Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G003570 Cucumis sativus L. HOM05D006768 ORTHO05D008436 6.8e-81 303.9 150 100.0
ClCG08G005390 Citrullus lanatus HOM05D006768 ORTHO05D008436 1.2e-48 196.8 96 99.0
MELO3C011580.2 Cucumis melo HOM05D006768 ORTHO05D008436 1.5e-48 196.4 96 97.9
Sed0001868 Sechium edule HOM05D006768 ORTHO05D008436 7.1e-46 187.6 96 94.8
Manes.02G160800 Manihot esculenta HOM05D006768 ORTHO05D008436 3.6e-42 175.3 96 88.5
Manes.18G074850 Manihot esculenta HOM05D006768 ORTHO05D008436 3.6e-42 175.3 96 88.5
Potri.005G174700 Populus trichocarpa HOM05D006768 ORTHO05D008436 9.0e-41 170.6 96 86.5
Solyc11g013100.2 Solanum lycopersicum HOM05D006768 ORTHO05D008436 9.0e-41 170.6 96 82.3
Sopen11g008160 Solanum pennellii HOM05D006768 ORTHO05D008436 9.0e-41 170.6 96 82.3
Nitab4.5_0010364g0020 Nicotiana tabacum HOM05D006768 ORTHO05D008436 2.0e-40 169.5 96 83.3
Potri.002G086600 Populus trichocarpa HOM05D006768 ORTHO05D008436 3.4e-40 168.7 96 84.4
SalBow7G0914 Salvia bowleyana HOM05D006768 ORTHO05D008436 4.5e-40 168.3 96 80.2
SalBow7G4665 Salvia bowleyana HOM05D006768 ORTHO05D008436 4.5e-40 168.3 96 80.2
Nitab4.5_0005357g0030 Nicotiana tabacum HOM05D006768 ORTHO05D008436 5.8e-40 167.9 96 82.3
Hma1.2p1_0009F.1_g006320 Hydrangea macrophylla HOM05D006768 ORTHO05D008436 3.8e-39 165.2 98 82.7
vmacro00812 Vaccinium macrocarpon HOM05D006768 ORTHO05D008436 4.9e-39 164.9 105 78.1
COL.COLO4_38328 Corchorus olitorius HOM05D006768 ORTHO05D008436 8.4e-39 164.1 98 82.7
Cc10_g11060 Coffea canephora HOM05D006768 ORTHO05D008436 2.4e-38 162.5 107 75.7
Duzib116G0009 Durio zibethinus HOM05D006768 ORTHO05D008436 4.2e-38 161.8 96 83.3
CAN.G342.8 Capsicum annuum HOM05D006768 ORTHO05D008436 5.4e-38 161.4 96 81.2
Gohir.A05G233000 Gossypium hirsutum HOM05D006768 ORTHO05D008436 5.4e-38 161.4 97 81.4
Thecc.08G120600 Theobroma cacao HOM05D006768 ORTHO05D008436 7.1e-38 161.0 97 81.4
Gohir.D05G235400 Gossypium hirsutum HOM05D006768 ORTHO05D008436 1.6e-37 159.8 97 80.4
Dinv27347 Davidia involucrata HOM05D006768 ORTHO05D008436 2.1e-37 159.5 97 80.4
Gohir.D02G081200 Gossypium hirsutum HOM05D006768 ORTHO05D008436 2.1e-37 159.5 97 81.4
Aqoxy6G00156 Aquilegia oxysepala HOM05D006768 ORTHO05D008436 4.6e-37 158.3 95 80.0
CAN.G2.37 Capsicum annuum HOM05D006768 ORTHO05D008436 1.0e-36 157.1 96 79.2
CSS0001196 Camellia sinensis var. sinensis HOM05D006768 ORTHO05D008436 1.3e-36 156.8 97 81.4
Cpa.g.sc36.24 Carica papaya HOM05D006768 ORTHO05D008436 1.3e-36 156.8 98 78.6
PGR044G1209 Punica granatum HOM05D006768 ORTHO05D008436 1.8e-36 156.4 96 79.2
