Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G004110 Cucumis sativus L. HOM05D005926 ORTHO05D007001 0.0e+00 1313.5 672 100.0
MELO3C019887.2 Cucumis melo HOM05D005926 ORTHO05D007001 0.0e+00 1226.8 689 92.0
ClCG08G008140 Citrullus lanatus HOM05D005926 ORTHO05D007001 0.0e+00 1166.8 674 89.8
Sed0000046 Sechium edule HOM05D005926 ORTHO05D007001 1.3e-240 836.6 610 74.8
Sed0009709 Sechium edule HOM05D005926 ORTHO05D007001 1.8e-234 816.2 674 68.8
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 7.9e-129 465.3 702 46.0
FAN10G2760 Fragaria x ananassa HOM05D005926 ORTHO05D007001 1.9e-127 460.7 595 51.3
FvH4_7g05860 Fragaria vesca HOM05D005926 ORTHO05D007001 9.7e-127 458.4 584 51.5
FAN03G1852 Fragaria x ananassa HOM05D005926 ORTHO05D007001 1.4e-125 454.5 583 51.5
CiPaw.14G029200 Carya illinoinensis HOM05D005926 ORTHO05D007001 3.1e-125 453.4 737 45.3
Manes.07G090100 Manihot esculenta HOM05D005926 ORTHO05D007001 2.0e-124 450.7 702 45.3
Prupe.2G085400 Prunus persica HOM05D005926 ORTHO05D007001 6.5e-123 445.7 731 46.4
RcHm_v2.0_Chr1g0333121 Rosa chinensis HOM05D005926 ORTHO05D007001 1.4e-122 444.5 585 50.6
Duzib128G1763 Durio zibethinus HOM05D005926 ORTHO05D007001 3.6e-121 439.9 713 44.6
MD02G1248000 Malus domestica HOM05D005926 ORTHO05D007001 2.0e-116 424.1 562 52.3
MD07G1068100 Malus domestica HOM05D005926 ORTHO05D007001 2.6e-116 423.7 557 52.1
CANSAT56G4130 Cannabis sativa HOM05D005926 ORTHO05D007001 2.9e-115 420.2 703 45.2
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 6.5e-115 419.1 705 46.0
Thecc.10G111000 Theobroma cacao HOM05D005926 ORTHO05D007001 4.6e-113 412.9 716 43.7
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 1.5e-111 407.9 681 45.5
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 2.5e-106 390.6 704 43.0
TWI63G0673 Tripterygium wilfordii HOM05D005926 ORTHO05D007001 1.4e-104 384.8 700 41.7
Duzib106G0448 Durio zibethinus HOM05D005926 ORTHO05D007001 3.0e-104 383.6 725 42.8
Gorai.012G020100 Gossypium raimondii HOM05D005926 ORTHO05D007001 5.7e-103 379.4 755 40.1
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 3.7e-102 376.7 756 39.9
Gohir.D04G017400 Gossypium hirsutum HOM05D005926 ORTHO05D007001 4.8e-102 376.3 752 40.2
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 2.3e-96 357.5 686 40.7
Potri.008G025000 Populus trichocarpa HOM05D005926 ORTHO05D007001 6.7e-96 355.9 705 41.3
Ca_10497_v3 Cicer arietinum L. HOM05D005926 ORTHO05D007001 5.7e-95 352.8 694 39.3
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 2.8e-94 350.5 683 39.5
Sabra10G0182600 Salix brachista HOM05D005926 ORTHO05D007001 3.7e-94 350.1 780 39.4
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 6.3e-94 349.4 790 38.0
Sabra08G0016800 Salix brachista HOM05D005926 ORTHO05D007001 5.9e-92 342.8 701 40.7
TAR623G1319 Trochodendron aralioides HOM05D005926 ORTHO05D007001 5.9e-92 342.8 709 40.3
vmacro07227 Vaccinium macrocarpon HOM05D005926 ORTHO05D007001 1.7e-91 341.3 700 39.6
Lj5g0002236 Lotus japonicus HOM05D005926 ORTHO05D007001 2.9e-91 340.5 544 45.8
Medtr1g492840 Medicago truncatula HOM05D005926 ORTHO05D007001 1.9e-90 337.8 706 38.8
Eucgr.G02709 Eucalyptus grandis HOM05D005926 ORTHO05D007001 4.7e-89 333.2 705 38.9
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 8.0e-89 332.4 682 39.3
GSVIVG01034734001 Vitis vinifera HOM05D005926 ORTHO05D007001 2.3e-88 330.9 741 39.1
CSS0031564 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 9.8e-87 325.5 694 38.9
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 1.3e-86 325.1 712 39.2
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 2.4e-85 320.9 662 38.4
