Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G002630 Cucumis sativus L. HOM05D002165 ORTHO05D001531 8.7e-50 199.9 94 100.0
MELO3C025021.2 Cucumis melo HOM05D002165 ORTHO05D001531 1.4e-44 182.6 94 91.5
MELO3C025018.2 Cucumis melo HOM05D002165 ORTHO05D001531 5.4e-36 154.1 92 79.3
CsaV3_6G002640 Cucumis sativus L. HOM05D002165 ORTHO05D001531 1.0e-34 149.8 91 79.1
MELO3C025020.2 Cucumis melo HOM05D002165 ORTHO05D001531 1.8e-34 149.1 91 79.1
CsaV3_6G002650 Cucumis sativus L. HOM05D002165 ORTHO05D001531 1.3e-32 142.9 92 73.9
ClCG08G002330 Citrullus lanatus HOM05D002165 ORTHO05D001531 2.4e-31 138.7 91 72.5
ClCG08G002370 Citrullus lanatus HOM05D002165 ORTHO05D001531 2.4e-31 138.7 91 72.5
ClCG08G002340 Citrullus lanatus HOM05D002165 ORTHO05D001531 3.1e-31 138.3 91 72.5
CsaV3_6G002620 Cucumis sativus L. HOM05D002165 ORTHO05D001531 6.9e-31 137.1 68 91.2
CsaV3_6G002670 Cucumis sativus L. HOM05D002165 ORTHO05D001531 2.0e-30 135.6 91 73.6
MELO3C025017.2 Cucumis melo HOM05D002165 ORTHO05D001531 6.4e-29 130.6 91 71.4
Sed0022046 Sechium edule HOM05D002165 ORTHO05D001531 1.1e-28 129.8 88 72.7
ClCG00G002170 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.2e-27 126.3 94 69.1
ClCG08G002310 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.2e-27 126.3 94 69.1
ClCG08G002360 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.2e-27 126.3 94 69.1
ClCG08G002300 Citrullus lanatus HOM05D002165 ORTHO05D001531 2.1e-27 125.6 62 90.3
Sed0009609 Sechium edule HOM05D002165 ORTHO05D001531 1.0e-26 123.2 89 69.7
ClCG08G002280 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.3e-26 122.9 91 65.9
Sed0011742 Sechium edule HOM05D002165 ORTHO05D001531 3.0e-26 121.7 89 70.8
CsaV3_1G038050 Cucumis sativus L. HOM05D002165 ORTHO05D001531 1.5e-25 119.4 96 69.8
Sed0026735 Sechium edule HOM05D002165 ORTHO05D001531 1.5e-25 119.4 88 68.2
MELO3C015240.2 Cucumis melo HOM05D002165 ORTHO05D001531 5.6e-25 117.5 95 69.5
ClCG03G017890 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.4e-23 112.8 99 66.7
Sed0005500 Sechium edule HOM05D002165 ORTHO05D001531 6.9e-23 110.5 88 64.8
Sed0027158 Sechium edule HOM05D002165 ORTHO05D001531 1.2e-22 109.8 89 61.8
Sed0012842 Sechium edule HOM05D002165 ORTHO05D001531 2.0e-22 109.0 86 65.1
Sed0013340 Sechium edule HOM05D002165 ORTHO05D001531 3.8e-21 104.8 89 59.6
Aqoxy5G02840 Aquilegia oxysepala HOM05D002165 ORTHO05D001531 5.0e-13 77.8 87 56.3
FAN02G1676 Fragaria x ananassa HOM05D002165 ORTHO05D001531 8.5e-13 77.0 89 49.4
FAN05G4164 Fragaria x ananassa HOM05D002165 ORTHO05D001531 8.5e-13 77.0 89 49.4