MSTRG.25394 Avicennia marina HOM05D006768 ORTHO05D008436 2.3e-36 156.0 96 80.2
PGSC0003DMG400014092 Solanum tuberosum HOM05D006768 ORTHO05D008436 2.3e-36 156.0 96 76.0
CSS0006116 Camellia sinensis var. sinensis HOM05D006768 ORTHO05D008436 3.0e-36 155.6 96 76.0
Duzib041G0323 Durio zibethinus HOM05D006768 ORTHO05D008436 3.9e-36 155.2 97 79.4
RhsimUnG0095400 Rhododendron simsii HOM05D006768 ORTHO05D008436 6.7e-36 154.5 95 80.0
GSVIVG01008909001 Vitis vinifera HOM05D006768 ORTHO05D008436 1.5e-35 153.3 94 78.7
CiPaw.06G026900 Carya illinoinensis HOM05D006768 ORTHO05D008436 4.3e-35 151.8 102 77.5
Gorai.005G090800 Gossypium raimondii HOM05D006768 ORTHO05D008436 5.6e-35 151.4 97 77.3
Migut.C01157 Erythranthe guttata HOM05D006768 ORTHO05D008436 1.3e-34 150.2 97 78.4
TAR625G0411 Trochodendron aralioides HOM05D006768 ORTHO05D008436 1.6e-34 149.8 95 76.8
Sabra02G0068000 Salix brachista HOM05D006768 ORTHO05D008436 2.1e-34 149.4 90 81.1
arahy.Tifrunner.gnm1.ann1.BFT67J Arachis hypogaea HOM05D006768 ORTHO05D008436 4.8e-34 148.3 106 71.7
arahy.Tifrunner.gnm1.ann1.V4QE5E Arachis hypogaea HOM05D006768 ORTHO05D008436 4.8e-34 148.3 106 71.7
Sabra05G0131800 Salix brachista HOM05D006768 ORTHO05D008436 8.1e-34 147.5 85 83.5
Atru.chr13.1393 Acer truncatum HOM05D006768 ORTHO05D008436 1.4e-33 146.7 105 74.3
Gohir.A02G074000 Gossypium hirsutum HOM05D006768 ORTHO05D008436 1.4e-33 146.7 97 77.3
EL10Ac1g00013 Beta vulgaris HOM05D006768 ORTHO05D008436 1.8e-33 146.4 101 73.3
FvH4_2g26460 Fragaria vesca HOM05D006768 ORTHO05D008436 1.8e-33 146.4 96 77.1
FAN15G1404 Fragaria x ananassa HOM05D006768 ORTHO05D008436 1.8e-33 146.4 96 77.1
RcHm_v2.0_Chr6g0295131 Rosa chinensis HOM05D006768 ORTHO05D008436 1.8e-33 146.4 96 77.1
TWI56G0584 Tripterygium wilfordii HOM05D006768 ORTHO05D008436 2.4e-33 146.0 99 75.8
TAR376G1039 Trochodendron aralioides HOM05D000018 ORTHO05D001920 3.1e-33 145.6 85 81.2
FAN24G3387 Fragaria x ananassa HOM05D006768 ORTHO05D008436 9.0e-33 144.1 96 76.0
Gorai.009G243700 Gossypium raimondii HOM05D006768 ORTHO05D008436 1.2e-32 143.7 92 76.1
Lsat_1_v5_gn_4_25061 Lactuca sativa HOM05D006768 ORTHO05D008436 2.0e-32 142.9 95 74.7
Prupe.1G502600 Prunus persica HOM05D006768 ORTHO05D008436 2.0e-32 142.9 96 76.0
MD08G1168400 Malus domestica HOM05D006768 ORTHO05D008436 5.8e-32 141.4 94 77.7
Hma1.2p1_0073F.1_g038410 Hydrangea macrophylla HOM05D006768 ORTHO05D008436 9.9e-32 140.6 95 72.6
HanXRQChr08g0223691 Helianthus annuus HOM05D006768 ORTHO05D008436 1.7e-31 139.8 96 72.9
AUR62004718 Chenopodium quinoa HOM05D006768 ORTHO05D008436 3.8e-31 138.7 102 71.6
