Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G003070 Cucumis sativus L. HOM05D005651 ORTHO05D006877 0.0e+00 2227.2 1122 100.0
ClCG08G003660 Citrullus lanatus HOM05D005651 ORTHO05D006877 0.0e+00 1942.9 1122 87.3
Sed0004152 Sechium edule HOM05D005651 ORTHO05D006877 0.0e+00 1761.1 1110 79.7
MELO3C026127.2 Cucumis melo HOM05D005651 ORTHO05D006877 0.0e+00 1289.6 701 92.9
RcHm_v2.0_Chr4g0412511 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1203.0 1134 55.6
RcHm_v2.0_Chr4g0412451 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1196.4 1138 55.5
TAR362G0451 Trochodendron aralioides HOM05D005651 ORTHO05D006877 0.0e+00 1176.0 1128 55.4
FAN12G2514 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1163.3 1132 53.8
Actinidia13837 Actinidia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1160.2 1129 54.7
FvH4_4g12860 Fragaria vesca HOM05D005651 ORTHO05D006877 0.0e+00 1158.3 1121 54.1
MD04G1022200 Malus domestica HOM05D005651 ORTHO05D006877 0.0e+00 1154.0 1144 53.8
FAN07G2778 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1152.1 1128 53.8
FAN17G0433 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1151.0 1132 53.4
Prupe.1G172400 Prunus persica HOM05D005651 ORTHO05D006877 0.0e+00 1147.1 1125 54.4
Haze_11684 Corylus avellana HOM05D005651 ORTHO05D006877 0.0e+00 1114.0 1235 49.6
QL06p027298 Quercus lobata HOM05D005651 ORTHO05D006877 0.0e+00 1101.7 1123 53.3
GSVIVG01031569001 Vitis vinifera HOM05D005651 ORTHO05D006877 0.0e+00 1098.6 1130 51.9
Thecc.04G191000 Theobroma cacao HOM05D005651 ORTHO05D006877 0.0e+00 1097.8 1129 51.4
CANSAT78G1330 Cannabis sativa HOM05D005651 ORTHO05D006877 0.0e+00 1095.5 1129 52.5
Cpa.g.sc157.13 Carica papaya HOM05D005651 ORTHO05D006877 0.0e+00 1092.4 1134 51.5
COL.COLO4_35960 Corchorus olitorius HOM05D005651 ORTHO05D006877 2.3e-311 1072.4 1126 50.5
Ciclev10004169m.g Citrus clementina HOM05D005651 ORTHO05D006877 1.5e-310 1069.7 1116 51.6
Gohir.D02G018500 Gossypium hirsutum HOM05D005651 ORTHO05D006877 8.7e-306 1053.9 1132 50.0
Glyma.11G253600 Glycine max HOM05D005651 ORTHO05D006877 2.5e-305 1052.4 1132 50.1
Lj6g0020014 Lotus japonicus HOM05D005651 ORTHO05D006877 1.6e-304 1049.7 1118 50.8
Gohir.A02G016900 Gossypium hirsutum HOM05D005651 ORTHO05D006877 2.1e-304 1049.3 1133 49.8
TPR.G18109 Trifolium pratense HOM05D005651 ORTHO05D006877 3.6e-304 1048.5 1133 49.6
arahy.Tifrunner.gnm1.ann1.RD9PAU Arachis hypogaea HOM05D005651 ORTHO05D006877 1.1e-303 1047.0 1132 48.9
Potri.002G232700 Populus trichocarpa HOM05D005651 ORTHO05D006877 3.4e-302 1042.0 1106 50.8
Gorai.005G022800 Gossypium raimondii HOM05D005651 ORTHO05D006877 8.4e-301 1037.3 1133 49.5
THA.LOC104808673 Tarenaya hassleriana HOM05D005651 ORTHO05D006877 4.2e-300 1035.0 1131 48.1