TPR.G2562 Trifolium pratense HOM05D005926 ORTHO05D007001 2.0e-84 317.8 661 38.6
CSS0031315 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 5.9e-84 316.2 704 37.8
Cpa.g.sc19.23 Carica papaya HOM05D005926 ORTHO05D007001 1.1e-82 312.0 823 34.4
Lalb_Chr03g0036371 Lupinus albus HOM05D005926 ORTHO05D007001 1.0e-80 305.4 687 38.1
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 1.8e-80 304.7 538 45.2
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 5.7e-79 299.7 695 37.1
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 5.7e-79 299.7 574 43.7
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 1.7e-78 298.1 700 37.3
arahy.Tifrunner.gnm1.ann1.J9ASUV Arachis hypogaea HOM05D005926 ORTHO05D007001 2.8e-78 297.4 560 41.1
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 1.6e-76 291.6 708 36.0
Nitab4.5_0001027g0040 Nicotiana tabacum HOM05D005926 ORTHO05D007001 4.5e-76 290.0 724 36.6
PGR142G4330 Punica granatum HOM05D005926 ORTHO05D007001 5.6e-74 283.1 693 37.8
Sc06g0002210 Simmondsia chinensis HOM05D005926 ORTHO05D007001 7.3e-74 282.7 707 35.9
VMungo0720G0267 Vigna mungo HOM05D005926 ORTHO05D007001 9.5e-74 282.3 646 36.8
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 2.8e-73 280.8 701 36.9
Nitab4.5_0003396g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.0e-72 278.9 590 39.5
Nn6g35019 Nelumbo nucifera HOM05D005926 ORTHO05D007001 1.8e-72 278.1 591 40.3
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 1.8e-72 278.1 685 36.5
Aqoxy4G02869 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 2.3e-72 277.7 697 36.2
CSS0037332 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 4.0e-72 276.9 774 33.6
Hma1.2p1_0010F.1_g007030 Hydrangea macrophylla HOM05D005926 ORTHO05D007001 2.0e-71 274.6 472 45.8
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 2.2e-70 271.2 708 36.2
CSS0015422 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 6.4e-70 269.6 734 34.6
TAR369G1114 Trochodendron aralioides HOM05D005926 ORTHO05D007001 6.4e-70 269.6 772 34.2
TAR636G3019 Trochodendron aralioides HOM05D005926 ORTHO05D007001 6.4e-70 269.6 634 38.5
Migut.F00893 Erythranthe guttata HOM05D005926 ORTHO05D007001 1.1e-69 268.9 673 37.6
Nitab4.5_0002878g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 3.0e-67 260.8 671 36.2
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 1.9e-66 258.1 706 35.7
Aqoxy2G01361 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 2.3e-64 251.1 528 37.7
DCAR_014349 Daucus carota HOM05D005926 ORTHO05D007001 4.0e-64 250.4 569 39.2
CARHR161990 Cardamine hirsuta HOM05D005926 ORTHO05D007001 6.8e-64 249.6 609 34.5
Haze_02593 Corylus avellana HOM05D005926 ORTHO05D007001 1.7e-62 245.0 300 53.7
AL5G32830 Arabidopsis lyrata HOM05D005926 ORTHO05D007001 4.9e-62 243.4 645 35.3
Nitab4.5_0012334g0010 Nicotiana tabacum HOM05D005926 ORTHO05D007001 4.9e-62 243.4 662 36.3
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 9.2e-61 239.2 560 38.2
THA.LOC104814724 Tarenaya hassleriana HOM05D005926 ORTHO05D007001 2.7e-60 237.7 681 34.1
Actinidia28534 Actinidia chinensis HOM05D005926 ORTHO05D007001 7.8e-60 236.1 602 34.6
AT3G52240 Arabidopsis thaliana HOM05D005926 ORTHO05D007001 1.3e-59 235.3 635 35.1
EL10Ac4g08669 Beta vulgaris HOM05D005926 ORTHO05D007001 1.3e-59 235.3 696 33.2
Sp5g10020 Schrenkiella parvula HOM05D005926 ORTHO05D007001 1.3e-59 235.3 592 35.5
Thhalv10010215m.g Eutrema salsugineum HOM05D005926 ORTHO05D007001 1.7e-59 235.0 585 35.2
ECA232G4290 Erigeron canadensis HOM05D005926 ORTHO05D007001 2.3e-59 234.6 568 37.0
