Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G003370 Cucumis sativus L. HOM05D006863 ORTHO05D009101 2.5e-195 685.3 342 100.0
ClCG08G005160 Citrullus lanatus HOM05D006863 ORTHO05D009101 2.9e-172 608.6 342 88.3
Sed0022103 Sechium edule HOM05D006863 ORTHO05D009101 2.9e-159 565.5 342 83.0
Ciclev10031676m.g Citrus clementina HOM05D006863 ORTHO05D009101 2.1e-122 443.0 345 65.2
TPR.G38252 Trifolium pratense HOM05D006863 ORTHO05D009101 4.8e-122 441.8 335 64.2
Manes.14G100000 Manihot esculenta HOM05D006863 ORTHO05D009101 4.0e-121 438.7 352 64.2
Dinv04484 Davidia involucrata HOM05D006863 ORTHO05D009101 6.9e-121 438.0 355 62.8
Gohir.1Z049378 Gossypium hirsutum HOM05D006863 ORTHO05D009101 1.5e-120 436.8 343 63.6
Gohir.A13G053600 Gossypium hirsutum HOM05D006863 ORTHO05D009101 1.5e-120 436.8 343 63.6
Gorai.013G081400 Gossypium raimondii HOM05D006863 ORTHO05D009101 2.6e-120 436.0 343 63.6
Gohir.D13G071100 Gossypium hirsutum HOM05D006863 ORTHO05D009101 1.7e-119 433.3 343 63.3
Medtr5g054910 Medicago truncatula HOM05D006863 ORTHO05D009101 2.9e-119 432.6 296 69.3
RcHm_v2.0_Chr4g0435511 Rosa chinensis HOM05D006863 ORTHO05D009101 3.8e-119 432.2 276 75.4
Potri.010G127200 Populus trichocarpa HOM05D006863 ORTHO05D009101 4.9e-119 431.8 296 70.9
Prupe.1G308400 Prunus persica HOM05D006863 ORTHO05D009101 1.9e-118 429.9 341 66.0
CSS0023691 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 1.6e-117 426.8 277 70.8
CANSAT56G0117 Cannabis sativa HOM05D006863 ORTHO05D009101 2.1e-117 426.4 282 73.4
Thecc.02G357800 Theobroma cacao HOM05D006863 ORTHO05D009101 2.7e-117 426.0 344 63.1
TAR371G0467 Trochodendron aralioides HOM05D006863 ORTHO05D009101 3.5e-117 425.6 278 71.6
HanXRQChr17g0552211 Helianthus annuus HOM05D006863 ORTHO05D009101 4.6e-117 425.2 339 63.1
MD13G1044100 Malus domestica HOM05D006863 ORTHO05D009101 2.3e-116 422.9 310 68.7
Sabra10G0096600 Salix brachista HOM05D006863 ORTHO05D009101 3.0e-116 422.5 309 68.0
QL01p043996 Quercus lobata HOM05D006863 ORTHO05D009101 8.7e-116 421.0 255 77.3
Lj3C1017T9 Lonicera japonica HOM05D006863 ORTHO05D009101 1.5e-115 420.2 276 72.8
GSVIVG01011920001 Vitis vinifera HOM05D006863 ORTHO05D009101 1.5e-115 420.2 258 74.8
Atru.chr11.1297 Acer truncatum HOM05D006863 ORTHO05D009101 7.4e-115 417.9 338 61.8
Eucgr.G02336 Eucalyptus grandis HOM05D006863 ORTHO05D009101 1.3e-114 417.2 293 68.6
Lj2g0005111 Lotus japonicus HOM05D006863 ORTHO05D009101 3.7e-114 415.6 308 65.6
Thhalv10004539m.g Eutrema salsugineum HOM05D006863 ORTHO05D009101 1.1e-113 414.1 273 71.4