VMungo1383G2894 Vigna mungo HOM05D005651 ORTHO05D006877 4.2e-300 1035.0 1123 49.5
AT4G14180 Arabidopsis thaliana HOM05D005651 ORTHO05D006877 7.1e-300 1034.2 1131 47.8
Sabra02G0177500 Salix brachista HOM05D005651 ORTHO05D006877 9.3e-300 1033.9 1099 51.0
Lj3C272T4 Lonicera japonica HOM05D005651 ORTHO05D006877 3.5e-299 1031.9 1150 49.0
Medtr3g084640 Medicago truncatula HOM05D005651 ORTHO05D006877 1.1e-297 1026.9 1122 49.1
AL7G42200 Arabidopsis lyrata HOM05D005651 ORTHO05D006877 3.7e-296 1021.9 1134 47.3
Aqoxy2G04074 Aquilegia oxysepala HOM05D005651 ORTHO05D006877 8.1e-296 1020.8 1133 49.7
Ca_16431_v3 Cicer arietinum L. HOM05D005651 ORTHO05D006877 1.1e-295 1020.4 1128 48.9
PGR083G1656 Punica granatum HOM05D005651 ORTHO05D006877 1.1e-295 1020.4 1132 48.9
arahy.Tifrunner.gnm1.ann1.4U9R65 Arachis hypogaea HOM05D005651 ORTHO05D006877 2.0e-294 1016.1 1154 48.1
Carub.0007s2821 Capsella rubella HOM05D005651 ORTHO05D006877 1.1e-292 1010.4 1136 48.2
arahy.Tifrunner.gnm1.ann1.9V91M6 Arachis hypogaea HOM05D005651 ORTHO05D006877 4.2e-292 1008.4 1118 48.7
Cc03_g09140 Coffea canephora HOM05D005651 ORTHO05D006877 2.7e-291 1005.7 1129 47.8
Phvul.001G265000 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 6.7e-290 1001.1 1125 48.4
Nn8g41263 Nelumbo nucifera HOM05D005651 ORTHO05D006877 1.5e-289 1000.0 1125 49.0
HanXRQChr14g0436391 Helianthus annuus HOM05D005651 ORTHO05D006877 9.6e-289 997.3 1118 48.1
Rhsim02G0090700 Rhododendron simsii HOM05D005651 ORTHO05D006877 9.0e-287 990.7 988 53.2
MBI11_g07399_MAGBIO Magnolia biondii HOM05D005651 ORTHO05D006877 1.2e-286 990.3 1160 47.8
Peaxi162Scf00017g02338 Petunia axillaris HOM05D005651 ORTHO05D006877 3.8e-285 985.3 1122 47.1
Sp5g13520 Schrenkiella parvula HOM05D005651 ORTHO05D006877 6.0e-283 978.0 1129 46.5
Aa31LG9G3210 Aethionema arabicum HOM05D005651 ORTHO05D006877 6.7e-282 974.5 1133 46.2
Lsat_1_v5_gn_2_47921 Lactuca sativa HOM05D005651 ORTHO05D006877 7.4e-281 971.1 1129 47.0
Sc25g0005740 Simmondsia chinensis HOM05D005651 ORTHO05D006877 3.7e-280 968.8 1122 46.4
C03p35350 Brassica napus HOM05D005651 ORTHO05D006877 1.1e-279 967.2 1127 45.6
BcaC01g04643 Brassica carinata HOM05D005651 ORTHO05D006877 3.1e-279 965.7 1128 45.5
BolC3t15845H Brassica oleracea HOM05D005651 ORTHO05D006877 3.1e-279 965.7 1128 45.5
A03p29160 Brassica napus HOM05D005651 ORTHO05D006877 5.3e-279 964.9 1129 45.4
Sopen03g033090 Solanum pennellii HOM05D005651 ORTHO05D006877 5.3e-279 964.9 1131 45.8
BcaB01g02715 Brassica carinata HOM05D005651 ORTHO05D006877 6.9e-279 964.5 1128 46.1
Migut.G00953 Erythranthe guttata HOM05D005651 ORTHO05D006877 2.9e-277 959.1 1129 46.6
PSO063G2404 Papaver somniferum HOM05D005651 ORTHO05D006877 1.9e-276 956.4 1138 47.1
arahy.Tifrunner.gnm1.ann1.EYX4BI Arachis hypogaea HOM05D005651 ORTHO05D006877 2.5e-276 956.1 1139 46.5