unitig_21.g20584 Utricularia gibba HOM05D006768 ORTHO05D008436 4.9e-31 138.3 95 68.4
Ciclev10002911m.g Citrus clementina HOM05D006768 ORTHO05D008436 8.4e-31 137.5 102 70.6
Medtr5g059100 Medicago truncatula HOM05D006768 ORTHO05D008436 2.4e-30 136.0 106 71.7
Eucgr.F04346 Eucalyptus grandis HOM05D006768 ORTHO05D008436 9.3e-30 134.0 91 75.8
Haze_00489 Corylus avellana HOM05D006768 ORTHO05D008436 2.7e-29 132.5 78 84.6
ECA234G1078 Erigeron canadensis HOM05D006768 ORTHO05D008436 1.0e-28 130.6 97 68.0
CANSAT25G0473 Cannabis sativa HOM05D006768 ORTHO05D008436 1.3e-28 130.2 106 66.0
MBI06_g02573_MAGBIO Magnolia biondii HOM05D006768 ORTHO05D008436 1.3e-28 130.2 126 58.7
Psat2g079320 Pisum sativum HOM05D006768 ORTHO05D008436 1.3e-28 130.2 102 71.6
QL09p036660 Quercus lobata HOM05D006768 ORTHO05D008436 3.0e-28 129.0 100 68.0
ECA233G5727 Erigeron canadensis HOM05D006768 ORTHO05D008436 3.9e-28 128.6 95 67.4
Lalb_Chr04g0253331 Lupinus albus HOM05D006768 ORTHO05D008436 5.1e-28 128.3 107 65.4
HanXRQChr16g0527071 Helianthus annuus HOM05D006768 ORTHO05D008436 1.9e-27 126.3 95 67.4
BcaB01g02871 Brassica carinata HOM05D006768 ORTHO05D008436 2.5e-27 125.9 99 65.7
TWI12G0503 Tripterygium wilfordii HOM05D006768 ORTHO05D008436 2.5e-27 125.9 100 69.0
PSO170G4432 Papaver somniferum HOM05D006768 ORTHO05D008436 4.3e-27 125.2 97 68.0
PSO528G0064 Papaver somniferum HOM05D006768 ORTHO05D008436 4.3e-27 125.2 97 68.0
Hund27041 Selenicereus undatus HOM05D006768 ORTHO05D008436 7.4e-27 124.4 103 65.0
TPR.G8510 Trifolium pratense HOM05D006768 ORTHO05D008436 7.4e-27 124.4 103 65.0
Thhalv10029535m.g Eutrema salsugineum HOM05D006768 ORTHO05D008436 9.6e-27 124.0 99 63.6
THA.LOC104817125 Tarenaya hassleriana HOM05D006768 ORTHO05D008436 9.6e-27 124.0 103 66.0
FAN20G0213 Fragaria x ananassa HOM05D000048 ORTHO05D004674 3.7e-26 122.1 89 70.8
Glyma.13G082200 Glycine max HOM05D006768 ORTHO05D008436 4.8e-26 121.7 105 64.8
Glyma.14G163200 Glycine max HOM05D006768 ORTHO05D008436 1.1e-25 120.6 107 65.4
Lj1g0025240 Lotus japonicus HOM05D006768 ORTHO05D008436 1.1e-25 120.6 110 61.8
Phvul.008G165800 Phaseolus vulgaris HOM05D006768 ORTHO05D008436 1.1e-25 120.6 110 62.7
VMungo0647G1658 Vigna mungo HOM05D006768 ORTHO05D008436 1.1e-25 120.6 109 62.4
Sc23g0000800 Simmondsia chinensis HOM05D006768 ORTHO05D008436 1.4e-25 120.2 83 73.5
SGA_v2.0_scaffold24G10479 Striga asiatica HOM05D006768 ORTHO05D008436 1.8e-25 119.8 95 63.2
Sp6g09840 Schrenkiella parvula HOM05D006768 ORTHO05D008436 4.0e-25 118.6 110 62.7