Phvul.002G082500 Phaseolus vulgaris HOM05D006863 ORTHO05D009101 1.1e-113 414.1 336 60.7
Lalb_Chr17g0342021 Lupinus albus HOM05D006863 ORTHO05D009101 3.1e-113 412.5 342 60.8
ECA246G5009 Erigeron canadensis HOM05D006863 ORTHO05D009101 5.3e-113 411.8 256 74.6
Rhsim09G0110000 Rhododendron simsii HOM05D006863 ORTHO05D009101 1.5e-112 410.2 317 64.0
Sp2g15050 Schrenkiella parvula HOM05D006863 ORTHO05D009101 2.0e-112 409.8 273 71.8
VMungo1215G1485 Vigna mungo HOM05D006863 ORTHO05D009101 2.0e-112 409.8 333 59.8
arahy.Tifrunner.gnm1.ann1.2EV214 Arachis hypogaea HOM05D006863 ORTHO05D009101 2.6e-112 409.5 333 61.6
PGR119G0754 Punica granatum HOM05D006863 ORTHO05D009101 2.6e-112 409.5 277 71.5
arahy.Tifrunner.gnm1.ann1.S0U20I Arachis hypogaea HOM05D006863 ORTHO05D009101 4.5e-112 408.7 333 61.9
Duzib251G0889 Durio zibethinus HOM05D006863 ORTHO05D009101 5.8e-112 408.3 343 59.5
Glyma.08G260300 Glycine max HOM05D006863 ORTHO05D009101 1.7e-111 406.8 343 60.3
SalBow8G2780 Salvia bowleyana HOM05D006863 ORTHO05D009101 2.2e-111 406.4 296 65.5
BraA09t38093Z Brassica rapa HOM05D006863 ORTHO05D005487 4.9e-111 405.2 256 73.8
AL5G14420 Arabidopsis lyrata HOM05D006863 ORTHO05D009101 8.4e-111 404.4 298 65.4
Carub.0005s0363 Capsella rubella HOM05D006863 ORTHO05D009101 8.4e-111 404.4 298 66.8
A09p25060 Brassica napus HOM05D006863 ORTHO05D005487 1.9e-110 403.3 256 73.8
FAN12G1275 Fragaria x ananassa HOM05D006863 ORTHO05D009101 2.4e-110 402.9 308 66.9
AT3G25805 Arabidopsis thaliana HOM05D006863 ORTHO05D009101 3.2e-110 402.5 273 69.2
Lsat_1_v5_gn_3_59660 Lactuca sativa HOM05D006863 ORTHO05D009101 3.2e-110 402.5 277 69.3
Nitab4.5_0000280g0240 Nicotiana tabacum HOM05D006863 ORTHO05D009101 3.2e-110 402.5 256 70.3
PGSC0003DMG401015876 Solanum tuberosum HOM05D006863 ORTHO05D009101 3.2e-110 402.5 256 70.7
BcaC04g21415 Brassica carinata HOM05D006863 ORTHO05D005487 5.5e-110 401.7 255 73.7
C09p32050 Brassica napus HOM05D006863 ORTHO05D009101 5.5e-110 401.7 255 73.7
BolC9t56057H Brassica oleracea HOM05D006863 ORTHO05D005487 5.5e-110 401.7 255 73.7
Migut.L01080 Erythranthe guttata HOM05D006863 ORTHO05D009101 5.5e-110 401.7 348 60.1
Nitab4.5_0009260g0040 Nicotiana tabacum HOM05D006863 ORTHO05D009101 2.1e-109 399.8 305 62.3
vmacro10546 Vaccinium macrocarpon HOM05D006863 ORTHO05D009101 2.1e-109 399.8 383 55.1
Cpa.g.sc1.191 Carica papaya HOM05D006863 ORTHO05D009101 4.6e-109 398.7 276 69.6
Sopen04g002190 Solanum pennellii HOM05D006863 ORTHO05D009101 1.0e-108 397.5 256 70.3
Solyc04g007110.4 Solanum lycopersicum HOM05D006863 ORTHO05D009101 6.7e-108 394.8 257 70.4