FAN09G0584 Fragaria x ananassa HOM05D002165 ORTHO05D001531 8.5e-13 77.0 89 49.4
FvH4_6g08530 Fragaria vesca HOM05D002165 ORTHO05D001531 1.4e-12 76.3 89 49.4
FAN14G5435 Fragaria x ananassa HOM05D002165 ORTHO05D001531 1.4e-12 76.3 89 49.4
RcHm_v2.0_Chr1g0321401 Rosa chinensis HOM05D002165 ORTHO05D001531 1.4e-12 76.3 88 48.9
RcHm_v2.0_Chr3g0458591 Rosa chinensis HOM05D002165 ORTHO05D001531 2.5e-12 75.5 92 45.7
Atru.chr12.1534 Acer truncatum HOM05D002165 ORTHO05D001531 5.5e-12 74.3 88 44.3
Atru.chr12.1536 Acer truncatum HOM05D002165 ORTHO05D001531 5.5e-12 74.3 88 44.3
Prupe.6G304300 Prunus persica HOM05D002165 ORTHO05D001531 5.5e-12 74.3 89 50.6
Cpa.g.sc48.225 Carica papaya HOM05D002165 ORTHO05D001531 4.6e-11 71.2 85 50.6
AL6G38560 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 1.0e-10 70.1 89 49.4
BcaB04g19717 Brassica carinata HOM05D002165 ORTHO05D001531 1.0e-10 70.1 87 50.6
BcaC03g17834 Brassica carinata HOM05D002165 ORTHO05D001531 1.4e-10 69.7 92 46.7
Ciclev10013222m.g Citrus clementina HOM05D002165 ORTHO05D001531 1.4e-10 69.7 87 47.1
Sed0016802 Sechium edule HOM05D002165 ORTHO05D001531 1.4e-10 69.7 81 49.4
AL3G16610 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 1.8e-10 69.3 88 47.7
CARHR186860 Cardamine hirsuta HOM05D002165 ORTHO05D001531 2.3e-10 68.9 87 48.3
Aa31LG11G9930 Aethionema arabicum HOM05D002165 ORTHO05D001531 3.9e-10 68.2 75 52.0
Ciclev10013801m.g Citrus clementina HOM05D002165 ORTHO05D001531 3.9e-10 68.2 90 46.7
Aa31LG5G16230 Aethionema arabicum HOM05D002165 ORTHO05D001531 6.7e-10 67.4 89 48.3
BcaNung06223 Brassica carinata HOM05D002165 ORTHO05D001531 8.8e-10 67.0 87 48.3
A02p39040 Brassica napus HOM05D002165 ORTHO05D001531 8.8e-10 67.0 87 48.3
C02p58650 Brassica napus HOM05D002165 ORTHO05D001531 8.8e-10 67.0 87 48.3
BolC2t11925H Brassica oleracea HOM05D002165 ORTHO05D001531 8.8e-10 67.0 87 48.3
Carub.0006s2437 Capsella rubella HOM05D002165 ORTHO05D001531 8.8e-10 67.0 89 48.3
Prupe.6G304200 Prunus persica HOM05D002165 ORTHO05D001531 8.8e-10 67.0 89 49.4
THA.LOC104818754 Tarenaya hassleriana HOM05D002165 ORTHO05D001531 8.8e-10 67.0 89 47.2
AT3G05858 Arabidopsis thaliana HOM05D002165 ORTHO05D001531 1.1e-09 66.6 88 46.6
Ciclev10013220m.g Citrus clementina HOM05D002165 ORTHO05D001531 1.1e-09 66.6 87 44.8
MELO3C006762.2 Cucumis melo HOM05D002165 ORTHO05D001531 1.1e-09 66.6 93 45.2
MD04G1186400 Malus domestica HOM05D002165 ORTHO05D001531 1.1e-09 66.6 91 48.4
BcaC04g23632 Brassica carinata HOM05D002165 ORTHO05D001531 1.5e-09 66.2 87 48.3
