182 64.8
PGSC0003DMG400016998 Solanum tuberosum HOM05D007039 ORTHO05D008886 1.9e-64 249.6 181 65.2
MSTRG.9060 Avicennia marina HOM05D007039 ORTHO05D008886 2.5e-64 249.2 179 65.4
RcHm_v2.0_Chr1g0331721 Rosa chinensis HOM05D007039 ORTHO05D008886 2.5e-64 249.2 180 66.7
Sopen04g004820 Solanum pennellii HOM05D007039 ORTHO05D008886 2.5e-64 249.2 181 64.6
QL04p044873 Quercus lobata HOM05D007039 ORTHO05D008886 3.3e-64 248.8 180 64.4
SalBow6G1307 Salvia bowleyana HOM05D007039 ORTHO05D008886 9.6e-64 247.3 180 66.7
Oeu036841.1 Olea europaea HOM05D007039 ORTHO05D008886 1.3e-63 246.9 181 64.6
Lsat_1_v5_gn_8_24101 Lactuca sativa HOM05D007039 ORTHO05D008886 1.6e-63 246.5 180 63.9
Oeu036842.1 Olea europaea HOM05D007039 ORTHO05D008886 2.8e-63 245.7 180 64.4
Solyc04g009700.3 Solanum lycopersicum HOM05D007039 ORTHO05D008886 2.8e-63 245.7 181 63.0
TAR623G0720 Trochodendron aralioides HOM05D007039 ORTHO05D008886 2.8e-63 245.7 180 65.6
SGA_v2.0_scaffold62G21336 Striga asiatica HOM05D007039 ORTHO05D008886 3.6e-63 245.4 180 66.1
Potri.010G238700 Populus trichocarpa HOM05D007039 ORTHO05D008886 4.8e-63 245.0 180 64.4
PSO384G1372 Papaver somniferum HOM05D007039 ORTHO05D008886 8.1e-63 244.2 180 64.4
Sabra10G0186900 Salix brachista HOM05D007039 ORTHO05D008886 1.4e-62 243.4 183 62.3
Sc20g0001160 Simmondsia chinensis HOM05D007039 ORTHO05D008886 1.8e-62 243.0 180 63.3
PSO339G1176 Papaver somniferum HOM05D007039 ORTHO05D008886 3.1e-62 242.3 180 63.9
AUR62041513 Chenopodium quinoa HOM05D007039 ORTHO05D008886 5.3e-62 241.5 180 60.0
Duzib106G1061 Durio zibethinus HOM05D007039 ORTHO05D008886 6.9e-62 241.1 180 62.2
COL.COLO4_17444 Corchorus olitorius HOM05D007039 ORTHO05D008886 1.2e-61 240.4 180 63.9
Manes.07G087400 Manihot esculenta HOM05D007039 ORTHO05D008886 1.5e-61 240.0 180 60.6
arahy.Tifrunner.gnm1.ann1.XC1RGZ Arachis hypogaea HOM05D007039 ORTHO05D008886 2.6e-61 239.2 180 61.7
Nn6g34917 Nelumbo nucifera HOM05D007039 ORTHO05D008886 2.6e-61 239.2 179 64.2
Atru.chr12.1023 Acer truncatum HOM05D007039 ORTHO05D008886 3.4e-61 238.8 180 60.6
Ah.06g186600 Amaranthus hybridus HOM05D007039 ORTHO05D008886 3.4e-61 238.8 180 63.3
Potri.008G020500 Populus trichocarpa HOM05D007039 ORTHO05D008886 3.4e-61 238.8 180 63.9
Hund22275 Selenicereus undatus HOM05D007039 ORTHO05D008886 3.4e-61 238.8 180 61.7
FvH4_7g05130 Fragaria vesca HOM05D007039 ORTHO05D008886 4.5e-61 238.4 179 64.2
FAN01G2006 Fragaria x ananassa HOM05D007039 ORTHO05D008886 4.5e-61 238.4 180 64.4
