Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G003590 Cucumis sativus L. HOM05D003443 ORTHO05D008640 2.2e-79 298.9 153 100.0
MELO3C011587.2 Cucumis melo HOM05D003443 ORTHO05D008640 5.1e-76 287.7 151 96.0
MELO3C011304.2 Cucumis melo HOM05D003443 ORTHO05D008640 1.2e-72 276.6 163 88.3
ClCG08G005410 Citrullus lanatus HOM05D003443 ORTHO05D008640 1.4e-60 236.5 230 60.0
Sed0028054 Sechium edule HOM05D003443 ORTHO05D008640 5.5e-54 214.5 153 73.9
Cfa015987 Carpinus fangiana HOM05D003443 ORTHO05D009887 5.6e-30 134.8 134 55.2
Dinv40389 Davidia involucrata HOM05D003443 ORTHO05D008640 5.6e-30 134.8 156 53.2
AUR62004720 Chenopodium quinoa HOM05D003443 ORTHO05D008640 7.3e-30 134.4 148 52.0
Haze_00480 Corylus avellana HOM05D003443 ORTHO05D008640 1.2e-29 133.7 134 55.2
Thecc.08G121300 Theobroma cacao HOM05D003443 ORTHO05D008640 1.6e-29 133.3 133 52.6
QL08p024382 Quercus lobata HOM05D003443 ORTHO05D008640 3.6e-29 132.1 133 56.4
Ca_26970_v3 Cicer arietinum L. HOM05D003443 ORTHO05D008640 4.7e-29 131.7 148 53.4
Medtr5g058660 Medicago truncatula HOM05D003443 ORTHO05D008640 6.2e-29 131.3 148 52.0
Medtr5g059030 Medicago truncatula HOM05D003443 ORTHO05D008640 6.2e-29 131.3 148 52.0
Ciclev10002759m.g Citrus clementina HOM05D003443 ORTHO05D008640 1.0e-28 130.6 146 52.1
Cpa.g.sc70.11 Carica papaya HOM05D003443 ORTHO05D008640 1.4e-28 130.2 141 50.4
Sc01g0001350 Simmondsia chinensis HOM05D003443 ORTHO05D008640 1.4e-28 130.2 147 46.9
GSVIVG01008902001 Vitis vinifera HOM05D003443 ORTHO05D008640 1.4e-28 130.2 137 55.5
MD15G1353300 Malus domestica HOM05D003443 ORTHO05D008640 4.0e-28 128.6 136 51.5
PGSC0003DMG400000906 Solanum tuberosum HOM05D003443 ORTHO05D008640 4.0e-28 128.6 136 55.1
MD03G1200300 Malus domestica HOM05D003443 ORTHO05D008640 5.2e-28 128.3 136 51.5
PSO170G0931 Papaver somniferum HOM05D003443 ORTHO05D008640 5.2e-28 128.3 139 54.0
DCAR_014106 Daucus carota HOM05D003443 ORTHO05D008640 6.8e-28 127.9 150 50.0
Manes.18G075200 Manihot esculenta HOM05D003443 ORTHO05D008640 6.8e-28 127.9 136 51.5
Actinidia23064 Actinidia chinensis HOM05D003443 ORTHO05D008640 1.2e-27 127.1 155 48.4
Solyc11g013020.2 Solanum lycopersicum HOM05D003443 ORTHO05D008640 1.2e-27 127.1 136 54.4
Psat2g087720 Pisum sativum HOM05D003443 ORTHO05D008640 1.5e-27 126.7 132 53.8
Nitab4.5_0002883g0010 Nicotiana tabacum HOM05D003443 ORTHO05D008640 2.0e-27 126.3 136 53.7
Sopen11g007760 Solanum pennellii HOM05D003443 ORTHO05D008640 2.0e-27 126.3 136 54.4
Nn4g26023 Nelumbo nucifera HOM05D003443 ORTHO05D008640 2.6e-27 125.9 136 52.9
Nitab4.5_0001926g0050 Nicotiana tabacum HOM05D003443 ORTHO05D008640 3.4e-27 125.6 136 52.9
Prupe.1G501600 Prunus persica HOM05D003443 ORTHO05D008640 3.4e-27 125.6 136 54.4
Atru.chr13.1408 Acer truncatum HOM05D003443 ORTHO05D008640 4.4e-27 125.2 136 52.2
FvH4_2g26530 Fragaria vesca HOM05D003443 ORTHO05D008640 4.4e-27 125.2 136 50.0
RcHm_v2.0_Chr6g0295401 Rosa chinensis HOM05D003443 ORTHO05D008640 4.4e-27 125.2 136 50.7
Sabra02G0067600 Salix brachista HOM05D003443 ORTHO05D008640 4.4e-27 125.2 136 50.7