A09p05720 Brassica napus HOM05D002165 ORTHO05D001531 1.5e-09 66.2 87 48.3
C09p06310 Brassica napus HOM05D002165 ORTHO05D001531 1.5e-09 66.2 87 48.3
BolC9t53551H Brassica oleracea HOM05D002165 ORTHO05D001531 1.5e-09 66.2 87 48.3
BraA02t08873Z Brassica rapa HOM05D002165 ORTHO05D001531 1.5e-09 66.2 87 48.3
BraA09t36213Z Brassica rapa HOM05D002165 ORTHO05D001531 1.5e-09 66.2 87 48.3
Thhalv10005460m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 1.5e-09 66.2 87 47.1
BcaNung03681 Brassica carinata HOM05D002165 ORTHO05D001531 2.0e-09 65.9 87 48.3
BcaNung03907 Brassica carinata HOM05D002165 ORTHO05D001531 2.0e-09 65.9 87 48.3
A06p36950 Brassica napus HOM05D002165 ORTHO05D001531 2.0e-09 65.9 87 48.3
C07p41550 Brassica napus HOM05D002165 ORTHO05D001531 2.0e-09 65.9 87 48.3
BolC7t44687H Brassica oleracea HOM05D002165 ORTHO05D001531 2.0e-09 65.9 87 48.3
BraA06t26620Z Brassica rapa HOM05D002165 ORTHO05D001531 2.0e-09 65.9 87 48.3
TPR.G2624 Trifolium pratense HOM05D008018 ORTHO05D001531 2.0e-09 65.9 87 47.1
Duzib128G1662 Durio zibethinus HOM05D002165 ORTHO05D001531 2.5e-09 65.5 85 45.9
Medtr1g084920 Medicago truncatula HOM05D008018 ORTHO05D001531 3.3e-09 65.1 87 46.0
BcaC01g04301 Brassica carinata HOM05D002165 ORTHO05D001531 4.3e-09 64.7 88 47.7
C03p41790 Brassica napus HOM05D002165 ORTHO05D001531 4.3e-09 64.7 88 47.7
BolC3t16462H Brassica oleracea HOM05D002165 ORTHO05D001531 4.3e-09 64.7 88 47.7
Eucgr.H01331 Eucalyptus grandis HOM05D002165 ORTHO05D001531 4.3e-09 64.7 88 42.0
Gohir.A02G059800 Gossypium hirsutum HOM05D002165 ORTHO05D001531 4.3e-09 64.7 88 45.5
Gohir.D02G065400 Gossypium hirsutum HOM05D002165 ORTHO05D001531 4.3e-09 64.7 88 45.5
Gorai.005G074100 Gossypium raimondii HOM05D002165 ORTHO05D001531 4.3e-09 64.7 88 45.5
Thecc.05G329700 Theobroma cacao HOM05D002165 ORTHO05D001531 5.7e-09 64.3 82 45.1
BcaB07g29941 Brassica carinata HOM05D002165 ORTHO05D001531 7.4e-09 63.9 87 47.1
Eucgr.H01326 Eucalyptus grandis HOM05D002165 ORTHO05D001531 7.4e-09 63.9 88 43.2
Gohir.A09G242300 Gossypium hirsutum HOM05D002165 ORTHO05D001531 7.4e-09 63.9 88 45.5
Gohir.D09G243000 Gossypium hirsutum HOM05D002165 ORTHO05D001531 7.4e-09 63.9 88 45.5
Gorai.006G266800 Gossypium raimondii HOM05D002165 ORTHO05D001531 7.4e-09 63.9 88 45.5
Psat6g153800 Pisum sativum HOM05D008018 ORTHO05D001531 7.4e-09 63.9 82 46.3
CARHR080310 Cardamine hirsuta HOM05D002165 ORTHO05D001531 9.7e-09 63.5 88 45.5
Ca_10206_v3 Cicer arietinum L. HOM05D008018 ORTHO05D001531 9.7e-09 63.5 83 48.2
Eucgr.H01325 Eucalyptus grandis HOM05D002165 ORTHO05D001531 9.7e-09 63.5 90 44.4