arahy.Tifrunner.gnm1.ann1.2NV5LW Arachis hypogaea HOM05D007039 ORTHO05D008886 7.6e-61 237.7 180 61.7
FAN06G3803 Fragaria x ananassa HOM05D007039 ORTHO05D008886 7.6e-61 237.7 180 63.3
Eucgr.J00257 Eucalyptus grandis HOM05D007039 ORTHO05D008886 9.9e-61 237.3 179 65.4
PGR142G0235 Punica granatum HOM05D007039 ORTHO05D008886 9.9e-61 237.3 178 64.0
THA.LOC104801579 Tarenaya hassleriana HOM05D007039 ORTHO05D008886 1.3e-60 236.9 180 60.0
Gohir.D06G182700 Gossypium hirsutum HOM05D007039 ORTHO05D008886 2.9e-60 235.7 180 61.1
Aqoxy2G01207 Aquilegia oxysepala HOM05D007039 ORTHO05D008886 4.9e-60 235.0 180 60.6
Ca_25665_v3 Cicer arietinum L. HOM05D007039 ORTHO05D008886 6.4e-60 234.6 181 62.4
FAN03G1588 Fragaria x ananassa HOM05D007039 ORTHO05D008886 6.4e-60 234.6 180 62.8
AUR62042080 Chenopodium quinoa HOM05D007039 ORTHO05D008886 8.4e-60 234.2 165 61.8
EL10Ac4g08687 Beta vulgaris HOM05D007039 ORTHO05D008886 1.4e-59 233.4 176 61.9
FAN10G1571 Fragaria x ananassa HOM05D007039 ORTHO05D008886 1.9e-59 233.0 178 64.0
Gorai.010G214000 Gossypium raimondii HOM05D007039 ORTHO05D008886 1.9e-59 233.0 180 60.6
MD07G1059500 Malus domestica HOM05D007039 ORTHO05D008886 2.4e-59 232.6 180 61.7
Medtr1g112080 Medicago truncatula HOM05D007039 ORTHO05D008886 2.4e-59 232.6 181 61.3
TPR.G2471 Trifolium pratense HOM05D007039 ORTHO05D008886 4.2e-59 231.9 181 59.7
Gohir.A06G173100 Gossypium hirsutum HOM05D007039 ORTHO05D008886 1.2e-58 230.3 180 58.9
Gohir.D06G183000 Gossypium hirsutum HOM05D007039 ORTHO05D008886 1.2e-58 230.3 180 58.9
Gorai.010G214100 Gossypium raimondii HOM05D007039 ORTHO05D008886 2.1e-58 229.6 180 59.4
Lalb_Chr06g0166411 Lupinus albus HOM05D007039 ORTHO05D008886 3.5e-58 228.8 180 60.0
Gohir.D06G183100 Gossypium hirsutum HOM05D007039 ORTHO05D008886 6.0e-58 228.0 180 59.4
unitig_748.g8774 Utricularia gibba HOM05D007039 ORTHO05D008886 1.3e-57 226.9 180 60.0
Zm00001eb366890 Zea mays HOM05D007039 ORTHO05D008886 3.0e-57 225.7 180 57.8
CSS0008887 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 5.1e-57 224.9 178 62.4
Psat6g231000 Pisum sativum HOM05D007039 ORTHO05D008886 5.1e-57 224.9 181 60.8
HPP92_006806 Vanilla planifolia HOM05D007039 ORTHO05D008886 5.1e-57 224.9 180 59.4
Glyma.20G110700 Glycine max HOM05D007039 ORTHO05D008886 2.5e-56 222.6 181 58.0
Phvul.007G022300 Phaseolus vulgaris HOM05D007039 ORTHO05D008886 2.5e-56 222.6 181 57.5
Zm00001eb147230 Zea mays HOM05D007039 ORTHO05D008886 3.3e-56 222.2 180 57.2
Lj5g0024269 Lotus japonicus HOM05D007039 ORTHO05D008886 7.4e-56 221.1 181 59.1