THA.LOC104817138 Tarenaya hassleriana HOM05D003443 ORTHO05D008640 4.4e-27 125.2 136 51.5
AL6G41970 Arabidopsis lyrata HOM05D003443 ORTHO05D008640 5.8e-27 124.8 136 47.8
CiPaw.05G224500 Carya illinoinensis HOM05D003443 ORTHO05D008640 5.8e-27 124.8 136 52.2
Glyma.14G162600 Glycine max HOM05D003443 ORTHO05D008640 7.5e-27 124.4 151 45.0
FAN24G2127 Fragaria x ananassa HOM05D003443 ORTHO05D008640 9.8e-27 124.0 136 49.3
CSS0034050 Camellia sinensis var. sinensis HOM05D003443 ORTHO05D008640 2.2e-26 122.9 141 49.6
Peaxi162Scf00395g00717 Petunia axillaris HOM05D003443 ORTHO05D008640 2.2e-26 122.9 136 49.3
AT4G08240 Arabidopsis thaliana HOM05D003443 ORTHO05D008640 2.9e-26 122.5 136 47.1
Gohir.A05G233400 Gossypium hirsutum HOM05D003443 ORTHO05D008640 4.9e-26 121.7 136 49.3
Lalb_Chr10g0101911 Lupinus albus HOM05D003443 ORTHO05D008640 4.9e-26 121.7 135 48.9
Gorai.009G244100 Gossypium raimondii HOM05D003443 ORTHO05D008640 6.4e-26 121.3 136 49.3
Peaxi162Scf00198g00098 Petunia axillaris HOM05D003443 ORTHO05D008640 6.4e-26 121.3 136 49.3
FAN15G0021 Fragaria x ananassa HOM05D003443 ORTHO05D008640 1.1e-25 120.6 136 48.5
FAN27G2419 Fragaria x ananassa HOM05D003443 ORTHO05D008640 1.1e-25 120.6 136 49.3
Potri.002G086200 Populus trichocarpa HOM05D003443 ORTHO05D008640 1.4e-25 120.2 136 50.7
CARHR259340 Cardamine hirsuta HOM05D003443 ORTHO05D008640 1.9e-25 119.8 136 47.1
Gohir.D05G235800 Gossypium hirsutum HOM05D003443 ORTHO05D008640 1.9e-25 119.8 136 48.5
Thhalv10029053m.g Eutrema salsugineum HOM05D003443 ORTHO05D008640 3.2e-25 119.0 133 48.1
BcaB01g02870 Brassica carinata HOM05D003443 ORTHO05D008640 4.1e-25 118.6 136 47.1
VMungo0647G0179 Vigna mungo HOM05D003443 ORTHO05D008640 4.1e-25 118.6 151 47.7
A03p27990 Brassica napus HOM05D003443 ORTHO05D008640 9.2e-25 117.5 136 45.6
Actinidia02607 Actinidia chinensis HOM05D003443 ORTHO05D008640 1.2e-24 117.1 143 50.3
BraA03t12014Z Brassica rapa HOM05D003443 ORTHO05D008640 1.2e-24 117.1 136 45.6
CAN.G513.1 Capsicum annuum HOM05D003443 ORTHO05D008640 1.2e-24 117.1 136 50.0
Cc10_g11000 Coffea canephora HOM05D003443 ORTHO05D008640 1.2e-24 117.1 136 50.7
Rhsim06G0105400 Rhododendron simsii HOM05D003443 ORTHO05D008640 2.7e-24 115.9 154 47.4
BcaC01g04776 Brassica carinata HOM05D003443 ORTHO05D008640 4.6e-24 115.2 130 46.9
C03p33840 Brassica napus HOM05D003443 ORTHO05D008640 4.6e-24 115.2 130 46.9
BolC3t15700H Brassica oleracea HOM05D003443 ORTHO05D008640 4.6e-24 115.2 130 46.9
arahy.Tifrunner.gnm1.ann1.ZIXY5S Arachis hypogaea HOM05D003443 ORTHO05D008640 6.0e-24 114.8 138 50.0
vmacro12548 Vaccinium macrocarpon HOM05D003443 ORTHO05D008640 6.0e-24 114.8 155 44.5
Aa31LG9G14320 Aethionema arabicum HOM05D003443 ORTHO05D008640 1.7e-23 113.2 130 48.5
Sp6g09810 Schrenkiella parvula HOM05D003443 ORTHO05D008640 2.3e-23 112.8 136 45.6
HPP92_002301 Vanilla planifolia HOM05D003443 ORTHO05D008640 2.3e-23 112.8 131 50.4
Hma1.2p1_0073F.1_g038390 Hydrangea macrophylla HOM05D003443 ORTHO05D008640 3.9e-23 112.1 134 48.5
arahy.Tifrunner.gnm1.ann1.B00VWE Arachis hypogaea HOM05D003443 ORTHO05D008640 5.0e-23 111.7 138 49.3