Thecc.04G314700 Theobroma cacao HOM05D002165 ORTHO05D001531 9.7e-09 63.5 87 43.7
TPR.G2630 Trifolium pratense HOM05D008018 ORTHO05D001531 9.7e-09 63.5 83 48.2
BcaB04g19240 Brassica carinata HOM05D002165 ORTHO05D001531 1.3e-08 63.2 88 46.6
A03p34320 Brassica napus HOM05D002165 ORTHO05D001531 1.3e-08 63.2 88 46.6
BraA03t12608Z Brassica rapa HOM05D002165 ORTHO05D001531 1.3e-08 63.2 88 46.6
CsaV3_3G015630 Cucumis sativus L. HOM05D002165 ORTHO05D001531 1.3e-08 63.2 61 47.5
Medtr1g484990 Medicago truncatula HOM05D008018 ORTHO05D001531 1.3e-08 63.2 87 43.7
Sed0018176 Sechium edule HOM05D002165 ORTHO05D001531 1.3e-08 63.2 89 44.9
Carub.0003s0521 Capsella rubella HOM05D002165 ORTHO05D001531 1.7e-08 62.8 86 46.5
Eucgr.H01327 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.7e-08 62.8 86 43.0
Eucgr.H01329 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.7e-08 62.8 86 43.0
Eucgr.H01332 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.7e-08 62.8 88 43.2
Thecc.09G084900 Theobroma cacao HOM05D002165 ORTHO05D001531 2.8e-08 62.0 82 47.6
Cc02_g35880 Coffea canephora HOM05D002165 ORTHO05D001531 3.7e-08 61.6 75 53.3
MELO3C004151.2 Cucumis melo HOM05D002165 ORTHO05D001531 3.7e-08 61.6 81 45.7
Gohir.A13G177800 Gossypium hirsutum HOM05D002165 ORTHO05D001531 3.7e-08 61.6 84 45.2
Psat6g154200 Pisum sativum HOM05D008018 ORTHO05D001531 3.7e-08 61.6 87 46.0
Sed0018337 Sechium edule HOM05D002165 ORTHO05D001531 3.7e-08 61.6 81 48.1
Sp3g04720 Schrenkiella parvula HOM05D002165 ORTHO05D001531 4.8e-08 61.2 88 45.5
ClCG02G014640 Citrullus lanatus HOM05D002165 ORTHO05D001531 6.3e-08 60.8 66 51.5
Lalb_Chr21g0310041 Lupinus albus HOM05D008018 ORTHO05D001531 6.3e-08 60.8 87 49.4
Medtr0187s0020 Medicago truncatula HOM05D008018 ORTHO05D001531 6.3e-08 60.8 86 43.0
Thhalv10021847m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 8.2e-08 60.5 90 46.7
Gohir.D13G184400 Gossypium hirsutum HOM05D002165 ORTHO05D001531 8.2e-08 60.5 84 45.2
Gorai.013G210100 Gossypium raimondii HOM05D002165 ORTHO05D001531 8.2e-08 60.5 84 45.2
TAR633G1086 Trochodendron aralioides HOM05D002165 ORTHO05D001531 8.2e-08 60.5 91 44.0
Lj6g0008561 Lotus japonicus HOM05D002165 ORTHO05D001531 1.1e-07 60.1 78 47.4
Sc16g0009410 Simmondsia chinensis HOM05D002165 ORTHO05D001531 1.1e-07 60.1 85 48.2
Psat4g020920 Pisum sativum HOM05D002165 ORTHO05D001531 1.4e-07 59.7 87 47.1
Eucgr.H01330 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.8e-07 59.3 84 42.9
Glyma.20G091900 Glycine max HOM05D008018 ORTHO05D001531 2.4e-07 58.9 83 43.4