VMungo0720G0617 Vigna mungo HOM05D007039 ORTHO05D008886 7.4e-56 221.1 181 55.8
TAR633G1803 Trochodendron aralioides HOM05D007039 ORTHO05D008886 6.2e-55 218.0 179 56.4
Os01g0859400 Oryza sativa ssp. japonica HOM05D007039 ORTHO05D008886 1.8e-54 216.5 180 56.7
Peaxi162Scf00195g01020 Petunia axillaris HOM05D007039 ORTHO05D008886 5.8e-53 211.5 167 61.7
Nitab4.5_0003927g0060 Nicotiana tabacum HOM05D007039 ORTHO05D008886 4.9e-52 208.4 181 59.1
CDE08G0883 Ceratophyllum demersum HOM05D007039 ORTHO05D008886 5.5e-51 204.9 147 61.9
CSS0041399 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 1.3e-49 200.3 175 59.4
Cpa.g.sc56.15 Carica papaya HOM05D007039 ORTHO05D008886 2.1e-47 193.0 127 64.6
HPP92_009768 Vanilla planifolia HOM05D007039 ORTHO05D008886 1.2e-45 187.2 180 47.2
ECA233G2799 Erigeron canadensis HOM05D007039 ORTHO05D008886 5.9e-45 184.9 129 62.0
HPP92_009745 Vanilla planifolia HOM05D007039 ORTHO05D008886 1.7e-44 183.3 180 46.7
Zm00001eb092690 Zea mays HOM05D007039 ORTHO05D008886 8.5e-44 181.0 180 47.2
DCAR_019005 Daucus carota HOM05D007039 ORTHO05D008886 4.2e-43 178.7 111 67.6
Dinv09617 Davidia involucrata HOM05D007039 ORTHO05D008886 1.6e-42 176.8 180 53.3
Zm00001eb197030 Zea mays HOM05D007039 ORTHO05D008886 3.6e-42 175.6 178 45.5
Mapoly0010s0050 Marchantia polymorpha HOM05D007039 ORTHO05D008886 7.9e-42 174.5 180 46.1
Os12g0152800 Oryza sativa ssp. japonica HOM05D007039 ORTHO05D008886 1.9e-40 169.9 181 44.2
AagrBONN_evm.TU.Sc2ySwM_362.1562 Anthoceros agrestis HOM05D007039 ORTHO05D008886 7.4e-40 167.9 180 44.4
SMO367G0592 Selaginella moellendorffii HOM05D007039 ORTHO05D008886 2.0e-37 159.8 155 49.0
SMO353G0277 Selaginella moellendorffii HOM05D007039 ORTHO05D008886 5.0e-36 155.2 187 44.4
AagrBONN_evm.TU.Sc2ySwM_228.3073 Anthoceros agrestis HOM05D007039 ORTHO05D008886 5.5e-35 151.8 182 41.2
Glyma.10G279000 Glycine max HOM05D007039 ORTHO05D008886 7.2e-35 151.4 180 45.6
CBR_g32363 Chara braunii HOM05D007039 ORTHO05D008886 1.6e-34 150.2 148 45.9
Pp3c15_5790 Physcomitrium patens HOM05D007039 ORTHO05D008886 4.6e-34 148.7 181 41.4
MD04G1248500 Malus domestica HOM05D007039 ORTHO05D008886 2.6e-24 116.3 105 56.2
Cre01.g018100 Chlamydomonas reinhardtii HOM05D007039 ORTHO05D008886 8.0e-18 94.7 157 33.1
Nitab4.5_0000691g0070 Nicotiana tabacum HOM05D007039 ORTHO05D008886 1.1e-14 84.3 67 68.7
PRCOL_00002076 Prasinoderma coloniale HOM05D007039 ORTHO05D008886 6.3e-07 58.5 65 38.5


User provided reference genes

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