Duzib212G0903 Durio zibethinus HOM05D005651 ORTHO05D006877 3.2e-276 955.7 966 52.8
SGA_v2.0_scaffold12G06118 Striga asiatica HOM05D005651 ORTHO05D006877 3.3e-273 945.7 1130 45.6
Eucgr.H02630 Eucalyptus grandis HOM05D005651 ORTHO05D006877 5.3e-271 938.3 1136 46.7
Cfa008665 Carpinus fangiana HOM05D005651 ORTHO05D006877 6.9e-271 937.9 899 54.8
TWI56G0421 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 5.9e-270 934.9 988 50.1
Manes.05G198800 Manihot esculenta HOM05D005651 ORTHO05D006877 2.7e-267 926.0 950 52.6
Solyc03g114040.3 Solanum lycopersicum HOM05D005651 ORTHO05D006877 3.6e-267 925.6 1176 43.8
SalBow1G5228 Salvia bowleyana HOM05D005651 ORTHO05D006877 5.7e-265 918.3 1121 44.4
SalBow1G5941 Salvia bowleyana HOM05D005651 ORTHO05D006877 9.7e-265 917.5 1121 44.6
Thhalv10027320m.g Eutrema salsugineum HOM05D005651 ORTHO05D006877 1.8e-263 913.3 1133 44.7
Nitab4.5_0001422g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 4.2e-260 902.1 1132 43.4
Lalb_Chr24g0394531 Lupinus albus HOM05D005651 ORTHO05D006877 2.0e-254 883.2 972 50.1
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 3.8e-253 879.0 1127 42.9
PSO017G3585 Papaver somniferum HOM05D005651 ORTHO05D006877 1.8e-250 870.2 1023 47.2
CiPaw.01G113500 Carya illinoinensis HOM05D005651 ORTHO05D006877 6.8e-250 868.2 889 51.5
Nitab4.5_0009569g0040 Nicotiana tabacum HOM05D005651 ORTHO05D006877 1.8e-247 860.1 996 45.8
EL10Ac3g07437 Beta vulgaris HOM05D005651 ORTHO05D006877 2.4e-247 859.8 1129 43.9
CAN.G781.41 Capsicum annuum HOM05D005651 ORTHO05D006877 6.8e-242 841.6 1102 43.0
Oeu050724.1 Olea europaea HOM05D005651 ORTHO05D006877 1.6e-238 830.5 996 46.5
AUR62018536 Chenopodium quinoa HOM05D005651 ORTHO05D006877 7.2e-236 821.6 1043 44.1
AUR62020881 Chenopodium quinoa HOM05D005651 ORTHO05D006877 2.3e-234 816.6 1084 43.2
DCAR_026668 Daucus carota HOM05D005651 ORTHO05D006877 1.2e-230 804.3 1120 42.2
ECA238G0348 Erigeron canadensis HOM05D005651 ORTHO05D006877 1.9e-204 717.2 1050 40.2
Ah.04g149640 Amaranthus hybridus HOM05D005651 ORTHO05D006877 6.2e-203 712.2 992 41.2
Atru.chr3.1765 Acer truncatum HOM05D005651 ORTHO05D006877 2.0e-201 707.2 706 52.7
SHI01044 Sapria himalayana HOM05D005651 ORTHO05D006877 2.7e-198 696.8 894 45.3
Os04g0347800 Oryza sativa ssp. japonica HOM05D005651 ORTHO05D006877 2.2e-192 677.2 996 39.8
unitig_748.g8008 Utricularia gibba HOM05D005651 ORTHO05D006877 3.9e-181 639.8 1032 37.2
Dinv32168 Davidia involucrata HOM05D005651 ORTHO05D006877 4.8e-179 632.9 590 55.3
SEGI_00340 Sequoiadendron giganteum HOM05D005651 ORTHO05D006877 5.5e-175 619.4 1177 34.0
Phvul.004G062100 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 1.8e-173 614.4 756 44.3
