Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 2.0e-259 898.7 479 100.0
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 1.6e-229 799.3 504 87.5
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 1.5e-219 766.1 481 85.7
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 1.3e-181 640.2 484 73.8
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 5.1e-98 362.5 511 48.1
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 1.7e-96 357.5 516 47.1
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 2.2e-85 320.5 494 44.9
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 9.4e-84 315.1 478 45.0
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 5.2e-82 309.3 490 43.3
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 6.7e-82 308.9 504 41.1
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 8.8e-82 308.5 457 46.8
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 1.5e-81 307.8 504 41.1
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 1.3e-80 304.7 530 42.5
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.7e-80 304.3 501 44.1
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 2.2e-80 303.9 495 41.8
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 2.8e-80 303.5 462 45.5
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 8.2e-80 302.0 496 42.3
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 1.8e-79 300.8 512 42.2
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 3.1e-79 300.1 480 44.2
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 1.6e-78 297.7 491 40.5
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 2.7e-78 297.0 509 45.0
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 4.5e-78 296.2 497 44.3
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 5.9e-78 295.8 497 41.6
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 7.7e-78 295.4 461 44.5
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 9.4e-76 288.5 503 42.1
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 1.2e-75 288.1 488 41.0
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 2.3e-74 283.9 498 40.6
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 3.0e-74 283.5 502 40.8
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 5.2e-74 282.7 480 43.1
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 5.2e-74 282.7 504 43.5
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 2.6e-73 280.4 518 39.6
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 3.4e-73 280.0 507 39.6
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 4.4e-73 279.6 514 38.3
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 5.7e-73 279.3 512 41.0
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 7.5e-73 278.9 509 39.3
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 9.8e-73 278.5 494 40.3
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 2.8e-72 276.9 511 40.3
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 1.1e-71 275.0 493 39.4
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 1.4e-71 274.6 485 40.4
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 4.1e-71 273.1 502 41.8
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 5.4e-71 272.7 463 40.8
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 1.0e-69 268.5 497 39.8
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 6.5e-69 265.8 485 39.4
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 1.2e-67 261.5 519 38.2
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 2.1e-67 260.8 499 39.9
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 3.6e-67 260.0 481 39.7
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 6.1e-67 259.2 481 39.5
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 1.4e-66 258.1 487 39.8
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 1.5e-65 254.6 491 39.1
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 2.0e-65 254.2 497 39.8
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 7.5e-65 252.3 503 38.6
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 9.8e-65 251.9 485 40.6
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 2.2e-64 250.8 478 37.0
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 3.7e-64 250.0 514 38.5
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.7e-64 250.0 514 38.5
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 8.3e-64 248.8 514 38.3
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 2.4e-63 247.3 510 36.9
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 3.1e-63 246.9 513 37.8
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 9.2e-63 245.4 525 37.7
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 9.2e-63 245.4 515 38.3
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 1.6e-62 244.6 486 38.9
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.7e-61 241.1 517 37.9
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 3.8e-61 240.0 502 38.8
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 1.9e-60 237.7 483 37.9
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 9.5e-60 235.3 495 38.0
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.8e-58 231.1 500 37.0
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 3.4e-57 226.9 441 38.5
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 4.4e-57 226.5 477 37.7
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 7.5e-57 225.7 489 36.0
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 9.8e-57 225.3 427 40.7
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 3.7e-56 223.4 479 37.4
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 3.7e-56 223.4 431 37.8
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 4.9e-56 223.0 494 37.4
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 4.9e-56 223.0 486 36.0
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 8.3e-56 222.2 443 37.9
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 1.4e-55 221.5 492 36.6
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 7.0e-55 219.2 488 36.9
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 1.6e-54 218.0 473 35.7
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 4.6e-54 216.5 432 38.4
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 7.8e-54 215.7 485 36.7
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 3.9e-53 213.4 472 36.0
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 3.9e-53 213.4 432 38.4
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 1.9e-52 211.1 487 37.0
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 1.9e-52 211.1 482 34.9
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 1.9e-52 211.1 480 35.8
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 2.5e-52 210.7 490 36.7
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 3.3e-52 210.3 477 37.1
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 3.3e-52 210.3 476 36.1
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 3.3e-52 210.3 477 37.1
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 3.3e-52 210.3 477 37.1
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 4.3e-52 209.9 483 35.0
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 4.3e-52 209.9 418 37.3
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 5.6e-52 209.5 474 36.1
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 7.3e-52 209.1 477 36.1
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 1.2e-51 208.4 474 36.3
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 1.2e-51 208.4 474 36.1
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 2.8e-51 207.2 482 35.7
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 3.6e-51 206.8 224 52.2
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 1.8e-50 204.5 442 37.1
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 2.3e-50 204.1 498 35.3
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 2.9e-48 197.2 420 36.4
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 7.0e-47 192.6 409 36.2
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 7.8e-46 189.1 554 33.4
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 1.0e-45 188.7 513 33.1
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 1.7e-45 188.0 491 32.4
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.5e-44 184.9 216 50.5
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.6e-43 181.4 441 35.1
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 9.8e-41 172.2 480 33.1
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 6.4e-40 169.5 497 30.0
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 7.1e-39 166.0 215 47.4
FAN03G2011 Fragaria x ananassa HOM05D004687 ORTHO05D006002 9.2e-39 165.6 417 36.5
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 1.6e-38 164.9 155 58.7
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.6e-38 163.3 155 58.1
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 1.0e-37 162.2 272 39.3
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.3e-37 161.8 151 58.9
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 2.3e-37 161.0 451 31.0
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.9e-37 160.2 155 58.1
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 3.9e-37 160.2 208 49.0
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 3.9e-37 160.2 160 55.6
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 8.1e-35 152.5 509 33.8
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.7e-32 144.8 142 57.0
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 3.8e-32 143.7 481 29.5
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 2.4e-31 141.0 457 30.2
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 3.2e-31 140.6 139 54.0
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 2.7e-30 137.5 262 42.0
Sopen01g038880 Solanum pennellii HOM05D004687 ORTHO05D006002 1.3e-29 135.2 321 35.8
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 6.9e-26 122.9 134 53.7
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.5e-25 121.7 427 31.9
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 4.4e-25 120.2 183 38.3
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 4.2e-23 113.6 522 24.7
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 7.8e-22 109.4 403 28.3
ATR0804G028 Amborella trichopoda HOM05D004687 ORTHO05D006002 3.0e-21 107.5 131 44.3
Lalb_Chr17g0339031 Lupinus albus HOM05D004687 ORTHO05D006002 2.5e-20 104.4 344 30.8
vmacro13233 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 1.4e-18 98.6 135 44.4
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 4.9e-16 90.1 271 32.5
Actinidia20138 Actinidia chinensis HOM05D004687 ORTHO05D006002 1.1e-15 89.0 117 47.9
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 5.4e-15 86.7 105 44.8
Actinidia10067 Actinidia chinensis HOM05D004687 ORTHO05D006002 3.9e-13 80.5 373 28.2
Ca_03421_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 5.6e-12 76.6 125 39.2
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 2.9e-08 64.3 71 46.5
ATR0804G093 Amborella trichopoda HOM05D004687 ORTHO05D006002 3.5e-06 57.4 50 64.0
AT4G01245 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 6.0e-06 56.6 60 56.7


User provided reference genes

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