Psat6g154000 Pisum sativum HOM05D008018 ORTHO05D001531 2.4e-07 58.9 82 41.5
Psat6g154080 Pisum sativum HOM05D008018 ORTHO05D001531 2.4e-07 58.9 87 43.7
Sed0002745 Sechium edule HOM05D002165 ORTHO05D001531 2.4e-07 58.9 82 47.6
TAR362G0276 Trochodendron aralioides HOM05D002165 ORTHO05D001531 2.4e-07 58.9 91 45.1
Eucgr.H01328 Eucalyptus grandis HOM05D002165 ORTHO05D001531 4.1e-07 58.2 84 41.7
Psat6g154040 Pisum sativum HOM05D008018 ORTHO05D001531 4.1e-07 58.2 84 42.9
AT5G26620 Arabidopsis thaliana HOM05D002165 ORTHO05D001531 5.3e-07 57.8 66 48.5
Ciclev10010714m.g Citrus clementina HOM05D002165 ORTHO05D001531 5.3e-07 57.8 84 45.2
COL.COLO4_05484 Corchorus olitorius HOM05D002165 ORTHO05D001531 5.3e-07 57.8 85 47.1
Medtr1g084840 Medicago truncatula HOM05D008018 ORTHO05D001531 5.3e-07 57.8 82 42.7
Medtr1g485020 Medicago truncatula HOM05D008018 ORTHO05D001531 5.3e-07 57.8 86 43.0
TPR.G18867 Trifolium pratense HOM05D008018 ORTHO05D001531 5.3e-07 57.8 83 44.6
Psat3g015160 Pisum sativum HOM05D008018 ORTHO05D001531 6.9e-07 57.4 85 44.7
GSVIVG01017704001 Vitis vinifera HOM05D002165 ORTHO05D001531 6.9e-07 57.4 89 40.4
Ah.06g190740 Amaranthus hybridus HOM05D002165 ORTHO05D001531 9.1e-07 57.0 72 43.1
BcaC05g29776 Brassica carinata HOM05D002165 ORTHO05D001531 9.1e-07 57.0 88 43.2
AUR62000479 Chenopodium quinoa HOM05D002165 ORTHO05D001531 9.1e-07 57.0 72 50.0
Glyma.10G143200 Glycine max HOM05D008018 ORTHO05D001531 9.1e-07 57.0 83 44.6
Glyma.15G185600 Glycine max HOM05D002165 ORTHO05D001531 9.1e-07 57.0 61 47.5
Glyma.17G042500 Glycine max HOM05D002165 ORTHO05D001531 9.1e-07 57.0 79 45.6
GSVIVG01017705001 Vitis vinifera HOM05D002165 ORTHO05D001531 9.1e-07 57.0 89 40.4
GSVIVG01017706001 Vitis vinifera HOM05D002165 ORTHO05D001531 9.1e-07 57.0 89 40.4
Phvul.003G124200 Phaseolus vulgaris HOM05D002165 ORTHO05D001531 1.2e-06 56.6 78 47.4
GSVIVG01017707001 Vitis vinifera HOM05D002165 ORTHO05D001531 1.2e-06 56.6 86 39.5
Glyma.09G080800 Glycine max HOM05D002165 ORTHO05D001531 1.5e-06 56.2 61 47.5
Glyma.15G185700 Glycine max HOM05D002165 ORTHO05D001531 1.5e-06 56.2 79 48.1
Glyma.15G185400 Glycine max HOM05D002165 ORTHO05D001531 2.0e-06 55.8 83 45.8
Psat2g102520 Pisum sativum HOM05D008018 ORTHO05D001531 2.0e-06 55.8 86 41.9
Psat6g154120 Pisum sativum HOM05D008018 ORTHO05D001531 2.0e-06 55.8 75 44.0
A01p30200 Brassica napus HOM05D002165 ORTHO05D001531 2.6e-06 55.5 90 45.6
COL.COLO4_36933 Corchorus olitorius HOM05D002165 ORTHO05D001531 2.6e-06 55.5 88 44.3