SalBow7G4791 Salvia bowleyana HOM05D003443 ORTHO05D008640 6.6e-23 111.3 137 45.3
Carub.0006s2677 Capsella rubella HOM05D003443 ORTHO05D008640 8.6e-23 110.9 136 42.6
SalBow7G2413 Salvia bowleyana HOM05D003443 ORTHO05D008640 8.6e-23 110.9 137 45.3
SGA_v2.0_scaffold52G18981 Striga asiatica HOM05D003443 ORTHO05D008640 8.6e-23 110.9 134 46.3
CANSAT25G1680 Cannabis sativa HOM05D003443 ORTHO05D008640 1.1e-22 110.5 140 48.6
Migut.C01148 Erythranthe guttata HOM05D003443 ORTHO05D008640 1.5e-22 110.2 139 46.0
Lj1g0013808 Lotus japonicus HOM05D003443 ORTHO05D008640 1.5e-22 110.2 147 44.2
MBI15_g35999_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D008640 4.3e-22 108.6 137 48.9
MBI06_g44272_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D008640 5.6e-22 108.2 137 48.9
TPR.G8499 Trifolium pratense HOM05D028375 ORTHO05D008640 4.7e-21 105.1 134 47.8
Aqoxy6G00163 Aquilegia oxysepala HOM05D003443 ORTHO05D008640 1.1e-20 104.0 125 44.8
MSTRG.1460 Avicennia marina HOM05D003443 ORTHO05D008640 1.4e-20 103.6 136 44.1
Hund27039 Selenicereus undatus HOM05D003443 ORTHO05D008640 2.0e-19 99.8 222 34.2
ECA232G0443 Erigeron canadensis HOM05D003443 ORTHO05D008640 4.4e-19 98.6 144 41.7
HanXRQChr09g0254131 Helianthus annuus HOM05D003443 ORTHO05D008640 7.5e-19 97.8 136 43.4
Zm00001eb244530 Zea mays HOM05D003443 ORTHO05D008640 1.3e-18 97.1 137 42.3
AUR62023639 Chenopodium quinoa HOM05D003443 ORTHO05D008640 2.2e-18 96.3 136 41.2
Lsat_1_v5_gn_4_136221 Lactuca sativa HOM05D003443 ORTHO05D008640 2.2e-18 96.3 140 42.9
CDE08G0113 Ceratophyllum demersum HOM05D003443 ORTHO05D008640 3.7e-18 95.5 118 45.8
MD08G1167900 Malus domestica HOM05D003443 ORTHO05D008640 3.7e-18 95.5 145 42.1
PGR044G0044 Punica granatum HOM05D003443 ORTHO05D008640 4.9e-18 95.1 133 45.1
CDE06G0537 Ceratophyllum demersum HOM05D003443 ORTHO05D008640 1.4e-17 93.6 118 46.6
ATR0121G005 Amborella trichopoda HOM05D003443 ORTHO05D008640 7.1e-17 91.3 130 40.8
Oeu047933.1 Olea europaea HOM05D003443 ORTHO05D008640 9.2e-17 90.9 155 40.6
Os02g0567000 Oryza sativa ssp. japonica HOM05D003443 ORTHO05D008640 9.2e-17 90.9 148 40.5
unitig_747.g21488 Utricularia gibba HOM05D003443 ORTHO05D008640 3.0e-15 85.9 133 37.6
Ah.16g110170 Amaranthus hybridus HOM05D003443 ORTHO05D008640 1.5e-14 83.6 87 49.4
TAR628G1666 Trochodendron aralioides HOM05D003443 ORTHO05D008640 3.3e-14 82.4 75 53.3
Eucgr.L01689 Eucalyptus grandis HOM05D003443 ORTHO05D008640 7.3e-14 81.3 69 55.1
SEGI_04119 Sequoiadendron giganteum HOM05D003443 ORTHO05D008640 1.2e-13 80.5 124 38.7
Phvul.008G165400 Phaseolus vulgaris HOM05D003443 ORTHO05D008640 2.8e-13 79.3 151 38.4
Duzib093G0610 Durio zibethinus HOM05D003443 ORTHO05D008640 4.0e-12 75.5 151 37.1
TWI12G0841 Tripterygium wilfordii HOM05D003443 ORTHO05D008640 2.0e-11 73.2 72 50.0
Migut.G00969 Erythranthe guttata HOM05D003443 ORTHO05D008640 4.1e-09 65.5 136 37.5
Cfa009666 Carpinus fangiana HOM05D003443 ORTHO05D008640 6.0e-08 61.6 74 47.3


User provided reference genes

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