Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 0.0e+00 1132.9 579 100.0
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 1.5e-293 1012.3 556 93.3
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 6.3e-260 900.6 673 72.4
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 3.3e-232 808.5 552 74.3
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 8.9e-129 464.9 567 48.9
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 3.9e-124 449.5 568 46.1
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 1.7e-119 434.1 566 46.6
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 2.1e-117 427.2 567 46.9
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 5.1e-116 422.5 564 45.9
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 1.1e-115 421.4 619 43.6
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 1.4e-113 414.5 628 42.7
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 4.4e-112 409.5 580 45.2
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 2.4e-110 403.7 632 42.4
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 3.4e-104 383.3 585 43.2
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 9.9e-104 381.7 566 45.1
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 9.9e-104 381.7 589 43.0
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 8.4e-103 378.6 563 43.3
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 3.2e-102 376.7 562 41.6
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 5.4e-102 375.9 571 41.3
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 9.3e-102 375.2 605 40.2
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 6.0e-101 372.5 554 41.5
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 1.0e-100 371.7 547 41.5
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 2.5e-99 367.1 597 40.5
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.3e-98 364.8 640 37.7
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 2.1e-98 364.0 640 38.1
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 2.8e-98 363.6 308 60.1
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 3.1e-97 360.1 554 40.8
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 4.0e-97 359.8 556 40.1
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 9.0e-97 358.6 578 41.3
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 2.6e-96 357.1 592 40.7
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.4e-96 356.7 563 40.7
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 3.4e-96 356.7 566 38.3
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 2.2e-95 354.0 556 39.4
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 4.2e-94 349.7 569 38.5
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 3.5e-93 346.7 557 38.4
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 1.0e-92 345.1 567 38.8
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 3.9e-92 343.2 557 39.1
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 8.7e-92 342.0 576 39.1
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 3.3e-91 340.1 466 42.3
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 1.3e-90 338.2 580 37.6
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 2.8e-90 337.0 566 40.6
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 4.8e-90 336.3 560 38.4
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 6.2e-90 335.9 558 40.0
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 2.4e-89 334.0 316 52.2
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.0e-88 330.9 612 38.2
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 2.6e-88 330.5 635 35.0
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 3.4e-88 330.1 553 40.5
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 1.7e-87 327.8 572 37.2
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.4e-86 324.7 635 37.0
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 4.2e-86 323.2 561 39.9
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 9.3e-86 322.0 625 37.0
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 6.0e-85 319.3 273 61.9
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.3e-84 317.4 312 53.2
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.5e-83 314.7 628 35.0
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 1.9e-83 314.3 557 38.2
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 3.3e-83 313.5 667 35.5
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 5.6e-83 312.8 310 53.2
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 9.6e-83 312.0 554 37.2
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 9.6e-83 312.0 319 52.0
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 9.0e-81 305.4 326 50.6
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 2.2e-79 300.8 758 31.8
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 1.6e-77 294.7 394 43.1
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 1.6e-77 294.7 459 41.0
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 2.1e-77 294.3 554 33.8
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 2.1e-77 294.3 718 33.7
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 5.1e-76 289.7 552 36.4
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 2.5e-75 287.3 566 34.1
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.5e-75 287.3 568 35.6
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 4.3e-75 286.6 553 34.9
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 7.4e-75 285.8 300 51.0
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 2.4e-73 280.8 552 35.9
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 3.1e-73 280.4 527 36.2
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 5.3e-73 279.6 361 46.0
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 6.9e-73 279.3 640 34.1
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 6.9e-73 279.3 311 48.2
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 3.4e-72 276.9 566 36.2
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 3.4e-72 276.9 304 49.7
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 1.7e-71 274.6 547 34.7
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 4.2e-70 270.0 576 34.7
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 7.2e-70 269.2 602 33.7
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 6.1e-69 266.2 472 37.9
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.3e-68 265.0 664 31.5
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 1.3e-68 265.0 307 47.6
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 1.3e-68 265.0 563 35.0
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 5.1e-68 263.1 569 34.4
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 1.9e-67 261.2 316 44.3
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 7.4e-67 259.2 310 44.5
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 9.7e-67 258.8 672 33.2
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 8.2e-66 255.8 554 35.2
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 1.1e-65 255.4 563 33.7
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 3.1e-65 253.8 563 34.3
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 6.9e-65 252.7 562 34.2
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 6.9e-65 252.7 309 43.4
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.2e-64 251.9 673 30.0
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 7.7e-64 249.2 576 32.6
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 7.7e-64 249.2 281 47.0
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 1.3e-63 248.4 308 46.1
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.7e-63 248.1 380 41.1
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 5.5e-62 243.0 305 44.3
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 1.2e-61 241.9 337 41.2
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.2e-61 241.9 265 49.4
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 1.6e-61 241.5 322 43.8
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 7.9e-61 239.2 569 32.0
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 1.0e-60 238.8 551 33.4
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 1.4e-60 238.4 338 41.4
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 3.9e-60 236.9 376 40.7
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 3.9e-60 236.9 629 31.3
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 3.3e-59 233.8 325 40.9
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.7e-58 231.5 224 53.1
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.0e-55 222.2 552 31.5
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 2.2e-55 221.1 531 35.6
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 2.2e-55 221.1 227 54.6
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 5.5e-54 216.5 563 30.9
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 9.4e-54 215.7 353 40.2
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 9.4e-54 215.7 366 36.9
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 2.1e-53 214.5 226 52.2
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 3.0e-52 210.7 586 31.2
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 5.2e-52 209.9 268 46.3
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 7.0e-49 199.5 368 36.4
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 1.8e-44 184.9 298 38.3
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 2.0e-40 171.4 181 51.4
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.1e-38 165.6 193 48.2
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.1e-38 165.6 193 48.2
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 4.7e-37 160.2 353 32.9
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 4.2e-30 137.1 229 40.6
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 2.2e-26 124.8 310 28.7
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 4.9e-26 123.6 637 24.8
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 5.9e-24 116.7 446 26.9
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 4.3e-22 110.5 305 32.1
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 2.1e-21 108.2 146 44.5
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 1.4e-20 105.5 171 38.6
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 3.4e-19 100.9 121 43.0
Haze_01516 Corylus avellana HOM05D004076 ORTHO05D004606 6.4e-18 96.7 227 35.7
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 2.4e-17 94.7 103 45.6
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 9.5e-14 82.8 104 50.0
Lj6A56G23 Lonicera japonica HOM05D004076 ORTHO05D004606 8.0e-13 79.7 157 38.2
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 1.4e-09 68.9 181 33.1
Glyma.12G052967 Glycine max HOM05D004076 ORTHO05D004606 1.9e-09 68.6 271 29.9
Gohir.D09G203266 Gossypium hirsutum HOM05D004076 ORTHO05D004606 1.9e-09 68.6 70 55.7
Lj8A15T43 Lonicera japonica HOM05D004076 ORTHO05D004606 4.3e-06 57.4 122 35.2


User provided reference genes

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