Actinidia17737 Actinidia chinensis HOM05D002165 ORTHO05D001531 3.4e-06 55.1 76 50.0
BcaC05g30083 Brassica carinata HOM05D002165 ORTHO05D001531 3.4e-06 55.1 88 42.0
Eucgr.H01321 Eucalyptus grandis HOM05D002165 ORTHO05D001531 3.4e-06 55.1 84 44.0
Glyma.10G143000 Glycine max HOM05D008018 ORTHO05D001531 3.4e-06 55.1 82 45.1
Glyma.13G117400 Glycine max HOM05D002165 ORTHO05D001531 3.4e-06 55.1 85 45.9
Lalb_Chr11g0073701 Lupinus albus HOM05D002165 ORTHO05D001531 3.4e-06 55.1 73 45.2
Manes.03G213400 Manihot esculenta HOM05D002165 ORTHO05D001531 3.4e-06 55.1 89 36.0
Psat6g157040 Pisum sativum HOM05D008018 ORTHO05D001531 3.4e-06 55.1 82 42.7
A05p42200 Brassica napus HOM05D002165 ORTHO05D001531 4.5e-06 54.7 88 42.0
C05p61420 Brassica napus HOM05D002165 ORTHO05D001531 4.5e-06 54.7 88 42.0
BolC5t34800H Brassica oleracea HOM05D002165 ORTHO05D001531 4.5e-06 54.7 88 42.0
BraA05t22939Z Brassica rapa HOM05D002165 ORTHO05D001531 4.5e-06 54.7 88 42.0
AUR62006822 Chenopodium quinoa HOM05D002165 ORTHO05D001531 4.5e-06 54.7 72 48.6
Eucgr.H01334 Eucalyptus grandis HOM05D002165 ORTHO05D001531 4.5e-06 54.7 90 42.2
Medtr0187s0050 Medicago truncatula HOM05D008018 ORTHO05D001531 4.5e-06 54.7 86 40.7
Medtr0187s0070 Medicago truncatula HOM05D008018 ORTHO05D001531 4.5e-06 54.7 86 40.7
Nitab4.5_0005662g0010 Nicotiana tabacum HOM05D002165 ORTHO05D001531 4.5e-06 54.7 64 48.4
PSO761G0534 Papaver somniferum HOM05D002165 ORTHO05D001531 4.5e-06 54.7 89 40.4
TWI12G1307 Tripterygium wilfordii HOM05D002165 ORTHO05D001531 4.5e-06 54.7 91 44.0
CSS0027376 Camellia sinensis var. sinensis HOM05D002165 ORTHO05D001531 5.9e-06 54.3 59 50.8
Migut.N00975 Erythranthe guttata HOM05D002165 ORTHO05D001531 5.9e-06 54.3 71 49.3
Eucgr.H01324 Eucalyptus grandis HOM05D002165 ORTHO05D001531 5.9e-06 54.3 88 42.0
EL10Ac4g09564 Beta vulgaris HOM05D002165 ORTHO05D001531 7.7e-06 53.9 72 47.2
BcaC09g47857 Brassica carinata HOM05D002165 ORTHO05D001531 7.7e-06 53.9 88 44.3
BolC1t05659H Brassica oleracea HOM05D002165 ORTHO05D001531 7.7e-06 53.9 88 44.3
BraA01t04469Z Brassica rapa HOM05D002165 ORTHO05D001531 7.7e-06 53.9 88 44.3
Glyma.10G143300 Glycine max HOM05D008018 ORTHO05D001531 7.7e-06 53.9 84 42.9
Peaxi162Scf00194g00002 Petunia axillaris HOM05D002165 ORTHO05D001531 7.7e-06 53.9 65 50.8
Phvul.007G205200 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 7.7e-06 53.9 83 41.0
Phvul.009G221100 Phaseolus vulgaris HOM05D002165 ORTHO05D001531 7.7e-06 53.9 78 44.9
Psat6g156960 Pisum sativum HOM05D008018 ORTHO05D001531 7.7e-06 53.9 83 42.2


User provided reference genes

Program Settings