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 5.0e-59 233.4 535 38.3
BcaB02g08582 Brassica carinata HOM05D005926 ORTHO05D007001 1.2e-57 228.8 591 36.2
Carub.0005s1860 Capsella rubella HOM05D005926 ORTHO05D007001 2.8e-57 227.6 644 34.2
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 2.8e-57 227.6 512 38.3
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 4.7e-57 226.9 481 39.3
arahy.Tifrunner.gnm1.ann1.9BC44J Arachis hypogaea HOM05D005926 ORTHO05D007001 1.1e-56 225.7 493 38.1
HanXRQChr05g0147041 Helianthus annuus HOM05D005926 ORTHO05D007001 1.8e-56 224.9 582 36.4
C04p40700 Brassica napus HOM05D005926 ORTHO05D007001 4.0e-56 223.8 616 36.0
BolC4t25653H Brassica oleracea HOM05D005926 ORTHO05D007001 6.8e-56 223.0 602 35.9
AUR62041545 Chenopodium quinoa HOM05D005926 ORTHO05D007001 3.4e-55 220.7 553 36.7
BraA09t39993Z Brassica rapa HOM05D005926 ORTHO05D007001 9.9e-55 219.2 565 35.0
BcaC02g09269 Brassica carinata HOM05D005926 ORTHO05D007001 1.3e-54 218.8 616 35.7
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 1.3e-54 218.8 483 38.1
C08p27480 Brassica napus HOM05D005926 ORTHO05D007001 3.7e-54 217.2 579 34.4
BolC8t50365H Brassica oleracea HOM05D005926 ORTHO05D007001 3.7e-54 217.2 579 34.4
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 8.3e-54 216.1 592 32.8
A04p07120 Brassica napus HOM05D005926 ORTHO05D007001 1.1e-53 215.7 616 34.4
A09p45300 Brassica napus HOM05D005926 ORTHO05D007001 1.1e-53 215.7 696 32.0
Aa31LG10G7340 Aethionema arabicum HOM05D005926 ORTHO05D007001 7.1e-53 213.0 634 33.4
BraA04t16409Z Brassica rapa HOM05D005926 ORTHO05D007001 1.2e-52 212.2 580 34.8
PSO339G4155 Papaver somniferum HOM05D005926 ORTHO05D007001 3.5e-52 210.7 530 36.2
PSO384G0761 Papaver somniferum HOM05D005926 ORTHO05D007001 4.6e-52 210.3 527 35.3
Dinv20819 Davidia involucrata HOM05D005926 ORTHO05D007001 1.2e-49 202.2 345 41.7
BcaC07g39594 Brassica carinata HOM05D005926 ORTHO05D007001 4.7e-49 200.3 554 33.6
Lsat_1_v5_gn_6_90261 Lactuca sativa HOM05D005926 ORTHO05D007001 1.3e-46 192.2 532 35.0
PSO443G0029 Papaver somniferum HOM05D005926 ORTHO05D007001 3.8e-38 164.1 389 39.3
CDE04G2986 Ceratophyllum demersum HOM05D005926 ORTHO05D007001 5.4e-37 160.2 531 32.6
Os05g0445800 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 3.5e-36 157.5 368 37.5
Haze_02594 Corylus avellana HOM05D005926 ORTHO05D007001 1.6e-33 148.7 418 33.5
GSVIVG01031385001 Vitis vinifera HOM05D005926 ORTHO05D007001 2.8e-33 147.9 566 31.4
Os05g0446500 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 6.9e-32 143.3 343 36.4
unitig_0.g760 Utricularia gibba HOM05D005926 ORTHO05D007001 9.9e-31 139.4 556 29.9
Zm00001eb289020 Zea mays HOM05D005926 ORTHO05D007001 9.9e-31 139.4 317 36.9
ATR0820G003 Amborella trichopoda HOM05D005926 ORTHO05D007001 2.1e-28 131.7 586 29.7
Zm00001eb147390 Zea mays HOM05D005926 ORTHO05D007001 3.0e-27 127.9 497 30.8
arahy.Tifrunner.gnm1.ann1.UA3HQT Arachis hypogaea HOM05D005926 ORTHO05D007001 9.6e-26 122.9 285 36.5
arahy.Tifrunner.gnm1.ann1.L8M84U Arachis hypogaea HOM05D005926 ORTHO05D007001 1.4e-24 119.0 285 36.1
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 2.9e-22 111.3 180 43.9
Os04g0646050 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 4.9e-22 110.5 166 46.4
SEGI_23583 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 2.3e-19 101.7 367 31.6
Oeu026567.1 Olea europaea HOM05D005926 ORTHO05D007001 3.7e-17 94.4 417 28.8
AagrBONN_evm.TU.Sc2ySwM_228.4811 Anthoceros agrestis HOM05D005926 ORTHO05D007001 1.1e-08 66.2 340 27.6


User provided reference genes

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