CARHR220210 Cardamine hirsuta HOM05D005651 ORTHO05D006877 3.3e-172 610.1 668 48.4
Zm00001eb389920 Zea mays HOM05D005651 ORTHO05D006877 2.5e-164 583.9 856 37.0
Lj3C268T6 Lonicera japonica HOM05D005651 ORTHO05D006877 7.4e-164 582.4 595 50.3
Dinv32169 Davidia involucrata HOM05D005651 ORTHO05D006877 4.2e-151 540.0 466 60.7
Psat2g094320 Pisum sativum HOM05D005651 ORTHO05D006877 1.3e-147 528.5 588 48.6
CDE02G2388 Ceratophyllum demersum HOM05D005651 ORTHO05D006877 6.1e-142 509.6 652 44.6
Lj3A268T25 Lonicera japonica HOM05D005651 ORTHO05D006877 2.3e-141 507.7 493 55.2
vmacro15590 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 9.2e-114 416.0 530 44.9
Atru.chr3.1766 Acer truncatum HOM05D005651 ORTHO05D006877 4.3e-111 407.1 405 56.3
Phvul.006G051700 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 7.3e-111 406.4 469 49.7
CARHR220220 Cardamine hirsuta HOM05D005651 ORTHO05D006877 8.3e-99 366.3 492 42.1
HPP92_024561 Vanilla planifolia HOM05D005651 ORTHO05D006877 1.1e-98 365.9 465 43.7
Mapoly0195s0003 Marchantia polymorpha HOM05D005651 ORTHO05D006877 6.2e-94 350.1 1163 26.2
Pp3c15_15330 Physcomitrium patens HOM05D005651 ORTHO05D006877 5.2e-85 320.5 1173 25.7
HPP92_024560 Vanilla planifolia HOM05D005651 ORTHO05D006877 2.4e-69 268.5 379 40.1
Prupe.1G176200 Prunus persica HOM05D005651 ORTHO05D006877 6.2e-62 243.8 548 33.8
SHI01039 Sapria himalayana HOM05D005651 ORTHO05D006877 6.5e-43 180.6 173 53.8
HPP92_024556 Vanilla planifolia HOM05D005651 ORTHO05D006877 6.5e-43 180.6 226 40.3
PGSC0003DMG400024589 Solanum tuberosum HOM05D005651 ORTHO05D006877 1.4e-40 172.9 192 45.3
vmacro15591 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 3.2e-34 151.8 319 37.0
Psat2g094280 Pisum sativum HOM05D005651 ORTHO05D006877 4.2e-34 151.4 227 40.5
Psat0s1368g0040 Pisum sativum HOM05D005651 ORTHO05D006877 4.7e-33 147.9 185 42.2
Ah.04g149630 Amaranthus hybridus HOM05D005651 ORTHO05D006877 2.3e-32 145.6 146 52.1
Lalb_Chr24g0394541 Lupinus albus HOM05D005651 ORTHO05D006877 4.8e-30 137.9 146 53.4
BraA03t12111Z Brassica rapa HOM05D005651 ORTHO05D006877 9.1e-29 133.7 136 49.3
TWI56G0074 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 9.4e-26 123.6 111 59.5
BcaB01g02718 Brassica carinata HOM05D005651 ORTHO05D006877 8.0e-25 120.6 111 51.4
Nitab4.5_0009569g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 1.2e-20 106.7 108 47.2
Eucgr.F02519 Eucalyptus grandis HOM05D005651 ORTHO05D006877 2.4e-13 82.4 65 60.0
SHI01042 Sapria himalayana HOM05D005651 ORTHO05D006877 1.9e-10 72.8 59 61.0
TPR.G28787 Trifolium pratense HOM05D005651 ORTHO05D006877 6.1e-09 67.8 169 30.2
CSS0048714 Camellia sinensis var. sinensis HOM05D005651 ORTHO05D006877 3.4e-07 62.0 53 56.6


User provided reference genes

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