Aa31LG2G6540 Aethionema arabicum HOM05D006863 ORTHO05D009101 1.5e-107 393.7 283 66.1
Cc11_g10350 Coffea canephora HOM05D006863 ORTHO05D009101 3.3e-107 392.5 293 63.8
THA.LOC104825705 Tarenaya hassleriana HOM05D006863 ORTHO05D009101 2.8e-106 389.4 273 66.7
MBI12_g32420_MAGBIO Magnolia biondii HOM05D006863 ORTHO05D009101 8.2e-106 387.9 254 69.3
arahy.Tifrunner.gnm1.ann1.PE9U7E Arachis hypogaea HOM05D006863 ORTHO05D009101 1.8e-105 386.7 367 55.3
Peaxi162Scf00086g00919 Petunia axillaris HOM05D006863 ORTHO05D009101 2.0e-104 383.3 326 57.1
CiPaw.15G005400 Carya illinoinensis HOM05D006863 ORTHO05D009101 4.9e-103 378.6 225 76.4
MSTRG.824 Avicennia marina HOM05D006863 ORTHO05D009101 6.5e-103 378.3 256 66.8
Aqoxy3G00331 Aquilegia oxysepala HOM05D006863 ORTHO05D009101 1.1e-102 377.5 251 70.1
PSO210G1549 Papaver somniferum HOM05D006863 ORTHO05D009101 1.4e-102 377.1 251 68.1
PSO447G0382 Papaver somniferum HOM05D006863 ORTHO05D009101 1.4e-102 377.1 252 67.5
Actinidia14870 Actinidia chinensis HOM05D006863 ORTHO05D009101 9.3e-102 374.4 299 63.5
AUR62035252 Chenopodium quinoa HOM05D006863 ORTHO05D009101 1.2e-101 374.0 307 60.6
EL10Ac6g14444 Beta vulgaris HOM05D006863 ORTHO05D009101 1.6e-101 373.6 332 56.3
FvH4_4g27661 Fragaria vesca HOM05D006863 ORTHO05D009101 1.6e-101 373.6 226 77.4
Os04g0462300 Oryza sativa ssp. japonica HOM05D006863 ORTHO05D009101 3.5e-101 372.5 248 66.9
BcaB07g30631 Brassica carinata HOM05D001825 ORTHO05D009101 4.6e-101 372.1 250 70.8
HPP92_023480 Vanilla planifolia HOM05D006863 ORTHO05D009101 1.3e-100 370.5 261 67.4
Ah.03g137770 Amaranthus hybridus HOM05D006863 ORTHO05D005487 1.9e-99 366.7 380 51.3
Nn4g23802 Nelumbo nucifera HOM05D006863 ORTHO05D009101 1.1e-97 360.9 246 67.5
SGA_v2.0_scaffold32G13125 Striga asiatica HOM05D006863 ORTHO05D009101 9.3e-94 347.8 321 53.3
MELO3C011551.2 Cucumis melo HOM05D006863 ORTHO05D009101 2.4e-89 333.2 170 97.1
Peaxi162Scf00086g00918 Petunia axillaris HOM05D006863 ORTHO05D009101 6.9e-89 331.6 256 61.3
DCAR_026725 Daucus carota HOM05D006863 ORTHO05D009101 3.4e-88 329.3 321 54.8
unitig_22.g6873 Utricularia gibba HOM05D001580 ORTHO05D009101 5.0e-87 325.5 321 53.9
ATR0141G001 Amborella trichopoda HOM05D006863 ORTHO05D009101 7.9e-85 318.2 275 55.6
Zm00001eb080610 Zea mays HOM05D006863 ORTHO05D009101 3.7e-82 309.3 306 52.3
Mapoly0073s0050 Marchantia polymorpha HOM05D006863 ORTHO05D009101 2.0e-80 303.5 288 52.8
Psat4g144720 Pisum sativum HOM05D006863 ORTHO05D009101 4.5e-80 302.4 210 66.2
TWI75G0199 Tripterygium wilfordii HOM05D006863 ORTHO05D009101 5.9e-80 302.0 184 75.5
