Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 6.8e-154 547.4 291 100.0
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 1.9e-148 529.3 284 98.6
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 1.4e-143 513.1 285 96.1
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 7.9e-134 480.7 287 91.3
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 7.1e-119 431.0 285 80.4
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 2.7e-118 429.1 285 79.6
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 4.6e-118 428.3 285 78.9
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.3e-117 426.8 285 79.6
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 1.8e-117 426.4 285 78.9
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 2.3e-117 426.0 285 79.3
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 5.1e-117 424.9 285 77.9
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 6.7e-117 424.5 285 78.6
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 1.1e-116 423.7 285 78.6
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 4.3e-116 421.8 287 78.7
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 7.4e-116 421.0 284 78.9
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 9.7e-116 420.6 285 78.6
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 2.8e-115 419.1 285 77.2
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 3.7e-115 418.7 285 80.0
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 4.8e-115 418.3 285 77.5
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 8.2e-115 417.5 285 77.2
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 8.2e-115 417.5 285 76.8
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 1.4e-114 416.8 285 77.9
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 2.4e-114 416.0 285 76.8
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 2.4e-114 416.0 285 76.5
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 4.1e-114 415.2 285 77.2
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 4.1e-114 415.2 285 76.8
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 4.1e-114 415.2 285 76.1
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 5.3e-114 414.8 285 76.5
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 2.6e-113 412.5 285 76.1
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 1.0e-112 410.6 285 75.8
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 1.3e-112 410.2 285 76.1
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.3e-112 410.2 285 76.5
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 1.7e-112 409.8 285 76.8
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 2.2e-112 409.5 285 76.5
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 3.8e-112 408.7 285 76.5
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 6.5e-112 407.9 292 74.3
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 6.5e-112 407.9 292 74.3
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 6.5e-112 407.9 295 74.2
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.9e-111 406.4 284 75.7
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 3.2e-111 405.6 285 77.2
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 3.2e-111 405.6 291 74.9
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 1.2e-110 403.7 285 75.8
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 1.6e-110 403.3 283 74.9
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 2.1e-110 402.9 285 74.4
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 2.7e-110 402.5 299 73.2
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 3.6e-110 402.1 285 75.4
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 4.6e-110 401.7 293 72.7
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 6.1e-110 401.4 285 76.5
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 6.1e-110 401.4 293 74.4
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 1.4e-109 400.2 293 73.0
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.4e-109 400.2 293 74.1
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.8e-109 399.8 291 73.9
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 2.3e-109 399.4 285 73.3
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 3.0e-109 399.1 293 73.0
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 8.8e-109 397.5 293 73.4
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 1.1e-108 397.1 294 73.5
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 1.5e-108 396.7 286 74.5
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 2.0e-108 396.4 299 73.6
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 3.3e-108 395.6 293 73.0
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 5.7e-108 394.8 294 72.8
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 5.7e-108 394.8 294 72.8
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 9.7e-108 394.0 293 71.0
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 1.7e-107 393.3 294 72.4
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 2.2e-107 392.9 278 75.5
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 3.7e-107 392.1 320 67.5
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 3.7e-107 392.1 293 71.3
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 6.3e-107 391.3 285 71.9
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 1.8e-106 389.8 293 71.7
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 3.1e-106 389.0 293 71.0
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 4.1e-106 388.7 293 71.3
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 5.3e-106 388.3 285 71.9
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 6.9e-106 387.9 285 71.6
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 9.1e-106 387.5 285 72.6
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 1.2e-105 387.1 286 72.0
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 1.2e-105 387.1 285 71.6
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 1.5e-105 386.7 285 71.9
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 2.6e-105 386.0 285 72.6
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 3.4e-105 385.6 285 72.3
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 4.5e-105 385.2 286 72.4
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 4.5e-105 385.2 293 70.6
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 2.2e-104 382.9 294 70.7
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 3.8e-104 382.1 293 71.3
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 2.5e-103 379.4 284 72.5
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 5.5e-103 378.3 286 70.6
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 7.2e-103 377.9 287 69.7
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 2.1e-102 376.3 284 72.2
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.8e-101 373.2 256 77.0
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 2.3e-101 372.9 281 71.9
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 7.4e-100 367.9 285 69.1
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 9.7e-100 367.5 285 67.4
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 4.8e-99 365.2 287 69.3
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 1.4e-98 363.6 282 68.1
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 1.4e-98 363.6 285 67.4
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 5.3e-98 361.7 288 71.2
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 7.0e-98 361.3 272 70.2
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 1.2e-97 360.5 290 67.2
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 5.9e-97 358.2 269 69.9
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 1.3e-96 357.1 290 66.6
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 1.7e-96 356.7 269 69.9
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 2.9e-96 355.9 269 69.5
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 3.8e-96 355.5 264 73.1
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 1.1e-95 354.0 292 65.8
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 6.1e-94 348.2 291 63.9
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 2.3e-93 346.3 237 77.2
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 9.7e-92 340.9 296 64.2
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 2.2e-91 339.7 287 65.2
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 2.8e-91 339.3 271 68.6
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 4.8e-91 338.6 261 67.8
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 8.2e-91 337.8 261 67.8
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 4.1e-90 335.5 249 71.5
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 7.0e-90 334.7 256 69.1
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 7.2e-87 324.7 237 73.0
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 2.7e-86 322.8 285 64.9
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 2.2e-83 313.2 287 60.3
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 4.1e-82 308.9 290 61.0
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 5.3e-82 308.5 237 66.7
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.0e-80 304.3 228 71.1
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 2.2e-80 303.1 237 68.4
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 3.8e-80 302.4 285 62.1
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.4e-77 293.9 284 59.2
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 1.7e-75 287.0 284 58.8
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 1.8e-69 266.9 223 64.1
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 4.9e-67 258.8 303 54.1
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 1.1e-66 257.7 196 67.9
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 4.1e-66 255.8 289 49.8
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 4.1e-66 255.8 174 80.5
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 2.8e-62 243.0 286 50.3
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 8.0e-62 241.5 294 48.3
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 8.3e-59 231.5 289 47.4
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 7.0e-58 228.4 178 73.6
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 3.6e-54 216.1 184 66.3
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 8.1e-46 188.3 249 50.6
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 4.0e-45 186.0 150 72.7
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 5.8e-44 182.2 122 85.2
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 2.9e-43 179.9 158 67.1
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 9.2e-42 174.9 120 83.3
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 7.3e-39 165.2 143 65.0
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 4.0e-37 159.5 245 43.3
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 2.7e-33 146.7 283 35.7
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 1.0e-32 144.8 250 44.0
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 2.2e-27 127.1 127 63.0
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.9e-27 126.7 145 59.3
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 2.1e-25 120.6 87 64.4
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 6.0e-25 119.0 160 48.8
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 6.9e-21 105.5 98 66.3
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 6.9e-21 105.5 100 53.0
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 9.9e-20 101.7 65 75.4
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 1.3e-16 91.3 66 72.7
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.3e-14 84.7 62 75.8
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 3.7e-14 83.2 350 26.0
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 1.4e-13 81.3 62 62.9
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 4.2e-10 69.7 84 52.4
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 5.1e-08 62.8 113 37.2


User provided reference genes

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