BcaC01g04777 Brassica carinata HOM05D006768 ORTHO05D008436 5.3e-25 118.2 108 63.0
A03p28000 Brassica napus HOM05D006768 ORTHO05D008436 5.3e-25 118.2 108 63.0
C03p33820 Brassica napus HOM05D006768 ORTHO05D008436 5.3e-25 118.2 108 63.0
BolC3t15699H Brassica oleracea HOM05D006768 ORTHO05D008436 5.3e-25 118.2 108 63.0
BraA03t12013Z Brassica rapa HOM05D006768 ORTHO05D008436 6.9e-25 117.9 109 62.4
CARHR259330 Cardamine hirsuta HOM05D006768 ORTHO05D008436 2.0e-24 116.3 105 60.0
Peaxi162Scf00000g61010 Petunia axillaris HOM05D006768 ORTHO05D008436 2.0e-24 116.3 64 85.9
CSS0018251 Camellia sinensis var. sinensis HOM05D006768 ORTHO05D008436 3.4e-24 115.5 80 75.0
CDE04G1345 Ceratophyllum demersum HOM05D006768 ORTHO05D008436 1.4e-22 110.2 95 55.8
CDE08G1444 Ceratophyllum demersum HOM05D006768 ORTHO05D008436 4.2e-22 108.6 100 59.0
FAN27G1871 Fragaria x ananassa HOM05D000048 ORTHO05D004674 1.6e-21 106.7 78 71.8
HPP92_011177 Vanilla planifolia HOM05D006768 ORTHO05D008436 2.7e-21 105.9 96 61.5
Zm00001eb398080 Zea mays HOM05D006768 ORTHO05D008436 1.8e-20 103.2 108 53.7
AL6G41870 Arabidopsis lyrata HOM05D006768 ORTHO05D008436 2.3e-20 102.8 106 55.7
AT4G08230 Arabidopsis thaliana HOM05D006768 ORTHO05D008436 3.9e-20 102.1 109 56.0
Carub.0006s2676 Capsella rubella HOM05D006768 ORTHO05D008436 5.1e-20 101.7 108 54.6
THA.LOC104806813 Tarenaya hassleriana HOM05D006768 ORTHO05D008436 5.1e-20 101.7 103 55.3
Os03g0263700 Oryza sativa ssp. japonica HOM05D006768 ORTHO05D008436 1.1e-19 100.5 104 56.7
Zm00001eb011610 Zea mays HOM05D006768 ORTHO05D008436 9.7e-19 97.4 107 53.3
SEGI_37020 Sequoiadendron giganteum HOM05D006768 ORTHO05D008436 4.8e-18 95.1 97 53.6
Sabra05G0131600 Salix brachista HOM05D006768 ORTHO05D008436 1.5e-16 90.1 57 78.9
AUR62023633 Chenopodium quinoa HOM05D006768 ORTHO05D008436 7.6e-16 87.8 70 70.0
Ca_28007_v3 Cicer arietinum L. HOM05D006768 ORTHO05D008436 7.6e-16 87.8 82 62.2
Nitab4.5_0001142g0120 Nicotiana tabacum HOM05D006768 ORTHO05D008436 2.2e-15 86.3 88 53.4
Aa31LG9G14330 Aethionema arabicum HOM05D006768 ORTHO05D008436 6.1e-13 78.2 83 55.4
Nn1g08704 Nelumbo nucifera HOM05D006768 ORTHO05D008436 2.5e-11 72.8 50 70.0
Pp3c13_12030 Physcomitrium patens HOM05D006768 ORTHO05D008436 8.2e-10 67.8 98 43.9
Mapoly0043s0020 Marchantia polymorpha HOM05D006768 ORTHO05D008436 6.9e-09 64.7 112 42.0
AagrBONN_evm.TU.Sc2ySwM_344.1603 Anthoceros agrestis HOM05D006768 ORTHO05D008436 2.6e-08 62.8 104 42.3
DCAR_014111 Daucus carota HOM05D006768 ORTHO05D008436 1.7e-07 60.1 55 60.0


User provided reference genes

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