CARHR146720 Cardamine hirsuta HOM05D006863 ORTHO05D009101 1.3e-79 300.8 198 68.2
FAN22G1855 Fragaria x ananassa HOM05D006863 ORTHO05D009101 4.7e-77 292.4 184 73.4
SEGI_08911 Sequoiadendron giganteum HOM05D006863 ORTHO05D009101 2.0e-75 287.0 231 58.0
SEGI_20209 Sequoiadendron giganteum HOM05D006863 ORTHO05D009101 2.0e-75 287.0 231 58.0
Pp3c1_42010 Physcomitrium patens HOM05D006863 ORTHO05D009101 8.2e-74 281.6 253 51.4
AUR62002895 Chenopodium quinoa HOM05D006863 ORTHO05D009101 7.0e-73 278.5 198 67.2
Haze_17458 Corylus avellana HOM05D006863 ORTHO05D009101 1.1e-70 271.2 255 54.9
Sc04g0006570 Simmondsia chinensis HOM05D006863 ORTHO05D009101 7.2e-70 268.5 177 70.6
Glyma.20G042600 Glycine max HOM05D006863 ORTHO05D009101 5.2e-68 262.3 164 69.5
SMO111G0216 Selaginella moellendorffii HOM05D006863 ORTHO05D009101 9.7e-67 258.1 242 47.9
AUR62002896 Chenopodium quinoa HOM05D006863 ORTHO05D009101 3.5e-64 249.6 187 63.1
AagrBONN_evm.TU.Sc2ySwM_117.2959 Anthoceros agrestis HOM05D006863 ORTHO05D009101 2.1e-61 240.4 224 49.6
CSS0005134 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 2.8e-58 229.9 277 44.4
CSS0013896 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 2.8e-58 229.9 277 44.4
Ca_27358_v3 Cicer arietinum L. HOM05D006863 ORTHO05D009101 3.8e-55 219.5 195 56.9
COL.COLO4_07899 Corchorus olitorius HOM05D006863 ORTHO05D009101 3.8e-55 219.5 298 42.6
Gorai.012G052200 Gossypium raimondii HOM05D006863 ORTHO05D009101 1.6e-48 197.6 131 68.7
Hund25085 Selenicereus undatus HOM05D006863 ORTHO05D009101 2.0e-48 197.2 194 54.6
Gohir.D04G047100 Gossypium hirsutum HOM05D006863 ORTHO05D009101 5.0e-47 192.6 131 67.2
Gohir.D11G195601 Gossypium hirsutum HOM05D006863 ORTHO05D009101 1.9e-41 174.1 131 65.6
SMO358G0636 Selaginella moellendorffii HOM05D006863 ORTHO05D009101 2.5e-38 163.7 242 36.4
CDE11G0826 Ceratophyllum demersum HOM05D006863 ORTHO05D009101 6.2e-29 132.5 102 58.8
MD16G1044900 Malus domestica HOM05D006863 ORTHO05D009101 2.6e-27 127.1 91 63.7
MCO04G047 Micromonas commoda HOM05D006863 ORTHO05D002945 2.6e-27 127.1 258 35.7
PRCOL_00006784 Prasinoderma coloniale HOM05D006863 ORTHO05D002945 8.3e-26 122.1 245 35.5
Cre02.g088500 Chlamydomonas reinhardtii HOM05D002745 ORTHO05D002945 6.0e-24 115.9 271 31.4
Oeu042053.1 Olea europaea HOM05D006863 ORTHO05D009101 3.6e-21 106.7 68 67.6
Sc04g0006560 Simmondsia chinensis HOM05D006863 ORTHO05D009101 6.0e-16 89.4 57 70.2
Haze_17459 Corylus avellana HOM05D006863 ORTHO05D044797 2.2e-10 70.9 107 46.7
Psat2g101840 Pisum sativum HOM05D006863 ORTHO05D044797 5.4e-09 66.2 76 46.1


User provided reference genes

Program Settings